Plant FIBer expression Database

Potri.009G077800 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G30200 564 / 0 EMB3147 EMBRYO DEFECTIVE 3147, catalytics;transferases;[acyl-carrier-protein] S-malonyltransferases;binding (.1), catalytics;transferases;[acyl-carrier-protein] S-malonyltransferases;binding (.2)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.001G282600
[exp]
544 / 0 AT2G30200 415 / 1e-145 EMBRYO DEFECTIVE 3147, catalytics;transferases;[acyl-carrier-protein] S-malonyltransferases;binding (.1), catalytics;transferases;[acyl-carrier-protein] S-malonyltransferases;binding (.2)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10026397
[exp]
617 / 0 AT2G30200 598 / 0.0 EMBRYO DEFECTIVE 3147, catalytics;transferases;[acyl-carrier-protein] S-malonyltransferases;binding (.1), catalytics;transferases;[acyl-carrier-protein] S-malonyltransferases;binding (.2)
Lus10042255
[exp]
610 / 0 AT2G30200 595 / 0.0 EMBRYO DEFECTIVE 3147, catalytics;transferases;[acyl-carrier-protein] S-malonyltransferases;binding (.1), catalytics;transferases;[acyl-carrier-protein] S-malonyltransferases;binding (.2)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0323 Patatin PF00698 Acyl_transf_1 Acyl transferase domain
Representative CDS sequence
>Potri.009G077800.2 pacid=42771874 polypeptide=Potri.009G077800.2.p locus=Potri.009G077800 ID=Potri.009G077800.2.v4.1 annot-version=v4.1
ATGCCAGTATCCTTCACTACCACCACCAACCTCCCTCTTATCCTACGCACACTTCCTTCTTCAACCATGGCTTCTTCTTCTCTCGCTATCCCTTCCGTTT
CTCTCAAAACCCTCTCTTTCACTTCCTCTGATGCTTTTAACAAAGGAATTCGAGGATTTGCTCTTAAAAATGGGAACCCATCAATGGTTTTCATGAGCTT
GTCAGTTGGATCACAAACTCAAACTGTTGTTGTTGATGATACTTTGTTTCTCGATTATAAGCCTACCTCAGCCTTTTTGTTTCCTGGTCAGGGTGCACAA
GCTGTTGGGATGGGAAAGGAGGCTCATAGTGTGTCAGCTGCTTCCGAGTTGTACAAAAAAGCCAACGATATATTGGGGTATGATCTTCTTGAACTCTGCA
TCGGTGGTCCAAAAGAGAAGCTGGATTCGACTGTTATAAGCCAGCCTGCTATTTATGTCACAAGTCTAGCTGCAGTTGAGGTGCTCCGAGCTCGTGATGG
AGGCCAGCAGATAATTGACTCTGTTGATGTCACATGTGGTCTCAGCTTGGGAGAATATACTGCGCTCGCATTTGCTGGAGCCTTCAGCTTCGAAGATGGA
CTGAAGCTGGTCAAACTAAGGGGTGAAGCCATGCAGGAAGCTGCCGATGCTGCTAAAGGTGCGATGGTCAGTGTTATAGGACTGGACTCTGACAAAGTTC
AACAGTTGTGTGATGCAGCCAATCAAGAAGTTGATGAAGCTGATAGAGTTCAGATTGCAAATTACCTATGTCCTGGTAATTATGCGGTATCTGGAGGTGT
GAAGGGAGTAGAAGCAGTAGAAGCCAAAGCAAAGTCATTCAAAGCTCGAATGACGGTTCGTTTGGCAGTTGCCGGTGCTTTTCATACAAGTTTCATGGAA
CCAGCTGTCTCAAGATTGGAAGCTGCATTGGCAGCCACTGAAATCAGACAACCAAGAATACCAGTTATATCCAATGTTGATGCACAACCACATGCAGATC
CTGCAACAATTAAGAAGATCTTGGCACGCCAAGTGACTTCTCCTGTTCAATGGGAAACAACAGTGAAGACTCTCTTAACCAAAGGGCTGAAGAAGAGTTA
TGAATTGGGACCTGGAAAGGTTATTGCTGGCATTTTCAAGAGAATGGACAAGAAAGCTGAAATAGAGAATATCAGTGCATGA
AA sequence
>Potri.009G077800.2 pacid=42771874 polypeptide=Potri.009G077800.2.p locus=Potri.009G077800 ID=Potri.009G077800.2.v4.1 annot-version=v4.1
MPVSFTTTTNLPLILRTLPSSTMASSSLAIPSVSLKTLSFTSSDAFNKGIRGFALKNGNPSMVFMSLSVGSQTQTVVVDDTLFLDYKPTSAFLFPGQGAQ
AVGMGKEAHSVSAASELYKKANDILGYDLLELCIGGPKEKLDSTVISQPAIYVTSLAAVEVLRARDGGQQIIDSVDVTCGLSLGEYTALAFAGAFSFEDG
LKLVKLRGEAMQEAADAAKGAMVSVIGLDSDKVQQLCDAANQEVDEADRVQIANYLCPGNYAVSGGVKGVEAVEAKAKSFKARMTVRLAVAGAFHTSFME
PAVSRLEAALAATEIRQPRIPVISNVDAQPHADPATIKKILARQVTSPVQWETTVKTLLTKGLKKSYELGPGKVIAGIFKRMDKKAEIENISA

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT2G30200 EMB3147 EMBRYO DEFECTIVE 3147, catalyt... Potri.009G077800
[exp]
0 1
AT5G13120 Pnsl5, ATCYP20-... Photosynthetic NDH subcomplex... Potri.003G167700
[exp]
1.00 0.8637
AT1G80560 ATIMD2 ARABIDOPSIS ISOPROPYLMALATE DE... Potri.001G185600
[exp]
1.41 0.8461
AT3G56130 biotin/lipoyl attachment domai... Potri.008G074100
[exp]
2.44 0.8411
AT1G26160 Metal-dependent phosphohydrola... Potri.008G111700
[exp]
5.47 0.7010
AT5G46290 KAS1, KAS I, KA... KETOACYL-ACP SYNTHASE 1, 3-ket... Potri.004G131500
[exp]
5.65 0.8249 I.2
AT5G22330 ATTIP49A, RIN1 RESISTANCE TO PSEUDOMONAS SYRI... Potri.009G160600
[exp]
5.74 0.7554
AT2G45440 DHDPS2 dihydrodipicolinate synthase (... Potri.002G149500
[exp]
5.91 0.7841 Pt-DHDPS2.1
AT2G16430 ATPAP10, PAP10 purple acid phosphatase 10 (.1... Potri.004G160100
[exp]
10.95 0.7732 Pt-PAP.2
AT2G32060 Ribosomal protein L7Ae/L30e/S1... Potri.003G181200
[exp]
14.96 0.7519
AT5G60390 GTP binding Elongation factor ... Potri.010G219500
[exp]
16.91 0.7528

Potri.009G077800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.