Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G30100 554 / 0 pentatricopeptide (PPR) repeat-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G035700 [exp] 51 / 2e-06 AT1G05670 922 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1), Pentatricopeptide repeat (PPR-like) superfamily protein (.2) Potri.013G144800 [exp] 47 / 2e-05 AT1G73710 1206 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.004G013300 [exp] 45 / 0.0001 AT3G53700 1092 / 0.0 maternal effect embryo arrest 40, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.013G034400 [exp] 44 / 0.0003 AT3G22470 476 / 1e-161 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042274 [exp] 680 / 0 AT2G30100 578 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Lus10026382 [exp] 669 / 0 AT2G30100 580 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Lus10008185 [exp] 46 / 8e-05 AT1G19290 864 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10039149 [exp] 45 / 0.0001 AT3G18110 976 / 0.0 embryo defective 1270, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10026206 [exp] 43 / 0.0006 AT5G14770 717 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.009G075200.8 pacid=42772289 polypeptide=Potri.009G075200.8.p locus=Potri.009G075200 ID=Potri.009G075200.8.v4.1 annot-version=v4.1 ATGGCCTCTGCTCATGCATTTAGTTCACTATCTAAAGTTTCTCCTGTATTTTCTCTTAAAAAACGGTACTGGAATTCATGTATGAAACCTTGCTGTATGG TTTCTACCATAATTTGCAACTACCAAACGCCTAAAAGGCCCAATTTTGTTGTTGCAAAGACTACTAAAGTTAGAGAATTTAGGCTATTTAAGTCAGTGGA ATTGGACCAGTACGTGACGAGTGATGATGAAGAAGAAATGGGTGAAGGGTTTTTTGAGGCAATTGAGGAACTTGAGAGAATGACAAGAGAACCTTCTGAT ATTCTTGAGGAAATGAATGATAGGTTGTCCGCGAGAGAGTTGCAATTAGTGCTTGTTTATTTCTCTCAAGAGGGGAGAGATTCCTGGTGTGCGCTTGAGG TGTTTGAGTGGTTGAGAAAGGAGAATAGGGTCGACAAGGAAACAATGGAGCTTATGGTTTCGATAATGTGTAGTTGGGTTAAGAAGTTAATTGAAGGGGA ACAAGATGTTGGGGATGTGGTTGACTTACTTGTGGATATGGATTGTGTGGGGTTGAAGCCGAGTTTTAGTATGATTGAGAAGGTGATATCTTTGTATTGG GATATGGGGAAGAAGGAGGGAGCGGTTTCATTTGTGAAGGAGGTTTTGAGACGAGGGATTGCATATTCGGGCGATGATGGAGAAGGACAGAAAGGAGGCC CAACTGGGTATCTTACATGGAAGATGATGGTTGATGGAAACTACAGGAATGCAGTCAAATTGGTGATTCATCTTAGAGAATCTGGATTAAAGCCTGAGAT CTACGCCTACCTCATTGCAATGACAGCTGTTGTCAAAGAGCTAAATGAATTTTCTAAAGCTCTACGCAAGTTGAAAGGTTATTCGAGGTCTGGTATGGTA ACTGAACTTGATGCTGAGAATGTAGAGCTTGTTGAGAAGTATCAGTCAGATCTTCTAGCTGATGGAGTATGCTTGTCCAGTTGGGTCATTCAGGAGGGAA GTCCTGCACTTTATGGTGTGGTTCATGAGCGACTTCTTGCCATGTATATTTGTGCTGGCCGTGGGCTTGATGCTGAAAGACAGTTATGGGAAATGAAGCT TGTTGGTAAGGAGGCTGATGGAGACCTTTATGACATTGTTTTAGCTATCTGTGCATCTCAAAAGGAGGCCAGCGCCGTAGCACGGTTGCTCACTAGAATA GAGGTTGCAAGCTCTATGCGCAAGAAGAAATCATTGTCATGGTTGTTGAGAGGTTACATTAAAGGTGGACACTATGGTGAGGCTGCAGAAACACTAATTA AGATGCTTGATTTGGGTTTGTCTCCAGATTATTTAGACAGAGTAGCGGTGATGCAGGGTCTGAGAAAAAGGATCCAACAATGGGGAAATGTTGAATCTTA TCTTAAGCTTTGCAAGCGCCTCTCTGATGTGAATTTGATTGGACCTTCTCTTGTATATCTGTATATAAAGAAATATAAGCTTTGGATCATGAAATTGCTT TGA
AA sequence Show only first row Show all	>Potri.009G075200.8 pacid=42772289 polypeptide=Potri.009G075200.8.p locus=Potri.009G075200 ID=Potri.009G075200.8.v4.1 annot-version=v4.1 MASAHAFSSLSKVSPVFSLKKRYWNSCMKPCCMVSTIICNYQTPKRPNFVVAKTTKVREFRLFKSVELDQYVTSDDEEEMGEGFFEAIEELERMTREPSD ILEEMNDRLSARELQLVLVYFSQEGRDSWCALEVFEWLRKENRVDKETMELMVSIMCSWVKKLIEGEQDVGDVVDLLVDMDCVGLKPSFSMIEKVISLYW DMGKKEGAVSFVKEVLRRGIAYSGDDGEGQKGGPTGYLTWKMMVDGNYRNAVKLVIHLRESGLKPEIYAYLIAMTAVVKELNEFSKALRKLKGYSRSGMV TELDAENVELVEKYQSDLLADGVCLSSWVIQEGSPALYGVVHERLLAMYICAGRGLDAERQLWEMKLVGKEADGDLYDIVLAICASQKEASAVARLLTRI EVASSMRKKKSLSWLLRGYIKGGHYGEAAETLIKMLDLGLSPDYLDRVAVMQGLRKRIQQWGNVESYLKLCKRLSDVNLIGPSLVYLYIKKYKLWIMKLL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G30100			pentatricopeptide (PPR) repeat...		Potri.009G075200 [exp]	0	1
AT5G15790			RING/U-box superfamily protein...		Potri.004G114800 [exp]	4.00	0.7783
AT3G22750			Protein kinase superfamily pro...		Potri.002G049700 [exp]	7.21	0.7948
AT2G41290		SSL2	strictosidine synthase-like 2 ...		Potri.016G037700 [exp]	8.12	0.7935
AT2G34900		GTE1, GTE01, IM...	IMBIBITION-INDUCIBLE 1, GLOBAL...		Potri.001G073800 [exp]	10.00	0.7348
AT3G22060			Receptor-like protein kinase-r...		Potri.007G120501 [exp]	10.09	0.7765
AT1G72510			Protein of unknown function (D...		Potri.003G067800 [exp]	13.34	0.6892
AT3G27010	TCP	ATTCP20, PCF1, ...	ARABIDOPSIS THALIANA TEOSINTE ...		Potri.003G167900 [exp]	15.65	0.7203
AT3G60580	C2H2ZnF		C2H2-like zinc finger protein ...		Potri.002G143800 [exp]	17.66	0.7539
AT4G16130		ATISA1, ARA1	arabinose kinase (.1)		Potri.018G145700 [exp]	18.73	0.7599	Pt-ARA1.1
AT3G07960		PIP5K6	phosphatidylinositol-4-phospha...		Potri.003G196000 [exp]	20.85	0.7467

Compare expression of checked genes

Potri.009G075200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.