Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G58510 1237 / 0 unknown protein AT5G55060 144 / 8e-36 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G280832 [exp] 233 / 5e-71 AT5G58510 164 / 3e-47 unknown protein Potri.001G280900 [exp] 154 / 1e-43 AT5G58510 79 / 5e-18 unknown protein Potri.011G089300 [exp] 129 / 1e-30 AT5G55060 770 / 0.0 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031287 [exp] 1276 / 0 AT5G58510 1122 / 0.0 unknown protein Lus10031857 [exp] 524 / 1e-179 AT5G58510 468 / 2e-158 unknown protein Lus10031851 [exp] 140 / 2e-37 AT5G58510 109 / 2e-27 unknown protein Lus10040061 [exp] 129 / 2e-30 AT5G55060 753 / 0.0 unknown protein Lus10043118 [exp] 115 / 3e-26 AT5G55060 630 / 0.0 unknown protein Lus10020371 [exp] 109 / 1e-25 AT4G26680 241 / 3e-75 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Lus10032631 [exp] 110 / 1e-24 AT5G55060 643 / 0.0 unknown protein Lus10000118 [exp] 103 / 3e-24 AT5G55060 319 / 1e-106 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF13890 [poplar] [flax] Rab3-GTPase_cat Rab3 GTPase-activating protein catalytic subunit
Representative CDS sequence Show only first row Show all	>Potri.009G076000.1 pacid=42771278 polypeptide=Potri.009G076000.1.p locus=Potri.009G076000 ID=Potri.009G076000.1.v4.1 annot-version=v4.1 ATGGCATCTACGAGCAAAGTGGACATATCTGGAGAAGACGACGATGAGCAGCTCGAAAGATTTGATGATTTTACGCTTGCCTCTTCCTGGGAAAGGTTTA TTTCTGAAATAGAAGCAGTTTGTAGGCAGTGGCTTGCCGATGGTCCAAATAATTTACTGGAAAAGGGTGCGGTTAAGTTGGATTTTTCGCAGAAGTTATA TAAGGTTAAAATGGAGTTGAAATACGCGATGAAAAGCTATAACATGGAGTATTATTTTGAAACCAGCAGCGGCGGCAAAATTGCGGATGGGAATAGTACA TTGCATGATTTGCAGTTATGCTTTGGAGTGAAGGATTTTTTGGTTATTGCTCCTCAAAGTGCCAGTGGTGTGGTTCTTGATTCACCCGAGGCTTCTAAGC TCTTAAGTGCAGTTGCAATTGCTTTGACAAATTGCTCCAGCTTGTGGCCAGCTTTTGTCCCAGTTCATGATCCTTCTAGGAAGGCTTATATTGGAATTCA AAATATGGGAACTGTTTTTACTAGAAGATTTGAGGCTGATCGTATTGGTAGCCAGGTTCCTGTAAGGCTCATGCACTTGGAAGGGTTATACGAGTTATTT GTCTCAAAGTTTGCCTACTCTACCCTGGACTTTGCTATGCATCTTTACAAAGTTCATTTTACAATGACATCAACATATAGAACCATTCACCATGATGATG ATGATCTCCAAAGTCTTGGTATTGAAAAAGAAGAATATGGTGACAATCATGGTAGTGAGACCCGCAGTAGATCGCAATGGGATGATGATTGTCCATGGAG TGAGTGGTATTCTGCTGAGGACCCAGTAAAAGGACTTGAATTGACTGCCACATGGTCTGAGAAGACTGTTGAAAGCTCTCTTGAAATGGCTGAACTTGAA AACGCATCACCTCATGAAGCTGAGAAGTGGATGATTCTTCCATTTCTGTCTCCAAATCTTGATAGTTCAGAAGGAAACAGAATTGGCTTTGCTTCCCAAT TGCGCCTTTTGGTTGATGCGCTAAATATGTCATTCGATGCCCAATTTATGGAGGATTTTGTGTCAGTTGAAAACCCTGGGTCTGATAATCTCAAGTCCTC GATGATTGTACCGCCACCAACTGTTCTTGATCGTGTGTTCAAAGATCTTTTTCATGAGGGATCACAAGTCGCTGCATTTGCTAAAGGCGAGCATAAGATT TCTCGAGCTATTAAAGGCGCACCATTTGGATCTCTTTTTGCACAGTTTTGCTTACATGCTCTATGGGTGGGGACCTGCAATATACGTGCTATTGCCGTGC TCTGGATAGAGTTTATTCGGGAAGTTCGTTGGTGTTGGGAAGAGTCACAGCCTCTACCTAAAATGCAAGCCAATGGCTCAATTGATCTATCCACTTGTTT GATTAACCAGAAACTGCAAATGCTTGCTATATGCATTGAGAAGAAGTGTGAAATGAATGAAGACTTCCAAGATTGTGTAGGCAGCAATGAGCATACCTAT GATCATATGGAGGAAGATAGTCCGGTTGGGGACAAGACAACCAATAAACAAAAACATGGTGATGAGTTTGATGGGATTCAAGACAGCCCTTTGACAAAGG ATGGTTTGCATGGGAGTGGAACGACGACGACATCAAGGCGTAGCATGAAGCACGGAGACAGTCTATCTACTGATTTGAAATCTTCTGATCATAACAGGAG GGGCTCAGCTGGTGCTGTGGGGTCTATGCAGCTTCTGAAGTCTTATAAGAGCATGCATGCCCCTTTCACACAGGATGCTCCACTTATGACAGAAGACATG CATGAAGAAAGACTGCAGGCTGTTGAAGCACTTGGGAATTCTTTTAGCTTTTCTGCTCAGTTGGAGAAAGATATCTTATCATCAGACATGTCAGCATTCA AAGCAGCAAATCCAGATTCTGTTTTTGAAGATTTTATTCGGTGGCATTCACCGGGAGATTGGGAGAATGATGATAATAAGGAAAGTGGAGCATCTAAAAG TCCAGTGACAAAGGGCTTGAAGGATGATTGGCCACCTCATGGCCGACTTTCACAACGGATGTCGGAGCAAGGGAATTTATGGCGAAAGATTTGGAACGAT ACTCCTGCTTTGCCAGTGTACGAGCAGAAACCCCTAATAGACCCCTTTCGAGAAGGAGAGAAGATCCTTCATTACTTAGAGACATTGCGGCCTCATCAAC TGCTTGAGCAGATGGTTTGTACCACCTTCAGAGTGTCAGCTGACACACTAAACCAGACTAATTTTGGAGGCTTGAAGCAGATGACAACAAAAATGGAGCA ACTGTACCGTACTATGGCTTCCACATTGAAGCCTTTGCAAACAAATCATGTATCTGGCAACAGTGAGACCATCGAAGACCTAAGACGCCTCTGTGTTATC TTTGAACACATTGAGAAGTTGCTTACTCTTGCATCTTCTCTTCATCGGACTTTCTTGCAGGCTCCACGCCTCTCTGAAACAATTTTCACCGACTACTACA ACTTCTATCTTCCAAGAATGGGAACAGGGTCACCGGGTTCTCTAGAAGTTGATGAAAAGGAGTTTGACGTCAAGTATCAAGTAATGGCACGCGAGAGACA GTGTGTATCGAATATGTTCACCCCCCCCACTGCTAACCAGTCATGGAGAAAAGTGCTAAGCATGGGTAATCTTCTAAATGGTCACGAACCTATTGTCAGG GAGATTATATTTTCAGTGCGTGATAGCTTGAGAAACAACCATTATGCAGCTCACAATCCAAGAGGTTTTCAACGAGAAATAGAGACATATCGAATGTATA TATGCGGAACCTCAAATGATCTTCGTGTAGCACTCTCTGTTACCTCGTGTGATTGA
AA sequence Show only first row Show all	>Potri.009G076000.1 pacid=42771278 polypeptide=Potri.009G076000.1.p locus=Potri.009G076000 ID=Potri.009G076000.1.v4.1 annot-version=v4.1 MASTSKVDISGEDDDEQLERFDDFTLASSWERFISEIEAVCRQWLADGPNNLLEKGAVKLDFSQKLYKVKMELKYAMKSYNMEYYFETSSGGKIADGNST LHDLQLCFGVKDFLVIAPQSASGVVLDSPEASKLLSAVAIALTNCSSLWPAFVPVHDPSRKAYIGIQNMGTVFTRRFEADRIGSQVPVRLMHLEGLYELF VSKFAYSTLDFAMHLYKVHFTMTSTYRTIHHDDDDLQSLGIEKEEYGDNHGSETRSRSQWDDDCPWSEWYSAEDPVKGLELTATWSEKTVESSLEMAELE NASPHEAEKWMILPFLSPNLDSSEGNRIGFASQLRLLVDALNMSFDAQFMEDFVSVENPGSDNLKSSMIVPPPTVLDRVFKDLFHEGSQVAAFAKGEHKI SRAIKGAPFGSLFAQFCLHALWVGTCNIRAIAVLWIEFIREVRWCWEESQPLPKMQANGSIDLSTCLINQKLQMLAICIEKKCEMNEDFQDCVGSNEHTY DHMEEDSPVGDKTTNKQKHGDEFDGIQDSPLTKDGLHGSGTTTTSRRSMKHGDSLSTDLKSSDHNRRGSAGAVGSMQLLKSYKSMHAPFTQDAPLMTEDM HEERLQAVEALGNSFSFSAQLEKDILSSDMSAFKAANPDSVFEDFIRWHSPGDWENDDNKESGASKSPVTKGLKDDWPPHGRLSQRMSEQGNLWRKIWND TPALPVYEQKPLIDPFREGEKILHYLETLRPHQLLEQMVCTTFRVSADTLNQTNFGGLKQMTTKMEQLYRTMASTLKPLQTNHVSGNSETIEDLRRLCVI FEHIEKLLTLASSLHRTFLQAPRLSETIFTDYYNFYLPRMGTGSPGSLEVDEKEFDVKYQVMARERQCVSNMFTPPTANQSWRKVLSMGNLLNGHEPIVR EIIFSVRDSLRNNHYAAHNPRGFQREIETYRMYICGTSNDLRVALSVTSCD

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G58510			unknown protein		Potri.009G076000 [exp]	0	1
AT3G11130			Clathrin, heavy chain (.1)		Potri.008G070600 [exp]	2.00	0.8624
AT3G04490			unknown protein		Potri.019G019100 [exp]	3.16	0.8645
AT3G54860		ATVPS33	VACUOLAR PROTEIN SORTING 33, S...		Potri.010G226600 [exp]	4.24	0.7870
AT3G10380		SEC8, ATSEC8	subunit of exocyst complex 8 (...		Potri.010G227100 [exp]	6.24	0.8380
AT5G19660		ATSBT6.1 ,ATS1P	SITE-1 protease (.1)		Potri.018G081400 [exp]	8.48	0.8078
AT5G12430		TPR16	tetratricopeptide repeat 16, H...		Potri.001G255000 [exp]	10.39	0.7957
AT3G10380		SEC8, ATSEC8	subunit of exocyst complex 8 (...		Potri.008G035300 [exp]	11.66	0.7898
AT5G07630			lipid transporters (.1)		Potri.001G126200 [exp]	13.60	0.8313
AT1G49040		SCD1	STOMATAL CYTOKINESIS-DEFECTIVE...		Potri.012G060800 [exp]	13.85	0.8198	SCD1.2
AT5G04420			Galactose oxidase/kelch repeat...		Potri.008G031200 [exp]	14.96	0.8195

Compare expression of checked genes

Potri.009G076000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.