Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G58520 787 / 0 Protein kinase superfamily protein (.1) AT5G07140 697 / 0 Protein kinase superfamily protein (.1) AT2G17700 157 / 2e-41 STY8 serine/threonine/tyrosine kinase 8, ACT-like protein tyrosine kinase family protein (.1) AT4G38470 153 / 9e-40 STY46 serine/threonine/tyrosine kinase 46, ACT-like protein tyrosine kinase family protein (.1) AT4G35780 152 / 2e-39 STY17 serine/threonine/tyrosine kinase 17, ACT-like protein tyrosine kinase family protein (.1) AT4G31170 144 / 2e-37 Protein kinase superfamily protein (.1.2.3.4) AT2G24360 130 / 8e-33 Protein kinase superfamily protein (.1) AT5G58950 127 / 5e-31 Protein kinase superfamily protein (.1) AT5G50000 123 / 2e-30 Protein kinase superfamily protein (.1) AT4G14780 122 / 3e-30 Protein kinase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G280700 [exp] 1022 / 0 AT5G58520 800 / 0.0 Protein kinase superfamily protein (.1) Potri.002G015400 [exp] 158 / 1e-41 AT4G38470 650 / 0.0 serine/threonine/tyrosine kinase 46, ACT-like protein tyrosine kinase family protein (.1) Potri.005G246500 [exp] 158 / 2e-41 AT4G38470 645 / 0.0 serine/threonine/tyrosine kinase 46, ACT-like protein tyrosine kinase family protein (.1) Potri.004G179457 [exp] 153 / 1e-40 AT4G38470 654 / 0.0 serine/threonine/tyrosine kinase 46, ACT-like protein tyrosine kinase family protein (.1) Potri.004G179100 [exp] 152 / 3e-40 AT4G35780 612 / 0.0 serine/threonine/tyrosine kinase 17, ACT-like protein tyrosine kinase family protein (.1) Potri.004G179514 [exp] 154 / 5e-40 AT4G38470 786 / 0.0 serine/threonine/tyrosine kinase 46, ACT-like protein tyrosine kinase family protein (.1) Potri.005G106200 [exp] 152 / 4e-39 AT4G35780 821 / 0.0 serine/threonine/tyrosine kinase 17, ACT-like protein tyrosine kinase family protein (.1) Potri.009G139400 [exp] 150 / 1e-38 AT4G38470 807 / 0.0 serine/threonine/tyrosine kinase 46, ACT-like protein tyrosine kinase family protein (.1) Potri.005G190200 [exp] 149 / 2e-38 AT4G38470 500 / 2e-172 serine/threonine/tyrosine kinase 46, ACT-like protein tyrosine kinase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031294 [exp] 823 / 0 AT5G58520 801 / 0.0 Protein kinase superfamily protein (.1) Lus10031864 [exp] 820 / 0 AT5G58520 805 / 0.0 Protein kinase superfamily protein (.1) Lus10025092 [exp] 158 / 3e-40 AT1G78610 779 / 0.0 mechanosensitive channel of small conductance-like 6 (.1) Lus10023989 [exp] 154 / 6e-40 AT4G38470 771 / 0.0 serine/threonine/tyrosine kinase 46, ACT-like protein tyrosine kinase family protein (.1) Lus10022653 [exp] 152 / 8e-40 AT4G38470 673 / 0.0 serine/threonine/tyrosine kinase 46, ACT-like protein tyrosine kinase family protein (.1) Lus10012517 [exp] 153 / 2e-39 AT4G35780 754 / 0.0 serine/threonine/tyrosine kinase 17, ACT-like protein tyrosine kinase family protein (.1) Lus10020374 [exp] 145 / 7e-38 AT4G31170 697 / 0.0 Protein kinase superfamily protein (.1.2.3.4) Lus10004153 [exp] 143 / 2e-35 AT2G17700 611 / 0.0 serine/threonine/tyrosine kinase 8, ACT-like protein tyrosine kinase family protein (.1) Lus10018895 [exp] 130 / 5e-32 AT4G35780 508 / 1e-175 serine/threonine/tyrosine kinase 17, ACT-like protein tyrosine kinase family protein (.1) Lus10028590 [exp] 130 / 1e-31 AT4G35780 506 / 9e-175 serine/threonine/tyrosine kinase 17, ACT-like protein tyrosine kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF00069 [poplar] [flax] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Potri.009G075900.1 pacid=42772464 polypeptide=Potri.009G075900.1.p locus=Potri.009G075900 ID=Potri.009G075900.1.v4.1 annot-version=v4.1 ATGGCAGGAGCACTAGAGTGCTGGTCAAGCAGAGCCAGCACAGACGAGGACATGGTTGAACAAGTCCTAATGAGAACACATGACAGATCAGAAACCTCAT CATCTTCAACAACGGAAGCAGCATCTCTACAACTATCTGATCAAAGCTCGAATCTTTCACTGAAAGACACTATTTCCTCATCTTCTGCAATGCAAAAAAA GCTTCAAAGATTGAGTCGAAATGTGTCCGAAGCCATTGCTTCACTTAAAAACTCATTGAATCTTGATTCACCACGTGATTCACAAGTGCAGCTAACGAGT TCTCAGCAGGGTAATTGTAGTGGTAATAAGAGTGAGAGATGTAGAAAGGTTGTGTGGGCCAGTGTTGTACGGAACCTTACCCAGTTGTATCCAGGGAGCC AGTTGCCTGAGAAGCTTGTGTCCAATATTAGAAAGCACTATGATTCTTTGCCACTCAGTTATGCTCAGGCAGGGTTTGATATGAAAGAAGTGTTTATGCA CATGAAGTTGATAGAGCAGGCACTAGTTGATGAGCAACCGGCAATAATGATACAAGAAGTGTCTGATGATGAGATACAGGGTGCTGTATACAAACTCACA TTTGCTTGTAACTCTTCCATTTCGTGGCCCGTAATGTCTGGTGCTTTAGATAGTGCTTCCATTTGTTGCAAGAAGATACAGATCTTTGAAAAGAAGGGAT TTACTCTTGGGGTTGTTCTTCTTTTAGTTCAAGCTGGACAAGCGAAATCATTTAAAGCTCGGATCGAGAATGCTTTAAAATCTTCTGTAAAGAAGTCCAA ATCAACCACAGTGAAGCTTCCATTTGGGCTTTGTGGGTGTCAAGAAGAGAATATTAGAGGAAACTTTGGTGAAATTGAAGAAGATCCCTGCGAACAAAAT TTTAGGAATGGCATTGAGAATCCGAATGTGAAGATTCAGCTCGAGATGCCCTTACCCACTTCTTCGATAGTTGTAGCGGTTGATGAGTGGCAAACGATTA ATTCTGGCGGGGATGAATTAGGGAAATGGCTTTTGAATTCTGATAATCTTGAATTAATTGATCAGATTGGACCAAGTTCCTTTAAGGGAGTTTATAAGGG CAAAAGGGTGGGAATTGAGAAGCTCAAAGGGTGTGATAAAGGGAATTCTTACGAGTTTGAGCTCCGTAAAGATCTGCTGGAATTAATGACTTGTGGTCAC AAGAACATTCATCAATTTTATGGCATTTGTGTTGATGAAAATCATGGATTGTGTGTGGTGACCAAATTGATGGAAGGTGGATCTGTTAACGAGTTAATGC TAAAGAATAAAAAGCTTCAACCCAAGGAGATAATGAGAATTGCTACAGATGTAGCAGAAGGAATGAGGTTTATGAATGATCATGGTGTTGCATATAGAGA CCTTAACACGCAACGAATTTTACTGGACCGGCACGGGAATGCTTGCTTAGGGGACATGGGCATAGTTACTGTTTGCAAGAGCATGGGTGAGGCAATGGAG TATGAAACAGACGGTTATCGTTGGCTAGCTCCAGAGATCATTGCAGGTGATCCAGAGAATATCACCGAGACATGGATGAGCAATGCATATAGTTTCGGGA TGGTGGTTTGGGAGATGGTGACTGGCGAGGCTGCTTATGCTGCATACTCACCTGTGCAGGCAGCAGTTGGTATAGCTGCTTGTGGCCTAAGACCAGAGAT CCCCAAGGACTGCCTGCTAATCCTAAGATCTCTGATGACCAAGTGCTGGAACAATTCCCCATCAAAGCGCCCTCAGTTCTCTGAAATTCTATCAATTTTG CTCCGGCCTAGCAACCAATATCAATAG
AA sequence Show only first row Show all	>Potri.009G075900.1 pacid=42772464 polypeptide=Potri.009G075900.1.p locus=Potri.009G075900 ID=Potri.009G075900.1.v4.1 annot-version=v4.1 MAGALECWSSRASTDEDMVEQVLMRTHDRSETSSSSTTEAASLQLSDQSSNLSLKDTISSSSAMQKKLQRLSRNVSEAIASLKNSLNLDSPRDSQVQLTS SQQGNCSGNKSERCRKVVWASVVRNLTQLYPGSQLPEKLVSNIRKHYDSLPLSYAQAGFDMKEVFMHMKLIEQALVDEQPAIMIQEVSDDEIQGAVYKLT FACNSSISWPVMSGALDSASICCKKIQIFEKKGFTLGVVLLLVQAGQAKSFKARIENALKSSVKKSKSTTVKLPFGLCGCQEENIRGNFGEIEEDPCEQN FRNGIENPNVKIQLEMPLPTSSIVVAVDEWQTINSGGDELGKWLLNSDNLELIDQIGPSSFKGVYKGKRVGIEKLKGCDKGNSYEFELRKDLLELMTCGH KNIHQFYGICVDENHGLCVVTKLMEGGSVNELMLKNKKLQPKEIMRIATDVAEGMRFMNDHGVAYRDLNTQRILLDRHGNACLGDMGIVTVCKSMGEAME YETDGYRWLAPEIIAGDPENITETWMSNAYSFGMVVWEMVTGEAAYAAYSPVQAAVGIAACGLRPEIPKDCLLILRSLMTKCWNNSPSKRPQFSEILSIL LRPSNQYQ

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G58520			Protein kinase superfamily pro...		Potri.009G075900 [exp]	0	1
AT1G38131			O-fucosyltransferase family pr...		Potri.002G087300 [exp]	6.32	0.8324
AT3G54260		TBL36	TRICHOME BIREFRINGENCE-LIKE 36...		Potri.008G020900 [exp]	9.48	0.8525
AT1G28340		AtRLP4	receptor like protein 4 (.1)		Potri.011G056800 [exp]	14.73	0.8201
AT2G06925		ATSPLA2-ALPHA, ...	PHOSPHOLIPASE A2-ALPHA, Phosph...		Potri.018G132100 [exp]	19.33	0.7969
AT3G56370			Leucine-rich repeat protein ki...		Potri.013G091000 [exp]	19.51	0.8291
AT5G39420		CDC2CAT	CDC2C (.1)		Potri.017G088200 [exp]	23.10	0.8207
AT4G29360			O-Glycosyl hydrolases family 1...		Potri.002G007300 [exp]	23.87	0.8249
AT3G20015			Eukaryotic aspartyl protease f...		Potri.005G063000 [exp]	26.32	0.7825
AT2G38970			Zinc finger (C3HC4-type RING f...		Potri.008G038450 [exp]	26.38	0.8289
AT3G10960		ATAZG1	AZA-guanine resistant1 (.1)		Potri.016G133800 [exp]	28.56	0.7867

Compare expression of checked genes

Potri.009G075900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.