Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G30150 463 / 1e-161 UDP-Glycosyltransferase superfamily protein (.1) AT2G30140 457 / 1e-158 UDP-Glycosyltransferase superfamily protein (.1.2) AT1G78270 210 / 2e-62 ATUGT85A4 UDP-glucosyl transferase 85A4 (.1) AT2G28080 209 / 4e-62 UDP-Glycosyltransferase superfamily protein (.1) AT2G36970 207 / 3e-61 UDP-Glycosyltransferase superfamily protein (.1) AT1G22400 203 / 7e-60 ATUGT85A1, UGT85A1 ARABIDOPSIS THALIANA UDP-GLUCOSYL TRANSFERASE 85A1, UDP-Glycosyltransferase superfamily protein (.1) AT1G05675 199 / 1e-58 UDP-Glycosyltransferase superfamily protein (.1) AT1G22360 198 / 6e-58 ATUGT85A2, AT2 UDP-glucosyl transferase 85A2 (.1.2) AT1G22380 192 / 8e-56 ATUGT85A3 UDP-glucosyl transferase 85A3 (.1) AT1G05680 188 / 2e-54 UGT74E2 Uridine diphosphate glycosyltransferase 74E2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G077500 [exp] 543 / 0 AT2G30140 450 / 5e-156 UDP-Glycosyltransferase superfamily protein (.1.2) Potri.001G281800 [exp] 525 / 0 AT2G30150 467 / 5e-163 UDP-Glycosyltransferase superfamily protein (.1) Potri.001G282100 [exp] 518 / 0 AT2G30140 475 / 5e-166 UDP-Glycosyltransferase superfamily protein (.1.2) Potri.001G281900 [exp] 518 / 0 AT2G30140 478 / 6e-167 UDP-Glycosyltransferase superfamily protein (.1.2) Potri.009G077200 [exp] 515 / 0 AT2G30140 478 / 6e-167 UDP-Glycosyltransferase superfamily protein (.1.2) Potri.009G008100 [exp] 200 / 2e-58 AT2G28080 622 / 0.0 UDP-Glycosyltransferase superfamily protein (.1) Potri.004G214100 [exp] 197 / 1e-57 AT2G28080 545 / 0.0 UDP-Glycosyltransferase superfamily protein (.1) Potri.006G023600 [exp] 194 / 2e-56 AT1G22380 526 / 0.0 UDP-glucosyl transferase 85A3 (.1) Potri.005G073766 [exp] 194 / 3e-56 AT1G22400 562 / 0.0 ARABIDOPSIS THALIANA UDP-GLUCOSYL TRANSFERASE 85A1, UDP-Glycosyltransferase superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026394 [exp] 424 / 9e-146 AT2G30140 425 / 3e-146 UDP-Glycosyltransferase superfamily protein (.1.2) Lus10042261 [exp] 424 / 2e-145 AT2G30140 472 / 1e-164 UDP-Glycosyltransferase superfamily protein (.1.2) Lus10042260 [exp] 403 / 1e-136 AT2G30140 410 / 3e-139 UDP-Glycosyltransferase superfamily protein (.1.2) Lus10042262 [exp] 325 / 2e-107 AT2G30150 375 / 2e-127 UDP-Glycosyltransferase superfamily protein (.1) Lus10026393 [exp] 229 / 2e-72 AT2G30140 238 / 4e-76 UDP-Glycosyltransferase superfamily protein (.1.2) Lus10016128 [exp] 203 / 1e-59 AT2G36970 558 / 0.0 UDP-Glycosyltransferase superfamily protein (.1) Lus10021437 [exp] 202 / 2e-59 AT2G36970 530 / 0.0 UDP-Glycosyltransferase superfamily protein (.1) Lus10021438 [exp] 200 / 2e-58 AT2G36970 534 / 0.0 UDP-Glycosyltransferase superfamily protein (.1) Lus10013925 [exp] 196 / 6e-57 AT1G22380 560 / 0.0 UDP-glucosyl transferase 85A3 (.1) Lus10010712 [exp] 192 / 1e-55 AT1G24100 462 / 1e-160 UDP-glucosyl transferase 74B1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0113 [poplar] [flax] GT-B PF00201 [poplar] [flax] UDPGT UDP-glucoronosyl and UDP-glucosyl transferase
Representative CDS sequence Show only first row Show all	>Potri.009G077400.1 pacid=42771407 polypeptide=Potri.009G077400.1.p locus=Potri.009G077400 ID=Potri.009G077400.1.v4.1 annot-version=v4.1 ATGGGATACATTTACAGGGAAGCAGCCGCCGGGTGTCACGTGGTGGCGATGCCCTATCCAGGTCGAGGCCAAATCAATCCCATGATGGAACTATGCAAGT CACTTGTTAGAAGAAAAGATGACATCCGTGTTACTTTTGTAGTCACTGAAGAGTGGCTAAGTTTCATCGGTTCTGATCCTAAGCCTGATCAAATAAGCTT CAGCACTATTCCCAATGTTGTCCCGTCTGAGCTAGTTCGCGCTAGCAACATGCTAGAGTTCTTTGAAGCGCTCATGACAAACATGGAAGCTCCGTTTGAG CGATTTTTGGATCATCTTGTGCAGCCGCCGGCTGTCATAATAGCTGATACATATCTGCTCTGGGCTGTCAGGGTCGGGAATCGGAAGAATATTCCAGTGG CCTCATTTTGGCCTATGTCTGTTAATGTGTTTTTAATGTTTCATTATTTGGATCTTCTCAGGGAAAATGGACAATTCCTAGTGGATTTGTTAGAGAGAGG GTATGAACGTGCGGACTACATTCCAGGAGTTTCTTCAACAAGTCTGGTGGATTTCCCTTCCTTCATTAATGGGAGCAACCCATACATGTTGGGTCGGATT GTGGAGGTATTCTCATGGGTGCCTAAAGCACAATATCTTTTATTCCCTTCCATCTATGAGCTCGAACCCCAGGCCATTGATGCTATAAAAGCAGGATTCT CCTTTCCTGTCTATACTGTTGGTCCTTCAATACCGTACTCGAAACTTGAAGATGGATCTCATACGATTACTGCACATGGTGACATTGACTACTTGAGATG GTTAGATGACCAACCTAGTAAATCCGTTCTGTACATTTCCATGGGGAGCTTTCTTTCATTTTCCAGTGCCCAAATGGATGAAATTGCTGGCGGTTTGCAT GATAGTGGTGTTCGATACTTATGGGTGGCTCGTGGAGAAACTTCTAGGTTGAAAGAGGTTTGCGGTGATAAGGGATTAGTAGTGCCCTGGTGTGACCAGC TGAGGGTGTTGTGCCATCCATCTGTAGGAGGATTTTGGACGCATTGTGGGTGGAATTCTGTTCGAGAAGGTGTTTTTGCAGGTGTTCCTTTCCTCACTTA CCTAATTTCTGCAGATCAACGCCCAAACAGCAAGTTAATCGTGGAGGACTGGAAGGTTGGCTGGAGAGTGGAGAAAGAGTATAGGGTTGAAAATCTTGTG AGAAGGGAGGAAATTGGAGGACTTGTGCGGGATTTTATGGATTTGGATAGCAATGAAGGAAAAGAGATGAGGAGGAGAGTGAAAGGATTTCAGGAGATAT GCCAACAAGCAGTGGCGGAGCCACGTGGGTGCAAAAGGGGACAATTGCCCCTTCATTTTTTTTTAAAGTATTTTCTATATTAG
AA sequence Show only first row Show all	>Potri.009G077400.1 pacid=42771407 polypeptide=Potri.009G077400.1.p locus=Potri.009G077400 ID=Potri.009G077400.1.v4.1 annot-version=v4.1 MGYIYREAAAGCHVVAMPYPGRGQINPMMELCKSLVRRKDDIRVTFVVTEEWLSFIGSDPKPDQISFSTIPNVVPSELVRASNMLEFFEALMTNMEAPFE RFLDHLVQPPAVIIADTYLLWAVRVGNRKNIPVASFWPMSVNVFLMFHYLDLLRENGQFLVDLLERGYERADYIPGVSSTSLVDFPSFINGSNPYMLGRI VEVFSWVPKAQYLLFPSIYELEPQAIDAIKAGFSFPVYTVGPSIPYSKLEDGSHTITAHGDIDYLRWLDDQPSKSVLYISMGSFLSFSSAQMDEIAGGLH DSGVRYLWVARGETSRLKEVCGDKGLVVPWCDQLRVLCHPSVGGFWTHCGWNSVREGVFAGVPFLTYLISADQRPNSKLIVEDWKVGWRVEKEYRVENLV RREEIGGLVRDFMDLDSNEGKEMRRRVKGFQEICQQAVAEPRGCKRGQLPLHFFLKYFLY

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G30150			UDP-Glycosyltransferase superf...		Potri.009G077400 [exp]	0	1
AT5G15150	HD	ATHB3, HAT7, AT...	HOMEOBOX FROM ARABIDOPSIS THAL...		Potri.008G194400 [exp]	3.16	0.8205
AT1G47580			Pentatricopeptide repeat (PPR)...		Potri.002G130900 [exp]	8.00	0.8338
AT2G27040		OCP11, AGO4	OVEREXPRESSOR OF CATIONIC PERO...		Potri.008G010500 [exp]	11.48	0.7948	AGO912
AT5G05800			unknown protein		Potri.001G195601 [exp]	14.38	0.8293
AT4G39110			Malectin/receptor-like protein...		Potri.009G120400 [exp]	17.54	0.7883
AT3G11310			unknown protein		Potri.001G182200 [exp]	19.79	0.8272
					Potri.017G047000 [exp]	21.00	0.8014
					Potri.017G065250 [exp]	23.66	0.7825
					Potri.017G046400 [exp]	29.24	0.7765
AT5G60230		ATSEN2, SEN2	splicing endonuclease 2 (.1.2)		Potri.014G083401 [exp]	32.72	0.7065

Compare expression of checked genes

Potri.009G077400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.