Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G30110 1734 / 0 ATUBA1, MOS5 MODIFIER OF SNC1 5, ubiquitin-activating enzyme 1 (.1) AT5G06460 1726 / 0 ATUBA2 ,UBA 2 ARABIDOPSIS THALIANA UBIQUITIN ACTIVATING ENZYME 2, ubiquitin activating enzyme 2 (.1) AT2G21470 129 / 1e-30 EMB2764, ATSAE2, SAE2 EMBRYO DEFECTIVE 2764, SUMO-activating enzyme 2 (.1.2.3) AT5G19180 89 / 3e-18 ECR1 E1 C-terminal related 1 (.1) AT5G50680 77 / 1e-14 ATSAE1B ARABIDOPSIS THALIANA SUMO ACTIVATING ENZYME 1B, SUMO activating enzyme 1B (.1.2) AT5G50580 77 / 1e-14 AT-SAE1-2, SAE1B SUMO-activating enzyme 1B (.1.2) AT4G24940 74 / 1e-13 ATSAE1A, AT-SAE1-1, SAE1A SUMO-activating enzyme 1A (.1) AT1G05180 57 / 5e-08 AXR1 AUXIN RESISTANT 1, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3) AT2G32410 57 / 6e-08 AXL1, AXL AXR1- like 1, AXR1-like (.1.2) AT1G05350 48 / 3e-05 NAD(P)-binding Rossmann-fold superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G280600 [exp] 1961 / 0 AT2G30110 1751 / 0.0 MODIFIER OF SNC1 5, ubiquitin-activating enzyme 1 (.1) Potri.009G075800 [exp] 1954 / 0 AT2G30110 1762 / 0.0 MODIFIER OF SNC1 5, ubiquitin-activating enzyme 1 (.1) Potri.009G120200 [exp] 129 / 1e-30 AT2G21470 900 / 0.0 EMBRYO DEFECTIVE 2764, SUMO-activating enzyme 2 (.1.2.3) Potri.004G158900 [exp] 125 / 4e-29 AT2G21470 896 / 0.0 EMBRYO DEFECTIVE 2764, SUMO-activating enzyme 2 (.1.2.3) Potri.008G204000 [exp] 91 / 1e-18 AT5G19180 654 / 0.0 E1 C-terminal related 1 (.1) Potri.010G031900 [exp] 90 / 2e-18 AT5G19180 663 / 0.0 E1 C-terminal related 1 (.1) Potri.012G100800 [exp] 84 / 5e-17 AT4G24940 490 / 4e-176 SUMO-activating enzyme 1A (.1) Potri.015G099000 [exp] 80 / 1e-15 AT4G24940 498 / 4e-179 SUMO-activating enzyme 1A (.1) Potri.001G355800 [exp] 71 / 2e-12 AT5G55130 683 / 0.0 SIRTINOL RESISTANT 1, "co-factor for nitrate, reductase and xanthine dehydrogenase 5", co-factor for nitrate, reductase and xanthine dehydrogenase 5 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012507 [exp] 1746 / 0 AT2G30110 1706 / 0.0 MODIFIER OF SNC1 5, ubiquitin-activating enzyme 1 (.1) Lus10031862 [exp] 1725 / 0 AT5G06460 1686 / 0.0 ARABIDOPSIS THALIANA UBIQUITIN ACTIVATING ENZYME 2, ubiquitin activating enzyme 2 (.1) Lus10031292 [exp] 1718 / 0 AT5G06460 1706 / 0.0 ARABIDOPSIS THALIANA UBIQUITIN ACTIVATING ENZYME 2, ubiquitin activating enzyme 2 (.1) Lus10022666 [exp] 793 / 0 AT2G30110 768 / 0.0 MODIFIER OF SNC1 5, ubiquitin-activating enzyme 1 (.1) Lus10022665 [exp] 756 / 0 AT2G30110 748 / 0.0 MODIFIER OF SNC1 5, ubiquitin-activating enzyme 1 (.1) Lus10017479 [exp] 130 / 9e-31 AT2G21470 900 / 0.0 EMBRYO DEFECTIVE 2764, SUMO-activating enzyme 2 (.1.2.3) Lus10028804 [exp] 112 / 5e-25 AT2G21470 855 / 0.0 EMBRYO DEFECTIVE 2764, SUMO-activating enzyme 2 (.1.2.3) Lus10034043 [exp] 89 / 6e-18 AT5G19180 722 / 0.0 E1 C-terminal related 1 (.1) Lus10010507 [exp] 89 / 7e-18 AT5G19180 716 / 0.0 E1 C-terminal related 1 (.1) Lus10008977 [exp] 85 / 6e-17 AT4G24940 473 / 1e-168 SUMO-activating enzyme 1A (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [poplar] [flax] NADP_Rossmann PF00899 [poplar] [flax] ThiF ThiF family CL0063 [poplar] [flax] PF10585 [poplar] [flax] UBA_e1_thiolCys Ubiquitin-activating enzyme active site CL0063 [poplar] [flax] PF16190 [poplar] [flax] E1_FCCH Ubiquitin-activating enzyme E1 FCCH domain CL0063 [poplar] [flax] PF16191 [poplar] [flax] E1_4HB Ubiquitin-activating enzyme E1 four-helix bundle
Representative CDS sequence Show only first row Show all	>Potri.009G075700.2 pacid=42772443 polypeptide=Potri.009G075700.2.p locus=Potri.009G075700 ID=Potri.009G075700.2.v4.1 annot-version=v4.1 ATGTTGATGTTAGGTTTAGGATTAGGGTTTATGATTTCGGTACCGATCTTTGTTGCGACTGTAATCGCTAACAACAGCTTATCTTTGATTTCGATTGTGA TGATTTGTGGCTTGTTTGGCAGTTTACTGTACTTTATGCTTCCTAAAAGGCTACCAGTTGAAGCTGTGTTGGTAGAAGGAGAAGGAAGTGAAAACAACAT AGCAAAAGATTCGTCATCGGTCTTTAAGAAGCATCGGGTCGATTGTTATTTGGAATCGACCGCCGCCAATAGTAATAAGAAAACTAGTAGCGTTATTGGT AATTGCAGTGATATTAGTAGAGAGAGTGGTGGTGCTGAAGAGAAGGTGAGTATGGCGCTTGGTGATTCAAATCCATCGGAGATTGATGAGGATCTTCATA GCCGGCAGCTTGCTGTTTACGGTAGGGAGACGATGCGGAGGCTCTTTGCTTCTAATGTTCTCGTTTCTGGGATGCAAGGACTTGGTGTTGAGATTGCTAA AAACCTTGTTCTTGCTGGTGTCAAGTCCGTAACATTGCATGATGAAGGGGTGGTGGAGCTGTGGGATTTATCCAGCAACTTTGTTTTCTCAGAAAATGAT GTTGGCACTAATAGAGCCCTTGCTTCTGTTCAGAAGTTGCAGGAACTCAACAATGCAGTGGTCATCTCTACTTTAACTACAAAATTGACAAAAGAGCATC TTTCCAAGTTCCAGGCTGTTGTGTTTACTGATGTCACTTTTGAGAAAGCCATCGAGTTCAACGACTATTGCCATGATCATAAGCCTCCTATTTCTTTCAT CAAGGCTGAAGTAAGAGGCCTTTTTGGTTCCATTTTTTGCGACTTTGGACCTGAATTCACCGTGTTTGATGTTGATGGAGAGGAACCACACACGGGCATA GTTGCATCCATCAGCAATGACAACCCTGCATTAGTGTCATGCGTTGATGATGAAAGGCTTGAGTTTCAAGATGGGGATCTTGTTGCTTTCTCCGAAGTTA AGGGAATGACAGAACTAAATGATGGAAAACCTAGAAAGATTAAAAACGCCAGAGCATATTCATTTTTTCTTGAGGAGGACACCTCTGACTTTGGTATCTA TGAGAAAGGTGGCATTGTTACACAGGTAAAAGAGCCGAAGGTGTTGAACTTTAAGACTTTGAGGGAAGCGATTAAAGATCCTGGTGATTTTCTTTTGAGT GATTTCTCAAAGTTTGATCGCCCACCTCTCCTACACTTGGCATTTCAAGCTCTGGACAAGTTTGTGTCTGAGATGGGTCGCCTCCCTGTTGCTGGTTCAG AAGAGGATGCTCAGAAGCTTGTGTCTCTTGCCAGTCTCATCAATGAAAACTCTGGAGATGGTAGGGTTGAAGACATCAATCCAAAACTTCTGCGACATTT TGCCTTTGGTGCCAGGGCTGTACTGAATCCTATGGCTGCTATGTTTGGTGGTATTGTGGGACAAGAGGTTGTCAAAGCATGTTCTGGAAAGTTTCATCCC CTGTTTCAGTTCTTTTATTTTGATTCTGTGGAATCACTTCCCACAGCTAATTTGGATCCCAGTGAATTCATGCCATTAAACAGCCGTTATGATGCTCAAA TTTCTGTTTTTGGATCCAATCTTCAGAAGAAACTGGAGGGTGCCAATTTGTTTGTAGTAGGATCTGGTGCTCTAGGCTGTGAATTCTTGAAGAACTTAGC GCTGATGGGTGTTTCATGTGGTGAACAAGGAAAGCTGACAATAACTGATGATGATGTAATAGAGAAGAGTAATTTGAGCAGGCAGTTTCTCTTCCGTGAC TGGAATATTGGACAGGCCAAATCCACAGTCGCTGCTTCAGCTGCTGCATTAATAAATCCTCATCTCAAGATTGAAGCGCTGCAGAATCGTGTTGGCTCTG AAACAGAGAATGTCTTTGATGATACCTTCTGGGAGAACTTAACCGCTGTTGTGAATGCTTTGGACAATGTCAATGCGAGACTTTATGTTGATCAGAGGTG CTTGTACTTCCAAAAGCCTCTTCTCGAGTCTGGAACCTTAGGTGCCAAATGCAACACTCAGATGGTCATTCCTCACCTAACTGAAAACTACGGTGCTTCT AGGGACCCACCTGAGAAACAAGCTCCGATGTGCACCGTGCACTCCTTCCCGCACAACATTGACCATTGCTTGACATGGGCTCGATCGGAGTTTGAGGGTT TGGTGGAGAAAACGCCTGCAGAAGTGAATGCCTATCTATCAAATCCAGTTGAATATACTAATGCTATGATAAAAGCTGGTGATGCCCAGTCAAGGGATAT CTTGGAACATGTTCTTGAGTGCCTCGAGAAGGAAAAATGCGAGACATTACAGGATTGCATTTCATGGGCTCGTTTAAAGTTTGAAGATTACTTCTCTGAC CGTGTGAAGCAGTTGATTTACACATTTCCTGAAGATGCATCAACTAGTACCGGGGTTCCATTTTGGTCAGCCCCAAAGCGATTCCCTCATCCACTCCAGT TCTCAACTACAGATCTTAGCCACCTTCATTTTGTAATGGCTGCATCAGTACTACGAGCAGAAACTTTTGGGATCCCAGTTCCTGACTGGATCAGGAATCC TAAGATGGTAGCTGAAGCTGTTGACAAGGTGATTGTGCCGGACTTTCAGCCAAGGGAAGGTGTGAAGATTGAGACAGATGAGAAGGCTACTAATTTGTCT AATGCATCTGTGGATGATGCAGCAATAATCAATGAACTAATTAGGAAATTAGAGCTGTGCAGGGAGAACCTGCCTGCGGGGTTCAGGATGAAGCCAATTC AGTTTGAGAAGGATGATGATACAAACTACCATATGGATTTGATAGCTGGGCTTGCCAACATGAGAGCTAGAAACTACAGTATTCCTGAGGTTGACAAACT GAAAGCGAAGTTTATTGCTGGAAGGATCATCCCTGCTATCGCAACCTCCACAGCTATGGCCACTGGTCTTGTGTGCCTGGAGCTGTACAAGGTTCTGGAT GGTGGACACAAAGTGGAGGACTACCGCAATACATTTGCCAACCTTGCACTTCCTCTGTTCTCCATGGCCGAGCCTGTCCCACCCAAGGTTATCAAGCATC AGGATATGAGCTGGACAGTCTGGGACAGGTGGACCCTGAAAAACAATCCTACCTTAAGGGAACTTCTGCAATGGTTTACAGACAAGGGGTTGAGTGCTTA CAGCATTTCATTTGGTAGCTGCCTGCTCTACAATAGCATGTTCCCTCGGCACAGGGAGAGAATGGACAGGAAGGTGGTTGATCTGGTGAGGGAAGTGGCC AAAGTTGAATTGCCTGCTTATCGCCGCCACTTCGATGTTGTCGTGGCATGCGATGATGATGAGGGCAATGATGTTGACATCCCTACAGTATCCATTTACT TCCGTTAG
AA sequence Show only first row Show all	>Potri.009G075700.2 pacid=42772443 polypeptide=Potri.009G075700.2.p locus=Potri.009G075700 ID=Potri.009G075700.2.v4.1 annot-version=v4.1 MLMLGLGLGFMISVPIFVATVIANNSLSLISIVMICGLFGSLLYFMLPKRLPVEAVLVEGEGSENNIAKDSSSVFKKHRVDCYLESTAANSNKKTSSVIG NCSDISRESGGAEEKVSMALGDSNPSEIDEDLHSRQLAVYGRETMRRLFASNVLVSGMQGLGVEIAKNLVLAGVKSVTLHDEGVVELWDLSSNFVFSEND VGTNRALASVQKLQELNNAVVISTLTTKLTKEHLSKFQAVVFTDVTFEKAIEFNDYCHDHKPPISFIKAEVRGLFGSIFCDFGPEFTVFDVDGEEPHTGI VASISNDNPALVSCVDDERLEFQDGDLVAFSEVKGMTELNDGKPRKIKNARAYSFFLEEDTSDFGIYEKGGIVTQVKEPKVLNFKTLREAIKDPGDFLLS DFSKFDRPPLLHLAFQALDKFVSEMGRLPVAGSEEDAQKLVSLASLINENSGDGRVEDINPKLLRHFAFGARAVLNPMAAMFGGIVGQEVVKACSGKFHP LFQFFYFDSVESLPTANLDPSEFMPLNSRYDAQISVFGSNLQKKLEGANLFVVGSGALGCEFLKNLALMGVSCGEQGKLTITDDDVIEKSNLSRQFLFRD WNIGQAKSTVAASAAALINPHLKIEALQNRVGSETENVFDDTFWENLTAVVNALDNVNARLYVDQRCLYFQKPLLESGTLGAKCNTQMVIPHLTENYGAS RDPPEKQAPMCTVHSFPHNIDHCLTWARSEFEGLVEKTPAEVNAYLSNPVEYTNAMIKAGDAQSRDILEHVLECLEKEKCETLQDCISWARLKFEDYFSD RVKQLIYTFPEDASTSTGVPFWSAPKRFPHPLQFSTTDLSHLHFVMAASVLRAETFGIPVPDWIRNPKMVAEAVDKVIVPDFQPREGVKIETDEKATNLS NASVDDAAIINELIRKLELCRENLPAGFRMKPIQFEKDDDTNYHMDLIAGLANMRARNYSIPEVDKLKAKFIAGRIIPAIATSTAMATGLVCLELYKVLD GGHKVEDYRNTFANLALPLFSMAEPVPPKVIKHQDMSWTVWDRWTLKNNPTLRELLQWFTDKGLSAYSISFGSCLLYNSMFPRHRERMDRKVVDLVREVA KVELPAYRRHFDVVVACDDDEGNDVDIPTVSIYFR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G30110		ATUBA1, MOS5	MODIFIER OF SNC1 5, ubiquitin-...		Potri.009G075700 [exp]	0	1
AT2G30110		ATUBA1, MOS5	MODIFIER OF SNC1 5, ubiquitin-...		Potri.009G075800 [exp]	2.00	0.7100	ATUBA1.3
AT3G14750			unknown protein		Potri.001G382700 [exp]	2.82	0.7345
AT3G53970			proteasome inhibitor-related (...		Potri.016G103800 [exp]	8.77	0.6736
AT3G18860			transducin family protein / WD...		Potri.009G112184 [exp]	11.87	0.7253
AT1G35220			unknown protein		Potri.002G100800 [exp]	12.24	0.6616
AT5G57870		eIFiso4G1	eukaryotic translation Initiat...		Potri.018G104100 [exp]	15.87	0.6466
AT4G10570		UBP9	ubiquitin-specific protease 9 ...		Potri.011G152500 [exp]	17.49	0.6858
AT4G33650		APEM1, DRP3A, A...	ABERRANT PEROXISOME MORPHOLOGY...		Potri.017G041800 [exp]	18.33	0.6487	Pt-ADL2.1
AT5G46210		CUL4, ATCUL4	cullin4 (.1)		Potri.004G132900 [exp]	20.00	0.5956
AT4G34370		ATARI1	ARABIDOPSIS ARIADNE 1, ARIADNE...		Potri.009G111200 [exp]	22.97	0.6606

Compare expression of checked genes

Potri.009G075700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.