Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G30140 477 / 1e-166 UDP-Glycosyltransferase superfamily protein (.1.2) AT2G30150 452 / 7e-157 UDP-Glycosyltransferase superfamily protein (.1) AT2G36970 228 / 3e-69 UDP-Glycosyltransferase superfamily protein (.1) AT1G78270 209 / 5e-62 ATUGT85A4 UDP-glucosyl transferase 85A4 (.1) AT1G22360 208 / 1e-61 ATUGT85A2, AT2 UDP-glucosyl transferase 85A2 (.1.2) AT2G28080 207 / 3e-61 UDP-Glycosyltransferase superfamily protein (.1) AT1G22400 202 / 1e-59 ATUGT85A1, UGT85A1 ARABIDOPSIS THALIANA UDP-GLUCOSYL TRANSFERASE 85A1, UDP-Glycosyltransferase superfamily protein (.1) AT1G05675 199 / 1e-58 UDP-Glycosyltransferase superfamily protein (.1) AT2G31750 196 / 2e-57 UGT74D1 UDP-glucosyl transferase 74D1 (.1) AT1G22380 194 / 3e-56 ATUGT85A3 UDP-glucosyl transferase 85A3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G282100 [exp] 596 / 0 AT2G30140 475 / 5e-166 UDP-Glycosyltransferase superfamily protein (.1.2) Potri.001G281900 [exp] 559 / 0 AT2G30140 478 / 6e-167 UDP-Glycosyltransferase superfamily protein (.1.2) Potri.001G281800 [exp] 548 / 0 AT2G30150 467 / 5e-163 UDP-Glycosyltransferase superfamily protein (.1) Potri.009G077500 [exp] 521 / 0 AT2G30140 450 / 5e-156 UDP-Glycosyltransferase superfamily protein (.1.2) Potri.009G077400 [exp] 516 / 0 AT2G30150 464 / 6e-162 UDP-Glycosyltransferase superfamily protein (.1) Potri.009G008100 [exp] 224 / 7e-68 AT2G28080 622 / 0.0 UDP-Glycosyltransferase superfamily protein (.1) Potri.017G032300 [exp] 214 / 4e-64 AT1G05675 465 / 6e-162 UDP-Glycosyltransferase superfamily protein (.1) Potri.004G214100 [exp] 213 / 2e-63 AT2G28080 545 / 0.0 UDP-Glycosyltransferase superfamily protein (.1) Potri.004G179300 [exp] 212 / 2e-63 AT1G05680 446 / 1e-154 Uridine diphosphate glycosyltransferase 74E2 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042260 [exp] 543 / 0 AT2G30140 410 / 3e-139 UDP-Glycosyltransferase superfamily protein (.1.2) Lus10026394 [exp] 497 / 2e-174 AT2G30140 425 / 3e-146 UDP-Glycosyltransferase superfamily protein (.1.2) Lus10042261 [exp] 470 / 1e-163 AT2G30140 472 / 1e-164 UDP-Glycosyltransferase superfamily protein (.1.2) Lus10042262 [exp] 365 / 4e-123 AT2G30150 375 / 2e-127 UDP-Glycosyltransferase superfamily protein (.1) Lus10026393 [exp] 295 / 3e-98 AT2G30140 238 / 4e-76 UDP-Glycosyltransferase superfamily protein (.1.2) Lus10042259 [exp] 219 / 2e-68 AT2G30140 166 / 9e-49 UDP-Glycosyltransferase superfamily protein (.1.2) Lus10021437 [exp] 211 / 2e-62 AT2G36970 530 / 0.0 UDP-Glycosyltransferase superfamily protein (.1) Lus10021438 [exp] 209 / 5e-62 AT2G36970 534 / 0.0 UDP-Glycosyltransferase superfamily protein (.1) Lus10024584 [exp] 207 / 2e-61 AT1G22400 570 / 0.0 ARABIDOPSIS THALIANA UDP-GLUCOSYL TRANSFERASE 85A1, UDP-Glycosyltransferase superfamily protein (.1) Lus10032218 [exp] 207 / 3e-61 AT1G22380 564 / 0.0 UDP-glucosyl transferase 85A3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0113 [poplar] [flax] GT-B PF00201 [poplar] [flax] UDPGT UDP-glucoronosyl and UDP-glucosyl transferase
Representative CDS sequence Show only first row Show all	>Potri.009G077200.2 pacid=42772902 polypeptide=Potri.009G077200.2.p locus=Potri.009G077200 ID=Potri.009G077200.2.v4.1 annot-version=v4.1 ATGGACTCTAACATGGACGCCGTTGACCAGCGATCAACAACCAACTGCCATGTGTTAGCAGTGCCCTATCCTGGCAGAGGCCATGTCAACCCCATGATGA ATCTCTGCAAGTTACTATCTTCAAAGAAACATGATATTCTCTTCACTTTTGTTGTTACTGAAGAGTGGCTTGGATTCATTGGCTCTGATACTAAACCCAG CAACATTAGATTTGCCTCGATACCAAATGTCATCCCTTCTGAACTAGTCCGAGGAGCTGATTTTCCTGGATTCTATGAGGCTGTGATGACAAAGATGGAA GGTCCATTTGAACGGCTACTTGATCAGCTTGACCCGCCAGTGACTACTATCATAGCCGATGCTGAGTTACTATGGGCAATCACCATTGCAAACAAGAGAA ATATTCCAGTGGCCACTCTTTGCACTTTGTCAGCAACCGTATTTTCAATATTGTATCATTTTGCTCACATAAAAGACCTGCAAAAGCTAGCCAATTTGTT AGATGATGGAGAAGAGATTGTGGACAGCATTCAAGGAATTTCTTCAAAGCATGTATTAGACCTTCGAACAATCTTCAATGGAGGCGAGGTACGAGTTATG CAGCTTACTTTGGAAAGCATTTCATGGGTGCCAAGAGCACAATATCTTCTAATCAACTCCGTCTACGAGCTTGAATCCCAAGCCCTCGACGCACTAAAAG CAAAAGTACATTTACCAATCTATCCAGTTGGTCCTTCCATACCTTACTTTGAACTTAAGGACAACTATTGTGTCACCGCAGGTTCTGATAGCACCAACTA TTTCCAATGGCTGGATTCCCAACCTACAGGCTCTGTTTTGTATGTATCATTAGGAAGTTTCTTTTCAATTTCCAGCAAGCAAATGGATGAAATTGCTTCT GGGTTGAGAAATAGTGGTGTTAGATATTTGTGGGTGGCTCGTGGAGAAGCTTTACGGCTAAAAGAGAGTTGTGGTGAAAAGGGGATAGTGGTCCCATGGT GTGACCAGTTGCAGGTCTTGTGTCATTCTTCTGTAGGGGGATTTTGGACACATTGTGGGTGGAATTCGAGTCTTGAAGCTGTTTTTGCAGGGATTCCAAT GCTTTCTCTCCCTTTATTTTTCGATCAGGTTCCCAATAGTAAGCAGATTGTTGAAAACTGGAGAATTGGGTGGCAAATGAAGAAAGATGAGGGGACTAAA ATTTTGGTTAAAGGAGAGGAAATTGCAGCGCTTGTGCAAAGGTTTATGGATACGGAGAACAGTGAGGGGAAGGATATGAGAAGAAGAGCGAAAATGCTTC AGCAACTGTGCGGGCAAGCAATAGCAAAAGACGGATCTTCTGATAAAAACCTTGATGCTTTTATCAGAGATATTTCATAA
AA sequence Show only first row Show all	>Potri.009G077200.2 pacid=42772902 polypeptide=Potri.009G077200.2.p locus=Potri.009G077200 ID=Potri.009G077200.2.v4.1 annot-version=v4.1 MDSNMDAVDQRSTTNCHVLAVPYPGRGHVNPMMNLCKLLSSKKHDILFTFVVTEEWLGFIGSDTKPSNIRFASIPNVIPSELVRGADFPGFYEAVMTKME GPFERLLDQLDPPVTTIIADAELLWAITIANKRNIPVATLCTLSATVFSILYHFAHIKDLQKLANLLDDGEEIVDSIQGISSKHVLDLRTIFNGGEVRVM QLTLESISWVPRAQYLLINSVYELESQALDALKAKVHLPIYPVGPSIPYFELKDNYCVTAGSDSTNYFQWLDSQPTGSVLYVSLGSFFSISSKQMDEIAS GLRNSGVRYLWVARGEALRLKESCGEKGIVVPWCDQLQVLCHSSVGGFWTHCGWNSSLEAVFAGIPMLSLPLFFDQVPNSKQIVENWRIGWQMKKDEGTK ILVKGEEIAALVQRFMDTENSEGKDMRRRAKMLQQLCGQAIAKDGSSDKNLDAFIRDIS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G30140			UDP-Glycosyltransferase superf...		Potri.009G077200 [exp]	0	1
AT5G43290	WRKY	ATWRKY49, WRKY4...	ARABIDOPSIS THALIANA WRKY DNA-...		Potri.006G087000 [exp]	1.41	0.9297
AT3G17650		YSL5, PDE321	pigment defective 321, YELLOW ...		Potri.004G069300 [exp]	3.46	0.8851
AT1G67400			ELMO/CED-12 family protein (.1...		Potri.010G060700 [exp]	5.19	0.8345
AT3G49950	GRAS		GRAS family transcription fact...		Potri.007G053500 [exp]	7.21	0.9071
AT5G21482		ATCKX5, CKX7	ARABIDOPSIS THALIANA CYTOKININ...		Potri.006G221000 [exp]	8.71	0.7976
AT5G04820	OFP	ATOFP13, OFP13	ARABIDOPSIS THALIANA OVATE FAM...		Potri.008G017500 [exp]	13.26	0.8405
AT2G38110		ATGPAT6, GPAT6	glycerol-3-phosphate acyltrans...		Potri.006G097800 [exp]	14.07	0.8481
AT5G66450			Phosphatidic acid phosphatase ...		Potri.005G120400 [exp]	14.42	0.8261
AT5G59790			Domain of unknown function (DU...		Potri.008G051000 [exp]	16.49	0.7415
AT1G01120		KCS1	3-ketoacyl-CoA synthase 1 (.1)		Potri.002G178000 [exp]	18.97	0.8320	Pt-KCS1.1

Compare expression of checked genes

Potri.009G077200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.