Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G58530 199 / 1e-63 Glutaredoxin family protein (.1) AT5G13810 141 / 6e-41 Glutaredoxin family protein (.1) AT5G39865 138 / 1e-38 Glutaredoxin family protein (.1) AT3G57070 134 / 9e-37 Glutaredoxin family protein (.1) AT2G41330 130 / 1e-35 Glutaredoxin family protein (.1) AT5G06470 125 / 7e-35 Glutaredoxin family protein (.1) AT3G28850 123 / 1e-32 Glutaredoxin family protein (.1) AT1G64500 119 / 1e-31 Glutaredoxin family protein (.1) AT3G11773 109 / 8e-30 Thioredoxin superfamily protein (.1.2) AT5G03870 113 / 3e-29 Glutaredoxin family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G280400 [exp] 337 / 3e-118 AT5G58530 234 / 4e-77 Glutaredoxin family protein (.1) Potri.008G072200 [exp] 195 / 4e-62 AT5G58530 177 / 7e-55 Glutaredoxin family protein (.1) Potri.003G198100 [exp] 148 / 1e-43 AT5G13810 294 / 1e-100 Glutaredoxin family protein (.1) Potri.T125406 [exp] 148 / 1e-43 AT5G13810 294 / 1e-100 Glutaredoxin family protein (.1) Potri.001G026600 [exp] 148 / 1e-43 AT5G13810 312 / 1e-107 Glutaredoxin family protein (.1) Potri.006G041800 [exp] 147 / 8e-42 AT3G57070 340 / 3e-114 Glutaredoxin family protein (.1) Potri.016G038600 [exp] 145 / 4e-41 AT3G57070 317 / 5e-105 Glutaredoxin family protein (.1) Potri.010G243700 [exp] 134 / 3e-37 AT5G01420 213 / 3e-65 Glutaredoxin family protein (.1) Potri.008G016100 [exp] 124 / 3e-33 AT5G01420 209 / 2e-63 Glutaredoxin family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040949 [exp] 171 / 2e-53 AT5G58530 164 / 2e-50 Glutaredoxin family protein (.1) Lus10007517 [exp] 165 / 2e-50 AT5G58530 153 / 1e-45 Glutaredoxin family protein (.1) Lus10017438 [exp] 149 / 2e-44 AT5G58530 132 / 1e-37 Glutaredoxin family protein (.1) Lus10018025 [exp] 143 / 2e-40 AT3G57070 293 / 2e-96 Glutaredoxin family protein (.1) Lus10039537 [exp] 141 / 2e-40 AT5G13810 261 / 4e-87 Glutaredoxin family protein (.1) Lus10024164 [exp] 140 / 4e-40 AT5G13810 259 / 2e-86 Glutaredoxin family protein (.1) Lus10017335 [exp] 137 / 1e-38 AT5G39865 345 / 1e-117 Glutaredoxin family protein (.1) Lus10001669 [exp] 136 / 2e-38 AT5G39865 340 / 1e-115 Glutaredoxin family protein (.1) Lus10009838 [exp] 138 / 3e-37 AT5G05450 721 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10021255 [exp] 124 / 7e-35 AT5G06470 185 / 7e-59 Glutaredoxin family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0172 [poplar] [flax] Thioredoxin PF00462 [poplar] [flax] Glutaredoxin Glutaredoxin
Representative CDS sequence Show only first row Show all	>Potri.009G075600.1 pacid=42772030 polypeptide=Potri.009G075600.1.p locus=Potri.009G075600 ID=Potri.009G075600.1.v4.1 annot-version=v4.1 ATGTGGCGGCCGCGTGCTAAATCGACAGTTAAGATTCGCGACACCCCGTCTTCTCCTTTCTCTTTCTCCACTTTCAAAGATATCCAAAATCTTTGCATAG AGGATCATCCCTCCAGTCCCATAAAAAAATCCTCCTCCATTTTCCACCGGGTCCGGCTCGCCACCACCTTCCTCCGCTCCCTCTCATTGTCCTTATCCGA GCCAGAACACAATGCCACTCCAGCTCATAACAAAACGACAACACCACCGCTTCAAGAACAACCTCTTATCACAATCCCGGGTGCCGACAAACGAATTGTC GTCTACTACACAAGCCTACGTGTGGTTCGTTCAACATTTGAAGACTGCAAGACCGTGCAATCTATCCTACGTGGATTCCGCGTTTTAATCGACGAACGAG ATCTCTCAATGGACTCAAGTTTTTTAAACGAGTTAAATCAGATCTTTTCCGGCCGTGGTAATTGTGGTCGGAAGCTGACATTGCCACGTGTCTTTATCGG AGGGAGATACATGGGTGGAGCCGAAGAAATCAGACAGTTAAACGAATCAGGTGAGCTCAAGAAATTTATAGAAGGATTGCCTGTGGTGGATTCTGGTGTT TGTGACGTGTGTGGTGGTTATAGGTTTATTTTATGTGGTCAATGTAGTGGGAGTCATAAGTTGTATATAGAGAAAGCTGGGTTTAAATCCTGTACGGCTT GTAATGAGAATGGTTTGATCAGGTGCCCTTCTTGTGCTGTCTAA
AA sequence Show only first row Show all	>Potri.009G075600.1 pacid=42772030 polypeptide=Potri.009G075600.1.p locus=Potri.009G075600 ID=Potri.009G075600.1.v4.1 annot-version=v4.1 MWRPRAKSTVKIRDTPSSPFSFSTFKDIQNLCIEDHPSSPIKKSSSIFHRVRLATTFLRSLSLSLSEPEHNATPAHNKTTTPPLQEQPLITIPGADKRIV VYYTSLRVVRSTFEDCKTVQSILRGFRVLIDERDLSMDSSFLNELNQIFSGRGNCGRKLTLPRVFIGGRYMGGAEEIRQLNESGELKKFIEGLPVVDSGV CDVCGGYRFILCGQCSGSHKLYIEKAGFKSCTACNENGLIRCPSCAV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G58530			Glutaredoxin family protein (....		Potri.009G075600 [exp]	0	1
AT5G58530			Glutaredoxin family protein (....		Potri.001G280400 [exp]	1.00	0.9368
AT1G13635			DNA glycosylase superfamily pr...		Potri.010G137300 [exp]	2.44	0.9126
AT3G59690		IQD13	IQ-domain 13 (.1)		Potri.019G095700 [exp]	8.48	0.8494
AT3G59690		IQD13	IQ-domain 13 (.1)		Potri.013G127200 [exp]	9.16	0.8843
AT2G41770			Protein of unknown function (D...		Potri.006G051000 [exp]	11.22	0.8845
AT2G46300			Late embryogenesis abundant (L...		Potri.014G094400 [exp]	12.96	0.8791
AT4G39070	CO		B-box zinc finger family prote...		Potri.004G161000 [exp]	14.69	0.8461
AT1G09610			Protein of unknown function (D...		Potri.003G003801 [exp]	16.73	0.8894
AT4G08810		SUB1	calcium ion binding (.1)		Potri.001G005500 [exp]	17.23	0.8757
AT5G67210		IRX15-L	IRX15-LIKE, Protein of unknown...		Potri.005G141300 [exp]	18.65	0.8920

Compare expression of checked genes

Potri.009G075600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.