Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G51770 1206 / 0 ATEOL1, ETO1 ARABIDOPSIS ETHYLENE OVERPRODUCER 1, tetratricopeptide repeat (TPR)-containing protein (.1), tetratricopeptide repeat (TPR)-containing protein (.2) AT5G58550 1135 / 0 EOL2 ETO1-like 2 (.1.2) AT4G02680 818 / 0 EOL1 ETO1-like 1 (.1) AT3G04240 52 / 2e-06 SEC secret agent, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G280100 [exp] 1695 / 0 AT3G51770 1192 / 0.0 ARABIDOPSIS ETHYLENE OVERPRODUCER 1, tetratricopeptide repeat (TPR)-containing protein (.1), tetratricopeptide repeat (TPR)-containing protein (.2) Potri.016G123800 [exp] 1207 / 0 AT3G51770 1415 / 0.0 ARABIDOPSIS ETHYLENE OVERPRODUCER 1, tetratricopeptide repeat (TPR)-containing protein (.1), tetratricopeptide repeat (TPR)-containing protein (.2) Potri.006G103400 [exp] 1187 / 0 AT3G51770 1399 / 0.0 ARABIDOPSIS ETHYLENE OVERPRODUCER 1, tetratricopeptide repeat (TPR)-containing protein (.1), tetratricopeptide repeat (TPR)-containing protein (.2) Potri.002G048300 [exp] 868 / 0 AT4G02680 1293 / 0.0 ETO1-like 1 (.1) Potri.005G214400 [exp] 850 / 0 AT4G02680 1264 / 0.0 ETO1-like 1 (.1) Potri.019G025600 [exp] 47 / 6e-05 AT3G04240 1689 / 0.0 secret agent, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.013G051400 [exp] 47 / 6e-05 AT3G04240 1684 / 0.0 secret agent, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031859 [exp] 1199 / 0 AT3G51770 1088 / 0.0 ARABIDOPSIS ETHYLENE OVERPRODUCER 1, tetratricopeptide repeat (TPR)-containing protein (.1), tetratricopeptide repeat (TPR)-containing protein (.2) Lus10031289 [exp] 1184 / 0 AT3G51770 1083 / 0.0 ARABIDOPSIS ETHYLENE OVERPRODUCER 1, tetratricopeptide repeat (TPR)-containing protein (.1), tetratricopeptide repeat (TPR)-containing protein (.2) Lus10022660 [exp] 1041 / 0 AT3G51770 1231 / 0.0 ARABIDOPSIS ETHYLENE OVERPRODUCER 1, tetratricopeptide repeat (TPR)-containing protein (.1), tetratricopeptide repeat (TPR)-containing protein (.2) Lus10002206 [exp] 945 / 0 AT3G51770 1089 / 0.0 ARABIDOPSIS ETHYLENE OVERPRODUCER 1, tetratricopeptide repeat (TPR)-containing protein (.1), tetratricopeptide repeat (TPR)-containing protein (.2) Lus10012238 [exp] 940 / 0 AT3G51770 1092 / 0.0 ARABIDOPSIS ETHYLENE OVERPRODUCER 1, tetratricopeptide repeat (TPR)-containing protein (.1), tetratricopeptide repeat (TPR)-containing protein (.2) Lus10022084 [exp] 871 / 0 AT4G02680 1267 / 0.0 ETO1-like 1 (.1) Lus10012472 [exp] 168 / 1e-47 AT3G51770 230 / 2e-70 ARABIDOPSIS ETHYLENE OVERPRODUCER 1, tetratricopeptide repeat (TPR)-containing protein (.1), tetratricopeptide repeat (TPR)-containing protein (.2) Lus10012510 [exp] 163 / 4e-42 AT3G51770 178 / 3e-35 ARABIDOPSIS ETHYLENE OVERPRODUCER 1, tetratricopeptide repeat (TPR)-containing protein (.1), tetratricopeptide repeat (TPR)-containing protein (.2) Lus10010040 [exp] 121 / 6e-32 AT3G51770 165 / 3e-48 ARABIDOPSIS ETHYLENE OVERPRODUCER 1, tetratricopeptide repeat (TPR)-containing protein (.1), tetratricopeptide repeat (TPR)-containing protein (.2) Lus10026455 [exp] 70 / 5e-14 AT3G51770 63 / 2e-12 ARABIDOPSIS ETHYLENE OVERPRODUCER 1, tetratricopeptide repeat (TPR)-containing protein (.1), tetratricopeptide repeat (TPR)-containing protein (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF00515 [poplar] [flax] TPR_1 Tetratricopeptide repeat
Representative CDS sequence Show only first row Show all	>Potri.009G075300.1 pacid=42770874 polypeptide=Potri.009G075300.1.p locus=Potri.009G075300 ID=Potri.009G075300.1.v4.1 annot-version=v4.1 ATGCATGGTTTTAAGCTCCTTGATAGATTCAAGAGCACCCAAGTCCATGCTTTAAGCCCCCAAGATAGTAACCCCTGTTCAAGAGGCAAACTTTCGAAAT GTAAATTTACAAACACTGGCTCAGTAGCTCAAGCTTTGCTCCCTTGTGGACTCCCAACAACTGAGCTCCTTGAACCTTCTATAGACTCTTACTTGAAACC TATAGACTATGTGGAATCTTTAGCTGAGATTTATAGACGCCTAAATACCTGCTCGCAAACCGATAAATCATTATTATGCATCGAGCAGTTTTCGATTTTG CGAGGATTAGGTGATCCTAAGTTGCTTAGAAGGTGCCTTTGCGCAGCAAGGCAATATGCTATTGATGTGCACTCAAAGGTAGTGCTTTCTGCCTGGTTAA GGTTTGAGAGGAGAGAAGACGAGTTCATTGGTGTGTCATCAAAGGATTGTAGTGGGTACATCCTTGAATGTCCTATGGCTGCTTTGGTTTCTGGATGCGA TCCCAATTCGATTTATGATCATTGCCAATGCGGTCAAGATAATCTTGAGGCGGTTGATAATCAAATATTGATGGGAAATGAAGGCTCCAGTTTGGAGGAG GATAGTGATGTTTCATTTTGCATTGGTGATGAGTTGGTTCATTGTGTTAGATTCAAAATTGCTTCTCTTTCGAGCCCATTTAAGGCAATGCTATATGGTA GCTTTGTCGAGTCAAGAAGAGATAAGATTGATTTTTCAAAGATTGGGATATCTGTCAAGGGGATGAGAGCTGTGCAAGTGTACAGTAGGACTGGGAGAGT TGATTTATTTTGCCCTGAGATTGTTTTGGAGTTGCTTTCTTTTGCAAACAGGTTTTGTTGTGAGGAGTTGAAGTGTGCTTGTGATGCTCATTTGGCTTCA TTGGTCTGTGGGACTGAGGATGCGTTGATTCTTATCGATCATGGCTTGGAGGAAAGGGCAAATCTTCTCGTAGCCTCTTGTTTGCAGGTGTTTCTAAGAG AGCTCCCAAATTCTTTGTATAACCACAAAGTGATGAGTGTTTTTTGTAATTCAGAGGCAAGGGAGAGATTGGCCATGCTGGGCCATGCTTCCTTCTTGCT CTATTATTTCCTGAGCCAGGTTGCCATGGAGGAGAATGTGGCATCAAACGCAGCAGTGATGTTATTGGAGGGGTTGGAAGAGTTTGCAACAGAAAAGTGG CAGAAGGCACTTGCTTTGCATCAACTGGGTTGCGTAATGCTCGAGAGAAAAGAGTACAAGGGTGCCCAATTCTATTTTGAGGCAGCTGTCGAGGCAGGTC ACGTTTATTCATTAGCAGGTGTTGCAAGGACCAAGTACAAACAAGGGCAACAATATTCGGCATTTAGGTTGATGAACTCTCTTATTTTCAAGCATAAACC AGTTGGGTGGATGTACCAAGAGCGATCTCTGTATGGTGTTGGACAGGAGAAGATAATGGATATGAATACTGCAACTGAACTGGATCCAACCCTTTCATTT CCATACAAATTCAGAGCTGTTATGAAGGTGGAAGAGAAGCAGATTAGAGCAGCTATCACAGAGATTGATAAAATTATCGGCTTCAAGCTCTCACCTGATT GTCTTGAGTTGAGAGCGTGGTTCTTCATTGCTCTTGAGGATTTTGAAAGTGCTTTGAGAGATATTCGAGCACTGCTAACCTTGGAACCAAAGTACATGAT GTTTCATGGGAGGGTGAGTGGAGATCACTTGGTTGAGCTTCTCAGCCATCGCATTCGGCTATGGAATCTGGCCGACTGCTGGATGCAACTTTATGAACGA TGGTCTTCTGTCGATGACATTGGCTCTCTGGCTGTCTTACATCAGATGCTGTCAAATGATCCTGCAAAGAGCCTACTGTGGTTTCGGCAATCTTTGCTTC TTTTGCGGTTAAATTGTCAGAAGGCTGCAATGCGCTGTTTGCGGTTGGCTAGAAACCATACCAGTTCTGTGCACGAAAGGCTGATATATGAAGGATGGCT TTTATTCGACTCTGGCCATCGTGAAGAAGCTCTCTCTAGGGCTGAGAAATCCATTTCGATCCAAAGGTCATTTGAAGCTTTCTTCCTTATGGCATATACA TTAGCTGATACGAATCTGGATCCTGAATCTTCATCTACTGTCATCCAACTTCTGGAGGAAGCTCTTAGATGCCCTTCAGATGGTCTTAGGAAAGGACAAG CATTGAATAATTTAGGAAGTATTTATGTGGATTGTGGTAAGCTGGATCAGGCTGCAGACTGCTACATGAATGCCCTTAACATCAAACATACAAGAGCCCA TCAAGGTCTAGCGCGTGTCTATCATTTAAAAAATCAACGAAAAGCTGCATTTGATGAGATGACCAAGTTAATAGAGAAGGCACATAGTAGTGCATCAGCA TATGAGAAACGATCAGAATACTGTGACCGTGAGAAGGCAAAAGATGACCTTAATATGGCAACACAACTGGATCCTCTAAGAACATACCCATACAGATACA GAGCAGCAGTGCTAATGGATGACCAAAAGGAAACTGAAGCTTTAGAAGAGCTTACTAAGGCCATAGCTTTCAAGCCTGAGTTGCAAATGCTCCATCTTCG AGCGGCATTTTATGAATCAATGGGAGACAAAACCTCTGCTCGTCAAGATTGTGAGGCAGCTCTCTGCCTGGACCAAAACCACACGGACACACTTAATCTG TACAATAGAACACAGGACCAAGCTACAAGAAGCATTTAA
AA sequence Show only first row Show all	>Potri.009G075300.1 pacid=42770874 polypeptide=Potri.009G075300.1.p locus=Potri.009G075300 ID=Potri.009G075300.1.v4.1 annot-version=v4.1 MHGFKLLDRFKSTQVHALSPQDSNPCSRGKLSKCKFTNTGSVAQALLPCGLPTTELLEPSIDSYLKPIDYVESLAEIYRRLNTCSQTDKSLLCIEQFSIL RGLGDPKLLRRCLCAARQYAIDVHSKVVLSAWLRFERREDEFIGVSSKDCSGYILECPMAALVSGCDPNSIYDHCQCGQDNLEAVDNQILMGNEGSSLEE DSDVSFCIGDELVHCVRFKIASLSSPFKAMLYGSFVESRRDKIDFSKIGISVKGMRAVQVYSRTGRVDLFCPEIVLELLSFANRFCCEELKCACDAHLAS LVCGTEDALILIDHGLEERANLLVASCLQVFLRELPNSLYNHKVMSVFCNSEARERLAMLGHASFLLYYFLSQVAMEENVASNAAVMLLEGLEEFATEKW QKALALHQLGCVMLERKEYKGAQFYFEAAVEAGHVYSLAGVARTKYKQGQQYSAFRLMNSLIFKHKPVGWMYQERSLYGVGQEKIMDMNTATELDPTLSF PYKFRAVMKVEEKQIRAAITEIDKIIGFKLSPDCLELRAWFFIALEDFESALRDIRALLTLEPKYMMFHGRVSGDHLVELLSHRIRLWNLADCWMQLYER WSSVDDIGSLAVLHQMLSNDPAKSLLWFRQSLLLLRLNCQKAAMRCLRLARNHTSSVHERLIYEGWLLFDSGHREEALSRAEKSISIQRSFEAFFLMAYT LADTNLDPESSSTVIQLLEEALRCPSDGLRKGQALNNLGSIYVDCGKLDQAADCYMNALNIKHTRAHQGLARVYHLKNQRKAAFDEMTKLIEKAHSSASA YEKRSEYCDREKAKDDLNMATQLDPLRTYPYRYRAAVLMDDQKETEALEELTKAIAFKPELQMLHLRAAFYESMGDKTSARQDCEAALCLDQNHTDTLNL YNRTQDQATRSI

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G51770		ATEOL1, ETO1	ARABIDOPSIS ETHYLENE OVERPRODU...		Potri.009G075300 [exp]	0	1
AT4G22120			ERD (early-responsive to dehyd...		Potri.004G006000 [exp]	2.23	0.9113
AT2G20650			RING/U-box superfamily protein...		Potri.017G012600 [exp]	2.82	0.9251
AT1G19870		IQD32	IQ-domain 32 (.1)		Potri.005G236200 [exp]	5.29	0.9193
AT1G33800			Protein of unknown function (D...		Potri.013G102200 [exp]	6.32	0.9152
AT4G27430		CIP7	COP1-interacting protein 7 (.1...		Potri.011G122900 [exp]	7.00	0.9055	Pt-CIP7.1
AT3G59690		IQD13	IQ-domain 13 (.1)		Potri.013G127200 [exp]	8.77	0.8991
AT1G52760		LysoPL2	lysophospholipase 2 (.1)		Potri.001G175000 [exp]	10.39	0.9057
AT5G67210		IRX15-L	IRX15-LIKE, Protein of unknown...		Potri.005G141300 [exp]	10.53	0.9157
AT3G60380			unknown protein		Potri.014G045300 [exp]	13.41	0.8788
AT2G04850			Auxin-responsive family protei...		Potri.014G161700 [exp]	13.78	0.8881

Compare expression of checked genes

Potri.009G075300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.