Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G07010 538 / 0 AtSLP1 Shewenella-like protein phosphatase 1, Calcineurin-like metallo-phosphoesterase superfamily protein (.1.2.3) AT1G18480 195 / 2e-58 AtSLP2 Shewenella-like protein phosphatase 2, Calcineurin-like metallo-phosphoesterase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G127500 [exp] 197 / 3e-59 AT1G18480 538 / 0.0 Shewenella-like protein phosphatase 2, Calcineurin-like metallo-phosphoesterase superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031284 [exp] 515 / 0 AT1G07010 467 / 2e-164 Shewenella-like protein phosphatase 1, Calcineurin-like metallo-phosphoesterase superfamily protein (.1.2.3) Lus10031854 [exp] 319 / 3e-108 AT1G07010 290 / 3e-97 Shewenella-like protein phosphatase 1, Calcineurin-like metallo-phosphoesterase superfamily protein (.1.2.3) Lus10038865 [exp] 167 / 8e-48 AT1G18480 496 / 5e-176 Shewenella-like protein phosphatase 2, Calcineurin-like metallo-phosphoesterase superfamily protein (.1) Lus10014985 [exp] 166 / 4e-47 AT1G18480 492 / 1e-174 Shewenella-like protein phosphatase 2, Calcineurin-like metallo-phosphoesterase superfamily protein (.1) Lus10031853 [exp] 95 / 8e-24 AT1G07010 87 / 7e-22 Shewenella-like protein phosphatase 1, Calcineurin-like metallo-phosphoesterase superfamily protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0163 [poplar] [flax] Calcineurin PF00149 [poplar] [flax] Metallophos Calcineurin-like phosphoesterase
Representative CDS sequence Show only first row Show all	>Potri.009G077900.1 pacid=42771196 polypeptide=Potri.009G077900.1.p locus=Potri.009G077900 ID=Potri.009G077900.1.v4.1 annot-version=v4.1 ATGGCTTCATCATGTCTGAATTCTTTAATTCTACCACCTTGTTCACTTCCTCGTAGAGTAACAGAGACTTGTGCTTCTTTATCTTCTTCTTATCCCGCGT TAAATCCTACTAGCAGCAGCACAGGAGGAGCCTTGAAGCCTATAGTTATCAATGGAGACCCTCCTACTTTTGTCTCTGCTCCTGGTCGCCGTATTGTAGC TGTTGGAGATGTTCATGGAGATCTTGACCAAGCAAGATGTGCGCTTGAGATCGCTGGCGTACTGAGTTCTGATGGTCAAGATTTATGGACTGGTGGAGAA ACCGTATTGATTCAGCTTGGAGATGTACTTGATCGAGGTGAAGAAGAGATAGCAATACTGTCCTTACTACGCTCATTGGATATTCAGGCAAAAGCTCAAG GTGGAGCTGTTTTTCAGGTCAATGGGAATCATGAGACTATGAATGTGGAGGGAGATTTTAGATATGTTGACTCGGGGGCATTTGATGAATGTTCAGATTT CCTGGCCTACTTGGAAGACCACCAGTACAACTGGGAAAATGCTTTTCTTGGCTGGATTGGAGAGTCTAAAAGGCGGAGAGAAGATCGAAAATTGTCTCAG AATCACTGGGGTCCTTGGAATCTGGTGAAGAGGCAAAAGGGGGTAATTGCCAGATCAATCTTGTTGAGACCAGGTGGTCCGTTAGCATGTGAATTGGCGC GGCATGCAGTTGTGCTCAAGATCAATGACTGGGTATTCTGTCATGGTGGCCTCCTTCCTCAACATGTTGCATATGGCGTTGAAAGGATGAACTATGAAGT ATCTCACTGGATGAGAGGTTTAAGTGAGGATGATACTAGTCCTAATTTCCCGTTTATAGCCACAAAGGGTTTTGATTCTGTTGTTTGGAACCGCTTATAC TCAAGAGACATGCTAGGTTTGGAGGGCTATCAGATTAACCGGATACAATCCGTTCTTGAAGAGACGCTGCAATTGCTTGGAGCTAAGGCAATGGTGGTAG GGCATACTCCTCAAACTACAGGCGTAAATTGTAAATACAACTGTAGCATATGGTGCATCGATGTTGGAATGTCCAGTGGAGTTCTAAATTCAAGACCAGA GGTGCTTGAAATAGTAGAGAACAAAGCAAGAGTAATAAGGAGCAAAAGGGACAGATTTAGTGAACTTCAGGCTGTTGATTATACATAA
AA sequence Show only first row Show all	>Potri.009G077900.1 pacid=42771196 polypeptide=Potri.009G077900.1.p locus=Potri.009G077900 ID=Potri.009G077900.1.v4.1 annot-version=v4.1 MASSCLNSLILPPCSLPRRVTETCASLSSSYPALNPTSSSTGGALKPIVINGDPPTFVSAPGRRIVAVGDVHGDLDQARCALEIAGVLSSDGQDLWTGGE TVLIQLGDVLDRGEEEIAILSLLRSLDIQAKAQGGAVFQVNGNHETMNVEGDFRYVDSGAFDECSDFLAYLEDHQYNWENAFLGWIGESKRRREDRKLSQ NHWGPWNLVKRQKGVIARSILLRPGGPLACELARHAVVLKINDWVFCHGGLLPQHVAYGVERMNYEVSHWMRGLSEDDTSPNFPFIATKGFDSVVWNRLY SRDMLGLEGYQINRIQSVLEETLQLLGAKAMVVGHTPQTTGVNCKYNCSIWCIDVGMSSGVLNSRPEVLEIVENKARVIRSKRDRFSELQAVDYT

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G07010		AtSLP1	Shewenella-like protein phosph...		Potri.009G077900 [exp]	0	1
AT1G64500			Glutaredoxin family protein (....		Potri.003G141800 [exp]	1.41	0.9860
AT1G60470		ATGOLS4	galactinol synthase 4 (.1)		Potri.010G042000 [exp]	2.44	0.9710
AT5G24120		ATSIG5, SIG5, S...	SIGMA FACTOR 5, sigma factor E...		Potri.012G031100 [exp]	3.16	0.9789	Pt-SIGE.3
AT4G09350		NdhT, CRRJ	NADH dehydrogenase-like comple...		Potri.013G109000 [exp]	4.47	0.9704
AT4G01070		UGT72B1, GT72B1	UDP-GLUCOSE-DEPENDENT GLUCOSYL...		Potri.002G168600 [exp]	4.69	0.9590
AT5G42760			Leucine carboxyl methyltransfe...		Potri.002G260300 [exp]	5.91	0.9691
AT4G34740		CIA1, ATASE2, A...	CHLOROPLAST IMPORT APPARATUS 1...		Potri.009G125600 [exp]	6.48	0.9680
AT5G19875			unknown protein		Potri.001G231300 [exp]	8.48	0.9647
AT3G56010			unknown protein		Potri.008G070700 [exp]	9.21	0.9535
AT1G45616		AtRLP6	receptor like protein 6 (.1)		Potri.011G021332 [exp]	10.39	0.9533

Compare expression of checked genes

Potri.009G077900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.