Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	ATUBA1.3
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G30110 1763 / 0 ATUBA1, MOS5 MODIFIER OF SNC1 5, ubiquitin-activating enzyme 1 (.1) AT5G06460 1734 / 0 ATUBA2 ,UBA 2 ARABIDOPSIS THALIANA UBIQUITIN ACTIVATING ENZYME 2, ubiquitin activating enzyme 2 (.1) AT2G21470 126 / 1e-29 EMB2764, ATSAE2, SAE2 EMBRYO DEFECTIVE 2764, SUMO-activating enzyme 2 (.1.2.3) AT5G19180 91 / 1e-18 ECR1 E1 C-terminal related 1 (.1) AT5G50580 81 / 3e-16 AT-SAE1-2, SAE1B SUMO-activating enzyme 1B (.1.2) AT5G50680 81 / 3e-16 ATSAE1B ARABIDOPSIS THALIANA SUMO ACTIVATING ENZYME 1B, SUMO activating enzyme 1B (.1.2) AT4G24940 74 / 8e-14 ATSAE1A, AT-SAE1-1, SAE1A SUMO-activating enzyme 1A (.1) AT2G32410 58 / 3e-08 AXL1, AXL AXR1- like 1, AXR1-like (.1.2) AT1G05180 57 / 8e-08 AXR1 AUXIN RESISTANT 1, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3) AT1G05350 50 / 9e-06 NAD(P)-binding Rossmann-fold superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G280600 [exp] 2088 / 0 AT2G30110 1751 / 0.0 MODIFIER OF SNC1 5, ubiquitin-activating enzyme 1 (.1) Potri.009G075700 [exp] 1979 / 0 AT2G30110 1734 / 0.0 MODIFIER OF SNC1 5, ubiquitin-activating enzyme 1 (.1) Potri.009G120200 [exp] 127 / 7e-30 AT2G21470 900 / 0.0 EMBRYO DEFECTIVE 2764, SUMO-activating enzyme 2 (.1.2.3) Potri.004G158900 [exp] 122 / 3e-28 AT2G21470 896 / 0.0 EMBRYO DEFECTIVE 2764, SUMO-activating enzyme 2 (.1.2.3) Potri.008G204000 [exp] 92 / 5e-19 AT5G19180 654 / 0.0 E1 C-terminal related 1 (.1) Potri.010G031900 [exp] 91 / 8e-19 AT5G19180 663 / 0.0 E1 C-terminal related 1 (.1) Potri.012G100800 [exp] 82 / 3e-16 AT4G24940 490 / 4e-176 SUMO-activating enzyme 1A (.1) Potri.015G099000 [exp] 75 / 5e-14 AT4G24940 498 / 4e-179 SUMO-activating enzyme 1A (.1) Potri.001G355800 [exp] 73 / 5e-13 AT5G55130 683 / 0.0 SIRTINOL RESISTANT 1, "co-factor for nitrate, reductase and xanthine dehydrogenase 5", co-factor for nitrate, reductase and xanthine dehydrogenase 5 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012507 [exp] 1754 / 0 AT2G30110 1706 / 0.0 MODIFIER OF SNC1 5, ubiquitin-activating enzyme 1 (.1) Lus10031862 [exp] 1729 / 0 AT5G06460 1686 / 0.0 ARABIDOPSIS THALIANA UBIQUITIN ACTIVATING ENZYME 2, ubiquitin activating enzyme 2 (.1) Lus10031292 [exp] 1728 / 0 AT5G06460 1706 / 0.0 ARABIDOPSIS THALIANA UBIQUITIN ACTIVATING ENZYME 2, ubiquitin activating enzyme 2 (.1) Lus10022666 [exp] 781 / 0 AT2G30110 768 / 0.0 MODIFIER OF SNC1 5, ubiquitin-activating enzyme 1 (.1) Lus10022665 [exp] 774 / 0 AT2G30110 748 / 0.0 MODIFIER OF SNC1 5, ubiquitin-activating enzyme 1 (.1) Lus10017479 [exp] 127 / 8e-30 AT2G21470 900 / 0.0 EMBRYO DEFECTIVE 2764, SUMO-activating enzyme 2 (.1.2.3) Lus10028804 [exp] 109 / 5e-24 AT2G21470 855 / 0.0 EMBRYO DEFECTIVE 2764, SUMO-activating enzyme 2 (.1.2.3) Lus10034043 [exp] 91 / 2e-18 AT5G19180 722 / 0.0 E1 C-terminal related 1 (.1) Lus10010507 [exp] 91 / 2e-18 AT5G19180 716 / 0.0 E1 C-terminal related 1 (.1) Lus10008977 [exp] 81 / 9e-16 AT4G24940 473 / 1e-168 SUMO-activating enzyme 1A (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [poplar] [flax] NADP_Rossmann PF00899 [poplar] [flax] ThiF ThiF family CL0063 [poplar] [flax] PF09358 [poplar] [flax] E1_UFD Ubiquitin fold domain CL0063 [poplar] [flax] PF10585 [poplar] [flax] UBA_e1_thiolCys Ubiquitin-activating enzyme active site CL0063 [poplar] [flax] PF16190 [poplar] [flax] E1_FCCH Ubiquitin-activating enzyme E1 FCCH domain CL0063 [poplar] [flax] PF16191 [poplar] [flax] E1_4HB Ubiquitin-activating enzyme E1 four-helix bundle
Representative CDS sequence Show only first row Show all	>Potri.009G075800.7 pacid=42772947 polypeptide=Potri.009G075800.7.p locus=Potri.009G075800 ID=Potri.009G075800.7.v4.1 annot-version=v4.1 ATGGGTGTTCGTAGCTTGTTTGGCCGTTTGCTATACTTTATGCTTCCTAAAAAGCGACCTGTTGAAGCAGAAGAAGCACCAGATAACAGCATATCAGATT CATCTTCTTTCAAAAAGAAACGGGTCGATTGCGATTTGGAATCGACTGTCATTTGTAACAAAAAAAGCTGTGTTACTGGTAATTGCAGCAACACCGAAAC CGAAACTAACAACCATTGTAAAGAGGAACACTTGATCATGGCACCTGGTGATTCGAACCCGATGGAGATTGACGAGGATCTTCACAGTCGGCAGCTTGCT GTTTATGGAAGGGAGACAATGCGAAGGCTTTTCGGTTCAAATGTTCTCGTTTCCGGGATGCAGGGTCTTGGTGCTGAGATTGCAAAGAACCTCATTCTCG CTGGTGTCAAGTCTGTGACATTGCACGATGAAGAAATAGTGGAGTTGTGGGATTTATCCAGCAACTTTGTCTTTTCAGAGAATGATGTTGGTAAGAACAG GGCCCTAGCGTCTGTTCAGAAGTTGCAAGATCTCAACAATGCAGTCAGCATCTCAACCTTAACTACAGAATTGACAACAGAACAACTTTCTAAGTTCCAG GCTGTTGTATTTACAGATCTCAATCTTGACAAAGCCATTGAGTTTAATGACTACTGCCATAATCACAAGCCTCCTATCTCTTTCATCAAGGCTGAAGTTA GAGGTCTCTTTGGTTCTGTGTTTTGTGACTTTGGACCTGAATTCACAGTGTTTGATGTTGATGGAGAGGATGCACACACTGGTATAATTGCATCTATCAG CAATGATAACCCTGCACTGGTGTCATTTGTTGATGATGAAAGGCTTGAATTTCAAGATGGGGATCTTGTTGTTTTCTCTGAAGTGAAGGGAATGACAGAA CTTAATGATGGAAAACCAAGAAAGATTAAAAATACCAGACCATATTCATTTACTCTCGAGGAGGACACCACAAACTTTGCTACCTATGAGAAAGGCGGGA TTGTCACACAGGTGAAACAGCCCAAGGTGTTGAATTTTAAGCCATTGAGAGAAGCAATCAAAGATCCTGGTGAATTTCTTTTGAGTGATTTCTCCAAGTT TGACCGTCCACCTCTCTTACACTTGGCATTCCAAGCACTGGACAAGTTTGTGTCCGAGATTGGTCGCTTCCCTGTTGCTGGTTCAGAAGAAGATGCTCAA AAGCTTATATCTCAGGCAACTCACATCAATGAAAACTCAGGAGGTGCGAGGGTGGAGGACATTAATCCAAAACTTCTGCGGCACTTTGCCTTTGGTGCCA GGGCTGTACTGAATCCTATGGCCGCTATGTTTGGTGGTCTGGTGGGACAAGAGGTTGTCAAAGCATGTTCCGGAAAGTTTCATCCTCTCTTTCAGTTCTT TTATTTTGACTCTGTGGAATCACTTCCTACCGCTAATTTGGATCCCAGTAATTTCAAGCCACTAAATAGCCGTTATGATGCACAAATCTCAGTTTTTGGG TCCAAGCTTCAGAAGAAGCTGGAGGATGCTAACTTGTTTGTTGTAGGATCTGGTGCACTTGGCTGTGAATTCTTGAAGAATTTAGCACTGATGGGTGTTT CATGTGGTGAACAAGGGAAGCTGACAATAACTGATGATGATGTGATAGAGAAGAGTAACTTGAGCAGGCAGTTTCTCTTCCGTGATTGGAACATTGGACA GGCGAAATCCACTGTTGCAGCTTCTGCTGCTGCATTAATAAATCCTCATCTCAAGATTGAAGCGCTGCAGAATCGTGTTGGCTCTGAAACAGAGAATGTC TTTGATGATACCTTCTGGGAGAACTTAACTGCTGTTGTGAATGCTTTGGACAATGTCAATGCGAGACTTTATGTTGATCAGAGGTGCTTGTACTTCCAAA AGCCTCTTCTCGAGTCTGGAACCTTAGGTGCCAAATGCAACACTCAGATGGTCATTCCTCACCTGACTGAAAATTATGGCGCTTCAAGGGACCCACCTGA GAAACAAGCACCTATGTGCACTGTGCATTCATTCCCACATAACATTGACCATTGCTTGACATGGGCTCGATCCGAGTTCGAGGGTTTGGTGGAGAAAACC CCAGCAGAAGTGAATGCCTATTTATCAAATCCAGTTGAATATACTAATGCTATGAACAAAGCTGGTGATGCTCAGTCAAGGGACACTCTGGAACATGTTC TTGAGTGCCTTGAGAAGGAAAAATGTGAGACATTCCAGGATTGCATTACATGGGCTCGTTTAAGGTTTGAAGATTATTTTGCTGATCGGGTGAAGCAGTT GATTTTCACTTTCCCTGAGGATGCATCAACTAGTACTGGTGCTCCATTCTGGTCTGCCCCCAAGCGATTCCCCCATCCACTTCAGTTCTCAGTTGTAGAT CCAAGTCACCTCCATTTTGTCATGGCAGCATCAATATTGCGAGCAGAGACTTTTGGGATCTCAGTTCCTGAGTGGGCGAAGCATCCTAAGATGTTGGCTG AGGCTGTGGAGAAGGTGGTAGTGCCAGAATTTCAGCCAAGAGAAGACGCGAAAATTGAGACAGACGAGAAGGCTACCACCCTGTCTTCTGCATCTGTAGA TGATGCAGCGGTAATCAATGAACTTATCAAAAAATTAGAGCAGTGTAGGCAGAAGCTGCCACTTGGGTTCAGGATGACGCCAATTCAATTTGAGAAGGAT GATGATACAAACTACCACATGGATCTGATAGCTGGTCTCGCCAACATGAGAGCAAGAAACTACAGCATTCCTGAGGTTGACAAGCTGAAAGCCAAGTTTA TTGCTGGAAGGATCATCCCTGCTATAGCAACCTCCACAGCTATGGCTACTGGTCTTGTGTGCTTGGAGCTGTATAAGGTTCTGGATGGTGGACACAAAGT GGAGGACTACCGCAATACATTTGCCAACCTTGCACTTCCTCTGTTCTCCATGGCCGAGCCTGTCCCACCCAAGGTTATCAAGCATCAGGATATGAGCTGG ACAGTTTGGGACAGGTGGATCCTAAAAAACAATCCTACCTTGAGGGAACTTATGCAATGGCTCAAGGATAAGGGTCTTGATGCCTATAGCATTTCACATG GTAGTTGCCTGCTTTACAATAGCATGTTCCCTCGGCATAGAGACAGAATGGACAGGAAGGTGGTTGATCTGGTGAGGGAAGTGGCTAAAGTAGAGTTGCC TGCATATCGTCGCCACTTTGATGTCGTTGTGGCATGCGAGGATGATGAAGGCAATGATGTTGACATTCCTCCTGTATCTATTTACTTCAGTTAG
AA sequence Show only first row Show all	>Potri.009G075800.7 pacid=42772947 polypeptide=Potri.009G075800.7.p locus=Potri.009G075800 ID=Potri.009G075800.7.v4.1 annot-version=v4.1 MGVRSLFGRLLYFMLPKKRPVEAEEAPDNSISDSSSFKKKRVDCDLESTVICNKKSCVTGNCSNTETETNNHCKEEHLIMAPGDSNPMEIDEDLHSRQLA VYGRETMRRLFGSNVLVSGMQGLGAEIAKNLILAGVKSVTLHDEEIVELWDLSSNFVFSENDVGKNRALASVQKLQDLNNAVSISTLTTELTTEQLSKFQ AVVFTDLNLDKAIEFNDYCHNHKPPISFIKAEVRGLFGSVFCDFGPEFTVFDVDGEDAHTGIIASISNDNPALVSFVDDERLEFQDGDLVVFSEVKGMTE LNDGKPRKIKNTRPYSFTLEEDTTNFATYEKGGIVTQVKQPKVLNFKPLREAIKDPGEFLLSDFSKFDRPPLLHLAFQALDKFVSEIGRFPVAGSEEDAQ KLISQATHINENSGGARVEDINPKLLRHFAFGARAVLNPMAAMFGGLVGQEVVKACSGKFHPLFQFFYFDSVESLPTANLDPSNFKPLNSRYDAQISVFG SKLQKKLEDANLFVVGSGALGCEFLKNLALMGVSCGEQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAAALINPHLKIEALQNRVGSETENV FDDTFWENLTAVVNALDNVNARLYVDQRCLYFQKPLLESGTLGAKCNTQMVIPHLTENYGASRDPPEKQAPMCTVHSFPHNIDHCLTWARSEFEGLVEKT PAEVNAYLSNPVEYTNAMNKAGDAQSRDTLEHVLECLEKEKCETFQDCITWARLRFEDYFADRVKQLIFTFPEDASTSTGAPFWSAPKRFPHPLQFSVVD PSHLHFVMAASILRAETFGISVPEWAKHPKMLAEAVEKVVVPEFQPREDAKIETDEKATTLSSASVDDAAVINELIKKLEQCRQKLPLGFRMTPIQFEKD DDTNYHMDLIAGLANMRARNYSIPEVDKLKAKFIAGRIIPAIATSTAMATGLVCLELYKVLDGGHKVEDYRNTFANLALPLFSMAEPVPPKVIKHQDMSW TVWDRWILKNNPTLRELMQWLKDKGLDAYSISHGSCLLYNSMFPRHRDRMDRKVVDLVREVAKVELPAYRRHFDVVVACEDDEGNDVDIPPVSIYFS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G30110		ATUBA1, MOS5	MODIFIER OF SNC1 5, ubiquitin-...		Potri.009G075800 [exp]	0	1	ATUBA1.3
AT2G30110		ATUBA1, MOS5	MODIFIER OF SNC1 5, ubiquitin-...		Potri.009G075700 [exp]	2.00	0.7100
AT2G39800		ATP5CS, P5CS1	delta1-pyrroline-5-carboxylate...		Potri.010G198400 [exp]	13.49	0.6032	Pt-P5CS.1
AT5G09590		HSC70-5, mtHSC7...	HEAT SHOCK COGNATE, mitochondr...		Potri.009G079700 [exp]	15.55	0.6902
AT2G17200		DSK2	ubiquitin family protein (.1)		Potri.009G166000 [exp]	19.49	0.5638
AT5G65750			2-oxoglutarate dehydrogenase, ...		Potri.010G209000 [exp]	22.27	0.6479
AT4G13780			methionine--tRNA ligase, putat...		Potri.017G057700 [exp]	22.44	0.6345
AT4G18030			S-adenosyl-L-methionine-depend...		Potri.001G146400 [exp]	23.23	0.6402
AT5G03340			ATPase, AAA-type, CDC48 protei...		Potri.006G125500 [exp]	25.82	0.5904	CDC48.3
AT1G16900			Alg9-like mannosyltransferase ...		Potri.011G110800 [exp]	29.15	0.6258
AT2G41670			P-loop containing nucleoside t...		Potri.006G048900 [exp]	34.92	0.5911

Compare expression of checked genes

Potri.009G075800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.