Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G14750 174 / 7e-52 unknown protein AT2G30120 164 / 1e-48 unknown protein AT1G67170 117 / 3e-30 unknown protein AT1G55170 114 / 8e-30 unknown protein AT5G61920 63 / 2e-11 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G281400 [exp] 377 / 2e-132 AT2G30120 161 / 4e-48 unknown protein Potri.001G382700 [exp] 183 / 7e-56 AT3G14750 297 / 6e-100 unknown protein Potri.003G037900 [exp] 136 / 3e-38 AT1G55170 259 / 2e-86 unknown protein Potri.017G109700 [exp] 130 / 3e-34 AT1G67170 282 / 3e-91 unknown protein Potri.006G178100 [exp] 101 / 8e-25 AT5G61920 155 / 3e-46 unknown protein Potri.001G281500 [exp] 47 / 8e-06 AT1G07060 146 / 2e-43 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026389 [exp] 186 / 3e-57 AT2G30120 159 / 2e-47 unknown protein Lus10042267 [exp] 187 / 1e-56 AT2G30120 157 / 2e-45 unknown protein Lus10038143 [exp] 181 / 7e-55 AT3G14750 275 / 1e-91 unknown protein Lus10013698 [exp] 180 / 2e-54 AT3G14750 298 / 3e-100 unknown protein Lus10005563 [exp] 174 / 3e-52 AT3G14750 288 / 2e-96 unknown protein Lus10035371 [exp] 127 / 6e-35 AT1G67170 284 / 2e-95 unknown protein Lus10030976 [exp] 129 / 5e-34 AT1G67170 294 / 1e-96 unknown protein Lus10037647 [exp] 121 / 3e-32 AT1G55170 233 / 6e-76 unknown protein Lus10015629 [exp] 118 / 3e-31 AT1G55170 236 / 2e-77 unknown protein Lus10015628 [exp] 108 / 9e-28 AT1G55170 211 / 3e-68 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.009G076700.2 pacid=42771116 polypeptide=Potri.009G076750.1.p locus=Potri.009G076700 ID=Potri.009G076700.2.v4.1 annot-version=v4.1 ATGGACTGTTTCAAATCCGATCGTGTTTCGATCATCGATTTCAAGTCTTTAAAGACCAGAACTGATTCGAGAATTCGCAGCGTTTCGACGCAACCATCTC CAACTCCGCGAAATCCCTTTATCCCGAGTCGCCCCCCTTCCTCGCTCAACCACCGACCCACGCCACCTCCGCACCCGACCTCACCACACCTCCTCGAAGA CCGAATATCAACCCAACACCGTGAGATCCAATCCCTACTTTTAGACAACCAACGACACGCTGCCACACACGTTGCATTAAAACAAGAAGTCTCTCTGTCA CAACAAGACCTTCGTCACTTGTCAACACTTGCTGCTGATGTTAAAGCCGAGAGAGATAATCAAATCCGTGAATTCTATCAAAGATCGTTGAAATTGGACG CCGAGTTACGGTCTATTGATGCTATGAGTGCCGAACTTGTTCGGGTAAGAACGGATGTACAGAAACTTACTGTGCAACGGCAGGATATGACTGCACAATT GAAGGAGATGAATAGTGAAATTGTTAAGGCTAAAACGGAAACGCAGCAGGTGGGTGTTATTAAAGAGGAGATTGAAACTGTACAGCAAGAGATTCAAAGA GGAAGGTCTGCTATTGAATATGAGAAGAAAACACGGGCATTTAATCTTGAGCAAGAAAAGGTGTTGGAGAAAAATAGGATTCTTTTGGTTCGAGAAATTG AGAAACTTCGCACTGAGTTGGCCAATTCAGAGAAAAGAGCAAGGGCGGCAGCCGCGGCAGGGAACCCAAGTCCTGGATACGGTAGAAACTATGGCAGCGC TGAAGTGAGATATGGAGGAAGTTCATATCCTGATCCTATTGGCCTGCAGCAGGTTCAGATTGGTGGTAGTGATTCTGTTCCTACATTTTCATCTGGAGCA ATGTCTAATGGCCACCATGACACTGCACATAGATGA
AA sequence Show only first row Show all	>Potri.009G076700.2 pacid=42771116 polypeptide=Potri.009G076750.1.p locus=Potri.009G076700 ID=Potri.009G076700.2.v4.1 annot-version=v4.1 MDCFKSDRVSIIDFKSLKTRTDSRIRSVSTQPSPTPRNPFIPSRPPSSLNHRPTPPPHPTSPHLLEDRISTQHREIQSLLLDNQRHAATHVALKQEVSLS QQDLRHLSTLAADVKAERDNQIREFYQRSLKLDAELRSIDAMSAELVRVRTDVQKLTVQRQDMTAQLKEMNSEIVKAKTETQQVGVIKEEIETVQQEIQR GRSAIEYEKKTRAFNLEQEKVLEKNRILLVREIEKLRTELANSEKRARAAAAAGNPSPGYGRNYGSAEVRYGGSSYPDPIGLQQVQIGGSDSVPTFSSGA MSNGHHDTAHR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G14750			unknown protein		Potri.009G076700 [exp]	0	1
AT1G70620			cyclin-related (.1.2.3)		Potri.010G046000 [exp]	5.74	0.8449
AT1G72300			Leucine-rich receptor-like pro...		Potri.001G161000 [exp]	6.92	0.8230
AT1G18950			DDT domain superfamily (.1)		Potri.015G067300 [exp]	7.07	0.8012
AT1G28260			Telomerase activating protein ...		Potri.011G053800 [exp]	8.30	0.7827
AT5G11700			unknown protein		Potri.006G234500 [exp]	9.74	0.8204
AT3G09850			D111/G-patch domain-containing...		Potri.006G189501 [exp]	12.24	0.8126
AT3G50670		U1SNRNP, U1-70K	U1 small nuclear ribonucleopro...		Potri.005G124300 [exp]	12.32	0.7883
					Potri.009G112922 [exp]	15.23	0.8107
					Potri.006G242350 [exp]	17.49	0.7892
AT3G24870			Helicase/SANT-associated, DNA ...		Potri.014G189900 [exp]	19.44	0.8120

Compare expression of checked genes

Potri.009G076700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.