Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G37060 677 / 0 ATCHX24 cation/H+ exchanger 24, ARABIDOPSIS THALIANA CATION/H+ EXCHANGER 24, cation/H+ exchanger 24 (.1) AT5G58460 643 / 0 ATCHX25 cation/H+ exchanger 25, ARABIDOPSIS THALIANA CATION/H+ EXCHANGER 25, cation/H+ exchanger 25 (.1) AT2G13620 435 / 2e-140 ATCHX15 CATION/H+ EXCHANGER 15, cation/hydrogen exchanger 15 (.1) AT1G06970 330 / 1e-100 ATCHX14, CHX14 cation/hydrogen exchanger 14 (.1) AT5G22900 312 / 5e-94 ATCHX3 cation/H+ exchanger 3, ARABIDOPSIS THALIANA CATION/H+ EXCHANGER 3, cation/H+ exchanger 3 (.1) AT3G17630 308 / 1e-92 ATCHX19 cation/H+ exchanger 19, cation/H+ exchanger 19, cation/H+ exchanger 19 (.1) AT3G44900 306 / 9e-92 ATCHX4 cation/H+ exchanger 4, cation/H+ exchanger 4, cation/H+ exchanger 4 (.1) AT1G05580 291 / 1e-85 ATCHX23 cation/H+ exchanger 23, cation/H+ exchanger 23, cation/H+ exchanger 23 (.1), cation/H+ exchanger 23 (.2) AT4G23700 287 / 1e-84 ATCHX17 cation/H+ exchanger 17, cation/H+ exchanger 17, cation/H+ exchanger 17 (.1) AT2G30240 285 / 7e-84 ATCHX13 CATION/H+ EXCHANGER 13, Cation/hydrogen exchanger family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G282800 [exp] 611 / 0 AT5G37060 604 / 0.0 cation/H+ exchanger 24, ARABIDOPSIS THALIANA CATION/H+ EXCHANGER 24, cation/H+ exchanger 24 (.1) Potri.007G105200 [exp] 419 / 2e-134 AT2G13620 1112 / 0.0 CATION/H+ EXCHANGER 15, cation/hydrogen exchanger 15 (.1) Potri.019G123700 [exp] 391 / 1e-123 AT2G13620 536 / 4e-179 CATION/H+ EXCHANGER 15, cation/hydrogen exchanger 15 (.1) Potri.010G183000 [exp] 337 / 2e-103 AT2G13620 474 / 8e-156 CATION/H+ EXCHANGER 15, cation/hydrogen exchanger 15 (.1) Potri.019G123800 [exp] 323 / 1e-98 AT2G13620 443 / 5e-144 CATION/H+ EXCHANGER 15, cation/hydrogen exchanger 15 (.1) Potri.016G127800 [exp] 321 / 1e-97 AT5G01680 436 / 6e-142 cation/H+ exchanger 26, ARABIDOPSIS THALIANA CATION/HYDROGEN EXCHANGER 26, cation/H+ exchanger 26 (.1) Potri.001G096320 [exp] 315 / 5e-95 AT5G41610 1069 / 0.0 cation/H+ exchanger 18, ARABIDOPSIS THALIANA CATION/H+ EXCHANGER 18, cation/H+ exchanger 18 (.1), cation/H+ exchanger 18 (.2) Potri.013G142301 [exp] 315 / 5e-95 AT5G41610 1067 / 0.0 cation/H+ exchanger 18, ARABIDOPSIS THALIANA CATION/H+ EXCHANGER 18, cation/H+ exchanger 18 (.1), cation/H+ exchanger 18 (.2) Potri.003G134900 [exp] 308 / 1e-92 AT5G41610 989 / 0.0 cation/H+ exchanger 18, ARABIDOPSIS THALIANA CATION/H+ EXCHANGER 18, cation/H+ exchanger 18 (.1), cation/H+ exchanger 18 (.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042254 [exp] 656 / 0 AT5G37060 659 / 0.0 cation/H+ exchanger 24, ARABIDOPSIS THALIANA CATION/H+ EXCHANGER 24, cation/H+ exchanger 24 (.1) Lus10026398 [exp] 648 / 0 AT5G37060 649 / 0.0 cation/H+ exchanger 24, ARABIDOPSIS THALIANA CATION/H+ EXCHANGER 24, cation/H+ exchanger 24 (.1) Lus10031283 [exp] 645 / 0 AT5G37060 672 / 0.0 cation/H+ exchanger 24, ARABIDOPSIS THALIANA CATION/H+ EXCHANGER 24, cation/H+ exchanger 24 (.1) Lus10031852 [exp] 613 / 0 AT5G37060 605 / 0.0 cation/H+ exchanger 24, ARABIDOPSIS THALIANA CATION/H+ EXCHANGER 24, cation/H+ exchanger 24 (.1) Lus10030013 [exp] 403 / 7e-128 AT2G13620 1160 / 0.0 CATION/H+ EXCHANGER 15, cation/hydrogen exchanger 15 (.1) Lus10035312 [exp] 399 / 1e-125 AT2G13620 1160 / 0.0 CATION/H+ EXCHANGER 15, cation/hydrogen exchanger 15 (.1) Lus10017540 [exp] 315 / 1e-94 AT5G41610 1013 / 0.0 cation/H+ exchanger 18, ARABIDOPSIS THALIANA CATION/H+ EXCHANGER 18, cation/H+ exchanger 18 (.1), cation/H+ exchanger 18 (.2) Lus10043128 [exp] 306 / 9e-92 AT3G44900 540 / 0.0 cation/H+ exchanger 4, cation/H+ exchanger 4, cation/H+ exchanger 4 (.1) Lus10026408 [exp] 292 / 2e-86 AT2G13620 441 / 2e-142 CATION/H+ EXCHANGER 15, cation/hydrogen exchanger 15 (.1) Lus10032332 [exp] 283 / 3e-83 AT4G23700 1030 / 0.0 cation/H+ exchanger 17, cation/H+ exchanger 17, cation/H+ exchanger 17 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0064 [poplar] [flax] CPA_AT PF00999 [poplar] [flax] Na_H_Exchanger Sodium/hydrogen exchanger family
Representative CDS sequence Show only first row Show all	>Potri.009G078000.1 pacid=42772866 polypeptide=Potri.009G078000.1.p locus=Potri.009G078000 ID=Potri.009G078000.1.v4.1 annot-version=v4.1 ATGGTCAGATTTGTCCAATTGTATCATCCCCTCCCTGATCACGCGAGATGGAGACATGCAGAACAATATTCCCGCGATCTTCTTCAGACTACAGAGGAAG TTGATGAGTCCAGTAGTACTACTCCTCATCATGTCTTTATATGTCGAAGAACTCATCCTAGTCACTGCCTGGGCATTTTCCACGGAGAAAACCCTTTGAA CTGCTCCTTTAACATCATCTTATTTGATCTTGTTTTGATGATTTTGATTACTACCATGCTCCGTCTTCTTCTCAAGCCTTTAAAACAGCCAAGGATCGTC TCAGAGATTATTGCTGGCATATTCGTTGGACCCTCTGTTCTAGGCAAGAGCAAGAAGTTAACCGAGCAGGTGTTACCAGATAATGCCCAGTTTGTGGTGG CGAATCTTGGAGCTATTGGTTTTGCATATTTCCTTTTTGTGACTTCAGTGGAAACGGATTTCAGTGTACTTAGAAAAGTAGGGAAGAAACACGTCTACAG TGCCGTGATAGGAGTCTTTTTTCCAATTACAACAGTGTGTATTGTTGCATACTGTTTTAAATCATCAATTCATGGGAACCTTGCAAAACCTGTTGGGATT GGAAGCGTTGCTTCAAGTGTGTCAGTAACTGTATTTCCTGTGATTTATCTTATACTTAAAGAGTTACGACTACTAAGTTCTGAGGTTGGACGGATGGCAA TGGCCACAGCAATGGTAAGTGATGTGATGGGGATTATTCTTGTTTTTGCATTTGTAGCAGTGAAACATGGTCAACATAGTGGTGCCGATGCTTTGTGGTT TATGATTTCTGTGATAGTTCTAATGGCCTTTGCGATTATTGTGATTCGGAGCGTACTGCTCTGGGTTGTTGAAAAAACCCCCGAAGGGAAACCTGTAGAT CGGTCATATGTGGTTCTCATTTTGTTGGGGGTATTGGTGATGACATTTTTTAGCGACATGTTTGGTCTGGTCTTTCTTCATGCATCGTTGCTGCTGGGGA TTGTGATGCCTGATGGGCCTCCACTAGGGGCAACCATGGTGCAAAGGAGCCGAACAATAGTAATGGAGCTTCTTATGCCATTTACATTTGCAATCTTGGG ATTGAATGTGGATGTCTTTGCCATGGCCAATTATGGCTGGTCGAATTTGGAACCGCTATTTGCCATGGTTATTGCAGGGTATCTCTCCAAATTGATTGCA ACTTCTGCTGTTGCTCTCTTCTTTGGAGTTCCATTCAAAGAGAGTTTCACTCTCGGTCTCATGATGAACTTGAGAGGTTTATACGAGGTTACAATATTTT TGAAATGGCTTGACGAAGGGATTTTGGAGACCCCTACCTACACATTGATGCTGCTATTAACAACATTGATGACTGGCACATGTTCAGCTTTGATTTGCTT CATCTACGATCCCACAAAGCAATACATGACAAACAAAAGAAGAACCATACAACACACCCCTCCAGGAACAGAGCTCAGCATATTAGTTGGCATCCACGAT GAAGAATGTGTAGCAGGGCTCATTAACCTCCTCGAGACCTCACATCCAACTATGACCAGCCCTTTTGCAGTCTATGCCATCCATCTATTTGAGCTTGTAG GCCGTGCGTTTCCCGTGTTCATAGACCATGATAAACCAGAACGACCACCCAAGTATATAAACTACAAAAAAATTCACAATGCCCTAAAGCTCTATCAAAA ACCAAGAAGTGAATATGTCAAACTACGTTCCTACACTGTTGCGGCAGTGAAGCGAACTATGCACCAAGACATTTGCGATTTGGCTTTGACATATAAAGCT ACTCTAATCCTTTTACCTTTCTGCAATAAAAGACTTGATAACCTTGCAGGAAGTGAAATTGTCAGGCATGTTTATGGAATGCAATCTATAAACTCTAGAG TCCTAGCCAATTCACCTTGCTCAATTGGAATTCTTGTCGACAAGGGTTACACTCATAACCCTATTGCCATGCAATATTACCATCAGCTCTTCTTTCGCAG ATGTGTTGTTCTATTTTTGGGAGGAGCGGATTCTCGAGAGGCACTTGCCTACGCGGACAGGATGGCTACTAATCCTGAAGTTTCTCTCACGGCGATAAGG TTCCTCTCATACAATAATATTGGAGATGATGAGATGGAGAAGAAGCTTGATGACGGTGTGGTGACATGGTTTTGGGTGAAGAATGAAGGGAATAGCAGAG TGGCTTATAGAGAGGTGGTGGTGAGAAATGGAGAAGAAACTCTAGCAGCAATCCAGGCATTGGACAACGATACTAATGAACTTTGGATAGTGGGAAGGAA ACAAGGAATAAACCAGGTGCTCCTTGAGGGATTGTCAAAGTTGAGTGAAAATCCTGAATTGGGAGTGATTGGAGATTATGTTGCATCCACTGATTTTGGT AGCACAGCTTCTGTGTTAGTAGTACATCAGCAAATTATGAGAGGATGA
AA sequence Show only first row Show all	>Potri.009G078000.1 pacid=42772866 polypeptide=Potri.009G078000.1.p locus=Potri.009G078000 ID=Potri.009G078000.1.v4.1 annot-version=v4.1 MVRFVQLYHPLPDHARWRHAEQYSRDLLQTTEEVDESSSTTPHHVFICRRTHPSHCLGIFHGENPLNCSFNIILFDLVLMILITTMLRLLLKPLKQPRIV SEIIAGIFVGPSVLGKSKKLTEQVLPDNAQFVVANLGAIGFAYFLFVTSVETDFSVLRKVGKKHVYSAVIGVFFPITTVCIVAYCFKSSIHGNLAKPVGI GSVASSVSVTVFPVIYLILKELRLLSSEVGRMAMATAMVSDVMGIILVFAFVAVKHGQHSGADALWFMISVIVLMAFAIIVIRSVLLWVVEKTPEGKPVD RSYVVLILLGVLVMTFFSDMFGLVFLHASLLLGIVMPDGPPLGATMVQRSRTIVMELLMPFTFAILGLNVDVFAMANYGWSNLEPLFAMVIAGYLSKLIA TSAVALFFGVPFKESFTLGLMMNLRGLYEVTIFLKWLDEGILETPTYTLMLLLTTLMTGTCSALICFIYDPTKQYMTNKRRTIQHTPPGTELSILVGIHD EECVAGLINLLETSHPTMTSPFAVYAIHLFELVGRAFPVFIDHDKPERPPKYINYKKIHNALKLYQKPRSEYVKLRSYTVAAVKRTMHQDICDLALTYKA TLILLPFCNKRLDNLAGSEIVRHVYGMQSINSRVLANSPCSIGILVDKGYTHNPIAMQYYHQLFFRRCVVLFLGGADSREALAYADRMATNPEVSLTAIR FLSYNNIGDDEMEKKLDDGVVTWFWVKNEGNSRVAYREVVVRNGEETLAAIQALDNDTNELWIVGRKQGINQVLLEGLSKLSENPELGVIGDYVASTDFG STASVLVVHQQIMRG

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G37060		ATCHX24	cation/H+ exchanger 24, ARABID...		Potri.009G078000 [exp]	0	1
AT3G46620			zinc finger (C3HC4-type RING f...		Potri.006G164516 [exp]	5.00	0.7975
AT3G62270			HCO3- transporter family (.1)		Potri.015G077600 [exp]	15.96	0.7651
AT3G18960	B3		AP2/B3-like transcriptional fa...		Potri.012G093200 [exp]	16.15	0.7081
					Potri.015G116300 [exp]	23.91	0.7015
AT4G21540		SPHK1	sphingosine kinase 1 (.1.2.3)		Potri.011G043500 [exp]	28.93	0.6603
AT2G31955		CNX2	cofactor of nitrate reductase ...		Potri.001G230604 [exp]	32.55	0.6694
AT5G02880		UPL4	ubiquitin-protein ligase 4 (.1...		Potri.006G132000 [exp]	40.47	0.6691
					Potri.002G068501 [exp]	40.54	0.7250
AT1G50440			RING/FYVE/PHD zinc finger supe...		Potri.010G252900 [exp]	46.64	0.5502
AT4G38840			SAUR-like auxin-responsive pro...		Potri.004G164600 [exp]	46.98	0.6309	SAUR68

Compare expression of checked genes

Potri.009G078000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.