Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G30140 450 / 6e-156 UDP-Glycosyltransferase superfamily protein (.1.2) AT2G30150 444 / 1e-153 UDP-Glycosyltransferase superfamily protein (.1) AT2G28080 215 / 2e-64 UDP-Glycosyltransferase superfamily protein (.1) AT2G36970 215 / 3e-64 UDP-Glycosyltransferase superfamily protein (.1) AT1G05675 207 / 2e-61 UDP-Glycosyltransferase superfamily protein (.1) AT1G05680 204 / 1e-60 UGT74E2 Uridine diphosphate glycosyltransferase 74E2 (.1) AT2G31750 197 / 1e-57 UGT74D1 UDP-glucosyl transferase 74D1 (.1) AT1G78270 192 / 2e-55 ATUGT85A4 UDP-glucosyl transferase 85A4 (.1) AT1G22400 190 / 6e-55 ATUGT85A1, UGT85A1 ARABIDOPSIS THALIANA UDP-GLUCOSYL TRANSFERASE 85A1, UDP-Glycosyltransferase superfamily protein (.1) AT1G22380 188 / 6e-54 ATUGT85A3 UDP-glucosyl transferase 85A3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G077400 [exp] 543 / 0 AT2G30150 464 / 6e-162 UDP-Glycosyltransferase superfamily protein (.1) Potri.001G281900 [exp] 530 / 0 AT2G30140 478 / 6e-167 UDP-Glycosyltransferase superfamily protein (.1.2) Potri.009G077200 [exp] 521 / 0 AT2G30140 478 / 6e-167 UDP-Glycosyltransferase superfamily protein (.1.2) Potri.001G281800 [exp] 518 / 0 AT2G30150 467 / 5e-163 UDP-Glycosyltransferase superfamily protein (.1) Potri.001G282100 [exp] 510 / 1e-179 AT2G30140 475 / 5e-166 UDP-Glycosyltransferase superfamily protein (.1.2) Potri.009G008100 [exp] 211 / 7e-63 AT2G28080 622 / 0.0 UDP-Glycosyltransferase superfamily protein (.1) Potri.015G071900 [exp] 206 / 3e-61 AT1G24100 427 / 5e-147 UDP-glucosyl transferase 74B1 (.1) Potri.004G179300 [exp] 205 / 7e-61 AT1G05680 446 / 1e-154 Uridine diphosphate glycosyltransferase 74E2 (.1) Potri.006G022300 [exp] 206 / 8e-61 AT1G22360 518 / 0.0 UDP-glucosyl transferase 85A2 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042261 [exp] 434 / 2e-149 AT2G30140 472 / 1e-164 UDP-Glycosyltransferase superfamily protein (.1.2) Lus10042260 [exp] 434 / 2e-148 AT2G30140 410 / 3e-139 UDP-Glycosyltransferase superfamily protein (.1.2) Lus10026394 [exp] 429 / 9e-148 AT2G30140 425 / 3e-146 UDP-Glycosyltransferase superfamily protein (.1.2) Lus10042262 [exp] 359 / 9e-121 AT2G30150 375 / 2e-127 UDP-Glycosyltransferase superfamily protein (.1) Lus10026393 [exp] 246 / 4e-79 AT2G30140 238 / 4e-76 UDP-Glycosyltransferase superfamily protein (.1.2) Lus10021438 [exp] 216 / 1e-64 AT2G36970 534 / 0.0 UDP-Glycosyltransferase superfamily protein (.1) Lus10010712 [exp] 214 / 4e-64 AT1G24100 462 / 1e-160 UDP-glucosyl transferase 74B1 (.1) Lus10016128 [exp] 211 / 2e-62 AT2G36970 558 / 0.0 UDP-Glycosyltransferase superfamily protein (.1) Lus10021437 [exp] 204 / 4e-60 AT2G36970 530 / 0.0 UDP-Glycosyltransferase superfamily protein (.1) Lus10016126 [exp] 202 / 2e-59 AT2G28080 551 / 0.0 UDP-Glycosyltransferase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0113 [poplar] [flax] GT-B PF00201 [poplar] [flax] UDPGT UDP-glucoronosyl and UDP-glucosyl transferase
Representative CDS sequence Show only first row Show all	>Potri.009G077500.1 pacid=42770973 polypeptide=Potri.009G077500.1.p locus=Potri.009G077500 ID=Potri.009G077500.1.v4.1 annot-version=v4.1 ATGGATGCTGTTACCGTTAAACCAACCTATAGCTGCCACGTAGTGGCCATACCTTATCCAGGTCGAGGCCACGTAAACCCCTTGATGAACTTCTGCAACA TACTTGCATCAAAAAAACCAGACACTCTGATAACCTTTGTAGTCACTGAAGAATGGCTTGGCTTCATTAGCTCCAGTTCTAACAGCAGCCCCAGTAACCT CCAATTTGGTTCCATACCCAACGTTATTCCATCAGAGCTGGTCCGCAACGCTGATCCAATTGGGTTCATTGAAGCTGTCTTCACTAAGATGGAGACTCCA TTTGAGGAGCTTCTTGATAGTTTTCATCAGCCTTTGAGGCCTACTCTTATAGTGACCGATGCTTTCCTGTTTTGGGCGATTGGTGTCGGGAATCGAAGGA ATATTCCGGTGGCTTCATTTTTTCCTATGTCTTCGACAGTGTTTTCTGTGTTTTATCATCTTGATCTTCTTGCACAACATGGACACTTCCCCGTGGACTT GTCAGAAAAGGGTAATGAAATAGTGGATTACATCCCCGGAGTTTCTCCATTACGTCTACTGGATCTCCCATCCTTCATATTTGCAAGCAACCAATATACA CTTCACCGAATCTTGGACCTTATTTCGTGGATTCCTAAAGCACGGTACCTCTTATTTCCGTCAATTTATGAGCTTGAATCTCAAGTTATAAAGGCTTTAA AATATAAAATTTCAATTCCCGTTTATACCATTGGTCCTGCCATACCTGACTTGAAACTTAGAGACAATTCTTTTTCAAGTAGCAATAACAATGAACTCAA CATTCTACAATGGCTAGATTGCCAACCTGAAAGTTCAGTTCTGTATGTGTCTTTGGGAAGCCATGTTGCAGTTTCAAGTGCACAAATGGATGAGATTGCA GCTGGTTTGTGTGATAGTGGTGTCCGATTCTTGTGGGTGGCACGCGATAAAACTTCTAGGTTGAGACAGGTTTGTGGTGATATGGGGTTGGTAGAAACAT GGTGTGACCAGTTGAAAGTGTTGTGCCATTCTTCTGTGGGGGGGTTTTGGACACATTGCGGGTGGAATTCTGTTAAAGAAGGTATTTTTGCTGGTGTGCC TTTTCTTACCTTCCCTATAGTTGCTGACCAACTGACTCATAGTAAGGTAATTGTGGAGGATTGGAAGATAGGTTGGAGAATGAAGAAAGAGGTGGTAGCC AAAACTTTGGTGGCAAGAGAGGAAATTGCAGGGCTTGTGCAGAAATTTATGGATTTAGAAAGAGCTGAAGTCAAAGAAATGAGGAGAAGATCAAGAGAGC TTCAACAAGTATGTGAACATGCAATTGCTGAAGGTGGAACTTCTGAGATTGACATTAATGCCTTCATCCGGGACATATCAGAATGA
AA sequence Show only first row Show all	>Potri.009G077500.1 pacid=42770973 polypeptide=Potri.009G077500.1.p locus=Potri.009G077500 ID=Potri.009G077500.1.v4.1 annot-version=v4.1 MDAVTVKPTYSCHVVAIPYPGRGHVNPLMNFCNILASKKPDTLITFVVTEEWLGFISSSSNSSPSNLQFGSIPNVIPSELVRNADPIGFIEAVFTKMETP FEELLDSFHQPLRPTLIVTDAFLFWAIGVGNRRNIPVASFFPMSSTVFSVFYHLDLLAQHGHFPVDLSEKGNEIVDYIPGVSPLRLLDLPSFIFASNQYT LHRILDLISWIPKARYLLFPSIYELESQVIKALKYKISIPVYTIGPAIPDLKLRDNSFSSSNNNELNILQWLDCQPESSVLYVSLGSHVAVSSAQMDEIA AGLCDSGVRFLWVARDKTSRLRQVCGDMGLVETWCDQLKVLCHSSVGGFWTHCGWNSVKEGIFAGVPFLTFPIVADQLTHSKVIVEDWKIGWRMKKEVVA KTLVAREEIAGLVQKFMDLERAEVKEMRRRSRELQQVCEHAIAEGGTSEIDINAFIRDISE

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G30140			UDP-Glycosyltransferase superf...		Potri.009G077500 [exp]	0	1
AT2G47300			ribonuclease Ps (.2.3)		Potri.002G194100 [exp]	2.00	0.8628
AT2G19490			recA DNA recombination family ...		Potri.006G148700 [exp]	3.87	0.8107
AT5G51140			Pseudouridine synthase family ...		Potri.015G101300 [exp]	9.53	0.8019
AT4G29510		ATPRMT1B, ATPRM...	PROTEIN ARGININE METHYLTRANSFE...		Potri.018G067200 [exp]	10.58	0.7992	PRMT901
AT5G45600		TAF14b, GAS41	TBP-ASSOCIATED FACTOR 14B, GLI...		Potri.009G126200 [exp]	10.95	0.7891	Pt-GAS41.2
AT5G04130		GYRB2	DNA GYRASE B2 (.1.2)		Potri.006G039400 [exp]	11.31	0.7924
AT4G24500			hydroxyproline-rich glycoprote...		Potri.002G111500 [exp]	11.40	0.8031
AT5G45110		ATNPR3, NPR3	NPR1-like protein 3 (.1)		Potri.012G118500 [exp]	11.48	0.7902
AT5G01500		TAAC	thylakoid ATP/ADP carrier (.1)		Potri.006G099800 [exp]	12.64	0.7918
AT5G54390		ATAHL, AHL	HAL2-like (.1)		Potri.011G044900 [exp]	16.43	0.7582

Compare expression of checked genes

Potri.009G077500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.