Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G58470 199 / 3e-59 TAF15b TBP-associated factor 15B (.1.2) AT1G50300 55 / 5e-08 TAF15 TBP-associated factor 15 (.1) AT5G02530 42 / 0.0007 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G281300 [exp] 234 / 3e-72 AT5G58470 198 / 1e-58 TBP-associated factor 15B (.1.2) Potri.010G170700 [exp] 54 / 1e-07 AT1G50300 320 / 2e-107 TBP-associated factor 15 (.1) Potri.008G085400 [exp] 49 / 3e-06 AT1G50300 339 / 6e-115 TBP-associated factor 15 (.1) Potri.004G087000 [exp] 45 / 5e-05 AT5G37720 213 / 2e-68 interacting with DNA-binding domain of Zn-finger PARP 1, ALWAYS EARLY 4 (.1.2) Potri.006G160500 [exp] 43 / 0.0004 AT4G28990 96 / 9e-22 RNA-binding protein-related (.1.2) Potri.018G083100 [exp] 43 / 0.0004 AT4G28990 124 / 3e-32 RNA-binding protein-related (.1.2) Potri.010G179000 [exp] 42 / 0.0006 AT5G16260 533 / 0.0 EARLY FLOWERING 9, RNA binding (RRM/RBD/RNP motifs) family protein (.1) Potri.017G129900 [exp] 41 / 0.001 AT1G66260 216 / 3e-69 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042268 [exp] 191 / 2e-55 AT1G50300 220 / 8e-67 TBP-associated factor 15 (.1) Lus10026388 [exp] 190 / 3e-55 AT5G58470 219 / 1e-66 TBP-associated factor 15B (.1.2) Lus10012902 [exp] 54 / 9e-08 AT1G50300 388 / 4e-134 TBP-associated factor 15 (.1) Lus10030555 [exp] 52 / 8e-07 AT1G50300 393 / 8e-135 TBP-associated factor 15 (.1) Lus10035556 [exp] 44 / 0.0002 AT2G36670 623 / 0.0 Eukaryotic aspartyl protease family protein (.1.2) Lus10014392 [exp] 44 / 0.0003 AT2G36660 594 / 0.0 poly(A) binding protein 7 (.1) Lus10005895 [exp] 42 / 0.0004 AT5G02530 185 / 8e-58 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10027733 [exp] 42 / 0.0009 AT2G36660 569 / 0.0 poly(A) binding protein 7 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0167 [poplar] [flax] Zn_Beta_Ribbon PF00641 [poplar] [flax] zf-RanBP Zn-finger in Ran binding protein and others
Representative CDS sequence Show only first row Show all	>Potri.009G076600.7 pacid=42771028 polypeptide=Potri.009G076600.7.p locus=Potri.009G076600 ID=Potri.009G076600.7.v4.1 annot-version=v4.1 ATGTCTGGTATGTATGGTCAAGAAGGCGATTCTGGTCCTCCATCTTACGGCGGTGGTGGCGGATACGGTGGAGGCGGCCCCGGAGCTGGCGCAGGTGGAT ATGGAGGCTATGGCGGAGGTGGCCGCGGTGGATATGGTGGTAGAGGTGGCGGTGGGAGCGTTGGCGGCAGAGGTGGGGGATATGGTGGTAATTCGCAAAG TCGAGGAGATGGATACCAGGGAGGAGATCGTGGAGGCAGAGGAGGCGGCGGCGGAAGAGGTGGTGGCCGAGGTGGAAGCGGCAGGGACGGTGACTGGCCT TGCCCTGATCCAAGCTGTGGGAATTTGAACTTTGCAAGAAGATCCGAGTGTAATAAATGCGGTACTCCTTCTCCTTCTGCTGGCCAAAATGATCGTGGTG GTGGTAACAGAGGAGGAAGTGGTGGAGGATATGGTGGTAATCGAGGGGGGAGAGGTGGTGGTAGTTATGACGGTAATAGAAGTAGCAATTCTAATGATGG AAGCAGAGGAGGTGGCAATAGAGGTGGATCTTATGGTGGTAATCAAGGAAGAGGTGATAGTGGATATAATCAGGCGCCACCACCATCTCTTCCTTCTTAT GGTGGTGGTGGAGGTAATTATCCACCTGCTCCTAACTCGTACAGTGCAAATGCTAATTATGGAATGGAAGCAGTTCCTCCACCAACAAGCTATACTGGTG GACCCACATCGTACCCTCCGTCTTATGGTGGCCCTGCTAGTGGTTATGGTGGTGATGCTACGGGTGAGGTGAGGAGTGGTGGACGAGGTGGTCAGCCTGG TGGTCGTGGTGGTGGTTCACGATATCCTGGAGGTAGTGGTTATGGGGCTGCTCCTGATGATGCCCCGGCTAAAATTAAGCAGTGTGATGATAATTGTGAT GATACTTGCGACAACTCAAGAATATACATATCTAATTTGCCACCTGATGTGACGATTGAAGAACTGAGAGAGCTTTTTGCTGGAATTGGACAAGTTGGAA GGATTAAGCAGAAGCGGGGCTATAAAGATCAATGGCCCTGGAATATAAAGATATACACAGATGAGAAGGGAAACAACAAAGGCGATGCATGTTTGGCTTA TGAAGACCCATCTGCTGCTCACTCTGCTGGCGGTTTTTACAACAATTATGACATGAGGGGCTATAAAATCAATGTTGCAATGGCAGAGAAGTCAGCCCCG AGGCAACCTGCACATGACCACGGCGGTGGTAGAGGTGGCTATGGTGGTGGAGATCGACGTAACTACCGAGATGCTGGAAATTCTGGCCCAGACAGGCATC AACATGGTGGAAACCGATCACGTCCTTACTGA
AA sequence Show only first row Show all	>Potri.009G076600.7 pacid=42771028 polypeptide=Potri.009G076600.7.p locus=Potri.009G076600 ID=Potri.009G076600.7.v4.1 annot-version=v4.1 MSGMYGQEGDSGPPSYGGGGGYGGGGPGAGAGGYGGYGGGGRGGYGGRGGGGSVGGRGGGYGGNSQSRGDGYQGGDRGGRGGGGGRGGGRGGSGRDGDWP CPDPSCGNLNFARRSECNKCGTPSPSAGQNDRGGGNRGGSGGGYGGNRGGRGGGSYDGNRSSNSNDGSRGGGNRGGSYGGNQGRGDSGYNQAPPPSLPSY GGGGGNYPPAPNSYSANANYGMEAVPPPTSYTGGPTSYPPSYGGPASGYGGDATGEVRSGGRGGQPGGRGGGSRYPGGSGYGAAPDDAPAKIKQCDDNCD DTCDNSRIYISNLPPDVTIEELRELFAGIGQVGRIKQKRGYKDQWPWNIKIYTDEKGNNKGDACLAYEDPSAAHSAGGFYNNYDMRGYKINVAMAEKSAP RQPAHDHGGGRGGYGGGDRRNYRDAGNSGPDRHQHGGNRSRPY

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G58470		TAF15b	TBP-associated factor 15B (.1....		Potri.009G076600 [exp]	0	1
AT1G21200	Trihelix		sequence-specific DNA binding ...		Potri.003G204700 [exp]	3.16	0.7276
AT2G44430			DNA-binding bromodomain-contai...		Potri.009G023100 [exp]	6.78	0.7184	BRD908
AT2G26280		CID7	CTC-interacting domain 7 (.1)		Potri.006G218900 [exp]	8.00	0.6975
AT5G67320		HOS15	high expression of osmotically...		Potri.007G050100 [exp]	24.67	0.6987
AT1G33360			ATP-dependent Clp protease (.1...		Potri.013G089500 [exp]	27.74	0.6553
AT1G60200			splicing factor PWI domain-con...		Potri.010G094700 [exp]	28.28	0.6941
AT4G27220			NB-ARC domain-containing disea...		Potri.001G426660 [exp]	30.96	0.6885
AT5G58470		TAF15b	TBP-associated factor 15B (.1....		Potri.001G281300 [exp]	32.61	0.6528
AT3G43590			zinc knuckle (CCHC-type) famil...		Potri.004G193500 [exp]	51.91	0.6393
AT2G25730			unknown protein		Potri.006G244900 [exp]	60.62	0.6703

Compare expression of checked genes

Potri.009G076600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.