Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G07090 259 / 2e-88 LSH6 LIGHT SENSITIVE HYPOCOTYLS 6, Protein of unknown function (DUF640) (.1) AT5G58500 238 / 3e-80 LSH5 LIGHT SENSITIVE HYPOCOTYLS 5, Protein of unknown function (DUF640) (.1) AT2G31160 213 / 4e-70 OBO1, LSH3 ORGAN BOUNDARY 1, LIGHT SENSITIVE HYPOCOTYLS 3, Protein of unknown function (DUF640) (.1) AT2G42610 211 / 1e-69 LSH10 LIGHT SENSITIVE HYPOCOTYLS 10, Protein of unknown function (DUF640) (.1), Protein of unknown function (DUF640) (.2) AT3G23290 209 / 2e-68 LSH4 LIGHT SENSITIVE HYPOCOTYLS 4, Protein of unknown function (DUF640) (.2) AT3G04510 200 / 4e-65 LSH2 LIGHT SENSITIVE HYPOCOTYLS 2, Protein of unknown function (DUF640) (.1) AT5G28490 199 / 1e-64 OBO2, LSH1 ORGAN BOUNDARY 2, LIGHT-DEPENDENT SHORT HYPOCOTYLS 1, Protein of unknown function (DUF640) (.1) AT1G78815 197 / 5e-64 LSH7 LIGHT SENSITIVE HYPOCOTYLS 7, Protein of unknown function (DUF640) (.1) AT4G18610 196 / 2e-63 LSH9 LIGHT SENSITIVE HYPOCOTYLS 9, Protein of unknown function (DUF640) (.1) AT1G16910 187 / 2e-60 LSH8 LIGHT SENSITIVE HYPOCOTYLS 8, Protein of unknown function (DUF640) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G281000 [exp] 273 / 1e-93 AT1G07090 251 / 4e-85 LIGHT SENSITIVE HYPOCOTYLS 6, Protein of unknown function (DUF640) (.1) Potri.009G157600 [exp] 217 / 5e-72 AT5G28490 228 / 7e-77 ORGAN BOUNDARY 2, LIGHT-DEPENDENT SHORT HYPOCOTYLS 1, Protein of unknown function (DUF640) (.1) Potri.005G225600 [exp] 217 / 8e-72 AT2G31160 232 / 6e-78 ORGAN BOUNDARY 1, LIGHT SENSITIVE HYPOCOTYLS 3, Protein of unknown function (DUF640) (.1) Potri.001G390900 [exp] 215 / 2e-71 AT1G78815 242 / 2e-82 LIGHT SENSITIVE HYPOCOTYLS 7, Protein of unknown function (DUF640) (.1) Potri.010G070700 [exp] 216 / 3e-71 AT2G31160 226 / 3e-75 ORGAN BOUNDARY 1, LIGHT SENSITIVE HYPOCOTYLS 3, Protein of unknown function (DUF640) (.1) Potri.002G037500 [exp] 214 / 9e-71 AT2G31160 230 / 3e-77 ORGAN BOUNDARY 1, LIGHT SENSITIVE HYPOCOTYLS 3, Protein of unknown function (DUF640) (.1) Potri.008G167700 [exp] 214 / 9e-71 AT3G23290 213 / 9e-71 LIGHT SENSITIVE HYPOCOTYLS 4, Protein of unknown function (DUF640) (.2) Potri.011G156600 [exp] 215 / 1e-70 AT3G23290 205 / 7e-67 LIGHT SENSITIVE HYPOCOTYLS 4, Protein of unknown function (DUF640) (.2) Potri.001G460400 [exp] 214 / 4e-70 AT2G31160 205 / 1e-66 ORGAN BOUNDARY 1, LIGHT SENSITIVE HYPOCOTYLS 3, Protein of unknown function (DUF640) (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022023 [exp] 227 / 6e-76 AT1G07090 226 / 3e-76 LIGHT SENSITIVE HYPOCOTYLS 6, Protein of unknown function (DUF640) (.1) Lus10042565 [exp] 221 / 1e-73 AT5G28490 233 / 1e-78 ORGAN BOUNDARY 2, LIGHT-DEPENDENT SHORT HYPOCOTYLS 1, Protein of unknown function (DUF640) (.1) Lus10029219 [exp] 217 / 9e-72 AT2G42610 238 / 6e-81 LIGHT SENSITIVE HYPOCOTYLS 10, Protein of unknown function (DUF640) (.1), Protein of unknown function (DUF640) (.2) Lus10007272 [exp] 214 / 9e-71 AT2G42610 241 / 4e-82 LIGHT SENSITIVE HYPOCOTYLS 10, Protein of unknown function (DUF640) (.1), Protein of unknown function (DUF640) (.2) Lus10024901 [exp] 214 / 3e-70 AT2G31160 249 / 3e-84 ORGAN BOUNDARY 1, LIGHT SENSITIVE HYPOCOTYLS 3, Protein of unknown function (DUF640) (.1) Lus10022918 [exp] 214 / 4e-70 AT2G31160 249 / 4e-84 ORGAN BOUNDARY 1, LIGHT SENSITIVE HYPOCOTYLS 3, Protein of unknown function (DUF640) (.1) Lus10029838 [exp] 212 / 9e-70 AT2G42610 261 / 3e-90 LIGHT SENSITIVE HYPOCOTYLS 10, Protein of unknown function (DUF640) (.1), Protein of unknown function (DUF640) (.2) Lus10038424 [exp] 210 / 9e-69 AT1G07090 247 / 9e-84 LIGHT SENSITIVE HYPOCOTYLS 6, Protein of unknown function (DUF640) (.1) Lus10020700 [exp] 207 / 6e-68 AT2G42610 258 / 1e-88 LIGHT SENSITIVE HYPOCOTYLS 10, Protein of unknown function (DUF640) (.1), Protein of unknown function (DUF640) (.2) Lus10023383 [exp] 204 / 1e-66 AT1G07090 246 / 2e-83 LIGHT SENSITIVE HYPOCOTYLS 6, Protein of unknown function (DUF640) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04852 [poplar] [flax] DUF640 Protein of unknown function (DUF640)
Representative CDS sequence Show only first row Show all	>Potri.009G076100.1 pacid=42772154 polypeptide=Potri.009G076100.1.p locus=Potri.009G076100 ID=Potri.009G076100.1.v4.1 annot-version=v4.1 ATGGACTCAACATCTGGAGTAGCTTCTGCGCCCGACCCGAATAGTGGAGAACCGGGTCCATCAGCGGGATCATCTTCAGCATCAGCATCACTGCCACAAC AACAGCAACCAGAGGGATCATCACCGCCAGCACCACCAAGTAGATACGAGTCGCAGAAGAGGAGAGACTGGAACACTTTCTTACAGTACTTAAAGAACCA CAAGCCACCATTAACTCTAGCTCGTTGCAGTGGTGCACATGTGATCGAGTTCTTGAAATACTTGGATCAATTTGGTAAGACCAAAGTCCACATAACGGGC TGTCCTTATTTTGGGCACCCGAACCCGCCAGCACCTTGCTCTTGTCCACTTAAGCAGGCCTGGGGTAGTCTTGATGCGCTAATCGGACGGCTTAGAGCTG CTTATGAAGAAAACGGTGGACGGCCAGAATCGAACCCTTTTGGGGCTAGAGCTGTCAGGATTTACTTGAGGGAAGTTCGAGAAGGTCAAGCTAAAGCTAG AGGGATTCCCTACGAGAAGAAGAAGCGAAAAAGGTCTAATGTTGCTGTTGCTACGGTGAATGTGTCGGTGGAGGCAGCTGGTGGTGGCTCTACTAGTGGT GGCGGAGGGGGGAGTGGTGATGCTGATAGTAGTGCTGCTGCAGCAGCTGCTGCTGCTACAACAACCGTATAG
AA sequence Show only first row Show all	>Potri.009G076100.1 pacid=42772154 polypeptide=Potri.009G076100.1.p locus=Potri.009G076100 ID=Potri.009G076100.1.v4.1 annot-version=v4.1 MDSTSGVASAPDPNSGEPGPSAGSSSASASLPQQQQPEGSSPPAPPSRYESQKRRDWNTFLQYLKNHKPPLTLARCSGAHVIEFLKYLDQFGKTKVHITG CPYFGHPNPPAPCSCPLKQAWGSLDALIGRLRAAYEENGGRPESNPFGARAVRIYLREVREGQAKARGIPYEKKKRKRSNVAVATVNVSVEAAGGGSTSG GGGGSGDADSSAAAAAAAATTTV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G07090		LSH6	LIGHT SENSITIVE HYPOCOTYLS 6, ...		Potri.009G076100 [exp]	0	1
AT3G53310	B3	REM20	AP2/B3-like transcriptional fa...		Potri.011G006050 [exp]	6.00	0.8957
AT2G46495			RING/U-box superfamily protein...		Potri.002G170300 [exp]	7.07	0.9174
AT4G29190	C3HZnF	AtOZF2	Arabidopsis thaliana oxidation...		Potri.006G234300 [exp]	7.21	0.8610
AT1G76500	AT-hook	SOB3, AHL29	SUPPRESSOR OF PHYB-4#3, AT-hoo...		Potri.005G257200 [exp]	12.16	0.8969
					Potri.011G145200 [exp]	12.44	0.8122
AT4G27950	AP2_ERF	CRF4	cytokinin response factor 4 (....		Potri.013G158500 [exp]	12.56	0.8107
AT4G23980	ARF	ARF9	auxin response factor 9 (.1.2)		Potri.001G088600 [exp]	13.19	0.8721
AT5G65210	bZIP	TGA1	bZIP transcription factor fami...		Potri.007G085700 [exp]	16.15	0.8412	Pt-STGA1.4
AT5G07475			Cupredoxin superfamily protein...		Potri.003G150300 [exp]	19.67	0.8958
AT2G15490		UGT73B4	UDP-glycosyltransferase 73B4 (...		Potri.001G302400 [exp]	22.24	0.8954

Compare expression of checked genes

Potri.009G076100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.