Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G40270 446 / 1e-150 Protein kinase family protein (.1.2) AT3G56050 435 / 6e-146 Protein kinase family protein (.1.2) AT4G18640 422 / 7e-139 MRH1 morphogenesis of root hair 1, Leucine-rich repeat protein kinase family protein (.1) AT5G45840 414 / 1e-135 Leucine-rich repeat protein kinase family protein (.1.2) AT5G58540 391 / 3e-131 Protein kinase superfamily protein (.1.2.3) AT5G07150 348 / 1e-111 Leucine-rich repeat protein kinase family protein (.1) AT1G63430 262 / 7e-78 Leucine-rich repeat protein kinase family protein (.1.2) AT5G41180 228 / 3e-65 leucine-rich repeat transmembrane protein kinase family protein (.1) AT5G48380 156 / 5e-40 BIR1 BAK1-interacting receptor-like kinase 1 (.1) AT1G06840 155 / 3e-39 Leucine-rich repeat protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G280200 [exp] 694 / 0 AT2G40270 430 / 2e-144 Protein kinase family protein (.1.2) Potri.008G072100 [exp] 519 / 8e-177 AT2G40270 451 / 2e-153 Protein kinase family protein (.1.2) Potri.010G185300 [exp] 503 / 2e-170 AT2G40270 434 / 1e-146 Protein kinase family protein (.1.2) Potri.004G058100 [exp] 445 / 3e-147 AT4G18640 694 / 0.0 morphogenesis of root hair 1, Leucine-rich repeat protein kinase family protein (.1) Potri.011G067400 [exp] 439 / 6e-145 AT4G18640 678 / 0.0 morphogenesis of root hair 1, Leucine-rich repeat protein kinase family protein (.1) Potri.001G106600 [exp] 265 / 9e-79 AT1G63430 839 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Potri.003G124800 [exp] 261 / 4e-77 AT1G63430 858 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Potri.010G178050 [exp] 167 / 5e-44 AT5G48380 710 / 0.0 BAK1-interacting receptor-like kinase 1 (.1) Potri.002G240000 [exp] 167 / 1e-43 AT5G48380 721 / 0.0 BAK1-interacting receptor-like kinase 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031290 [exp] 564 / 0 AT4G18640 457 / 7e-153 morphogenesis of root hair 1, Leucine-rich repeat protein kinase family protein (.1) Lus10031860 [exp] 558 / 0 AT5G45840 491 / 4e-166 Leucine-rich repeat protein kinase family protein (.1.2) Lus10017439 [exp] 480 / 4e-161 AT5G45840 457 / 1e-152 Leucine-rich repeat protein kinase family protein (.1.2) Lus10007516 [exp] 476 / 1e-159 AT5G45840 463 / 4e-155 Leucine-rich repeat protein kinase family protein (.1.2) Lus10029228 [exp] 393 / 1e-130 AT5G45840 444 / 5e-151 Leucine-rich repeat protein kinase family protein (.1.2) Lus10007281 [exp] 384 / 8e-123 AT5G45840 568 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Lus10015277 [exp] 377 / 1e-121 AT5G45840 548 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Lus10025400 [exp] 377 / 2e-121 AT5G45840 608 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Lus10008486 [exp] 268 / 6e-80 AT1G63430 878 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Lus10001489 [exp] 263 / 5e-78 AT1G63430 879 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF07714 [poplar] [flax] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase CL0016 [poplar] [flax] PF08263 [poplar] [flax] LRRNT_2 Leucine rich repeat N-terminal domain
Representative CDS sequence Show only first row Show all	>Potri.009G075400.1 pacid=42771731 polypeptide=Potri.009G075400.1.p locus=Potri.009G075400 ID=Potri.009G075400.1.v4.1 annot-version=v4.1 ATGACGGGTGGATGGTGGAGATTGAACCGGGTGAAGCTTCGCATGGAGGTTTTGATGCTGGTTCTGTTGTTATTTCATCAAAGTTTTAGCTTTTGCTGGT CTCTAAACACAGAGGGTTTGGCTTTGTTGAGATTGAGAGAGAGAGTGGAGACAGACCCATTTGGAGTTTTATCGAATTGGATTGAGAAAGATGGAGATAT TGATCCTTGTTCTTGGTTCGGTGTCGAATGCTCTGATGGCAAAGTTGTGATCTTGCATCTGACAAATCTGTGTCTTGGAGGAACACTGACACCTCAACTT GGAAGGCTAGCTTACTTAAAATCAATCAATCTACGCAACAATTCTTTCTACGGAAACATTCCTAGAGAGATTGGAGAATTGAAGGAGCTGGAGGCGTTGG ACTTGGGATATAATAACTTTAGTGGACCATTTCCTTCGAACTTCGCAAATAATCTATCACTGACTACCCTCTTGCTTGACAATAACAAGTTTCTTGATAG CGTATCTCCTGAACTAAATGAGCTTATGGTGCTTTCTGAAGTTCAGGCAGATGAAAATCAGTTACGAGCTTCTTGTTGCTGCAGAGATTTTACTTGGAAC ATTGTTCATTCTGGAAATATAGCTCATCGGATGCTGCTGCAGGTGGCAGCTGCTCCAAATCCACCCATAGCAAACAATCGTCATAAAGCACATCAAAGTG GTTCTGAAGCATCGCCTTCACCGTCTTTTTTTCCTCAAGGATCTCAATTATCACCATCACTGGCACCCTCAGACTCACCATTTTTATCACCATCACCATC ATTTTCCCCATCACCATCTCCTTCAGAGTCTCCGTCATTTTCTCCAGCAGAATACTCCTCCACTTTTCCTTTCCCCCCTTCCCCCTCACCCATGATCGCA CCAAATCCAGCTTCACCTGCTCCAGAAAATCCACCTAGTGTCTTTATTGTACCACCACAGCGTGATTGGATGTCAATGGTCCCTGCTCCAAGTCCAAATC ATTTGGGACAATCAAAGTCAAAACATCACACTGCTCTCATTGCTGGTGTTATTGCTGGCTCTATGTTCGCTTTGATTTCAGCCATTGGCATTTTCTTCTT CAGAAGCAGCAAGGTAGTCACTGTCAGACCTTGGGCCACAGGCCTAAGTGGGCAGCTACAAAACGCATTTGTAACAGGTGTGCCAAAACTCAAGAGATCA GAACTTGAAGCTGCTTGTGAAGATTTCAGTAACATAATTGGCTCCTTTTCAGATGGCACGGCATACAAGGGGACACTATCAAGTGGCGTTGAAATTGCTG TGATGTCTACTGCAGTAAGATCTCATGAAGACTGGTTGAAGAATTTAGAAGCACAATTCAGAAAGAAGATTGACACATTGTCAAAAATGAACCACAAGAA TTTTGTGAACCTTATTGGATTTTGTGAAGAAAATGAGCCTTTCACAAGAATGATGGTTTTTGAATATGCTCCAAATGGAACTCTCTTTGAACATCTGCAT ATAAAAGAAGCTGAACACTTGGACTGGGGAATGAGATTACGAATAGCAATGGGCATGGCATATTGCCTCGATTACATGCATCAACTAACTCCACCTATAG CCCATAAACACCTGCAGTCATCGACAATATATCTGACTGAAGACTATGCAGCTAAAATATCAGATTTCAGTTTTGGGAATGATGCAACAGCAGCAAAGAT TGGATCAGCATCCATGGAGCTTTTAGAATCCCAAACATCAGATCCAGAGGGCAATATTTACAGTTTTGGGGTAATTTTGTTTGAAATGATAACTGGCAGG ATCCCATATGCAGTGGACAATGGCTCTCTTGCCGACTGGGCATCAGACTATCTGAGAGGAGAGCGATCCTTAAAAGAAATAGTGGATCCAACTCTAAAAT CTTTCCAAGAGAATGAGCTCGAGAAACTGTCCGAAGTAATAAGAAATTGCATCCATCCTGATCCAAAACAGAGACCAACGATGAAAGAGATTGCCTCTAA GTTAAAAGAGATCACAGCAATGGAACCTGATGGAGCAACACCAAAATTATCACCCCTTTGGTGGGCTGAACTTGAAATTATGTCTACAGAAGGAAGTTGA
AA sequence Show only first row Show all	>Potri.009G075400.1 pacid=42771731 polypeptide=Potri.009G075400.1.p locus=Potri.009G075400 ID=Potri.009G075400.1.v4.1 annot-version=v4.1 MTGGWWRLNRVKLRMEVLMLVLLLFHQSFSFCWSLNTEGLALLRLRERVETDPFGVLSNWIEKDGDIDPCSWFGVECSDGKVVILHLTNLCLGGTLTPQL GRLAYLKSINLRNNSFYGNIPREIGELKELEALDLGYNNFSGPFPSNFANNLSLTTLLLDNNKFLDSVSPELNELMVLSEVQADENQLRASCCCRDFTWN IVHSGNIAHRMLLQVAAAPNPPIANNRHKAHQSGSEASPSPSFFPQGSQLSPSLAPSDSPFLSPSPSFSPSPSPSESPSFSPAEYSSTFPFPPSPSPMIA PNPASPAPENPPSVFIVPPQRDWMSMVPAPSPNHLGQSKSKHHTALIAGVIAGSMFALISAIGIFFFRSSKVVTVRPWATGLSGQLQNAFVTGVPKLKRS ELEAACEDFSNIIGSFSDGTAYKGTLSSGVEIAVMSTAVRSHEDWLKNLEAQFRKKIDTLSKMNHKNFVNLIGFCEENEPFTRMMVFEYAPNGTLFEHLH IKEAEHLDWGMRLRIAMGMAYCLDYMHQLTPPIAHKHLQSSTIYLTEDYAAKISDFSFGNDATAAKIGSASMELLESQTSDPEGNIYSFGVILFEMITGR IPYAVDNGSLADWASDYLRGERSLKEIVDPTLKSFQENELEKLSEVIRNCIHPDPKQRPTMKEIASKLKEITAMEPDGATPKLSPLWWAELEIMSTEGS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G40270			Protein kinase family protein ...		Potri.009G075400 [exp]	0	1
AT1G10720			BSD domain-containing protein ...		Potri.014G014200 [exp]	1.00	0.9526
AT5G58160			actin binding (.1)		Potri.006G185601 [exp]	2.44	0.9243
AT3G23090			TPX2 (targeting protein for Xk...		Potri.010G076200 [exp]	2.82	0.9523
AT1G27500			Tetratricopeptide repeat (TPR)...		Potri.015G075300 [exp]	7.48	0.9182
AT2G30490		REF3, CYP73A5, ...	REDUCED EPRDERMAL FLUORESCENCE...		Potri.013G157900 [exp]	7.48	0.9297	C4H2,CYP73.2
AT5G54670		KATC, ATK3	KINESIN-LIKE PROTEIN IN ARABID...		Potri.001G416300 [exp]	7.54	0.9307	ATK2.2
AT3G05270			Plant protein of unknown funct...		Potri.007G098500 [exp]	10.72	0.9289
AT2G32810		BGAL9	beta-galactosidase 9, beta gal...		Potri.017G057900 [exp]	11.22	0.9074	BGAL9.1
AT1G27210			ARM repeat superfamily protein...		Potri.010G038900 [exp]	12.36	0.9041
AT5G55970			RING/U-box superfamily protein...		Potri.001G371200 [exp]	14.14	0.9168

Compare expression of checked genes

Potri.009G075400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.