Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G23970 211 / 2e-68 Class I glutamine amidotransferase-like superfamily protein (.1) AT4G30550 203 / 2e-65 GGP3 gamma-glutamyl peptidase 3, Class I glutamine amidotransferase-like superfamily protein (.1) AT4G30540 176 / 1e-54 Class I glutamine amidotransferase-like superfamily protein (.1) AT4G30530 174 / 5e-54 GGP1 gamma-glutamyl peptidase 1, Class I glutamine amidotransferase-like superfamily protein (.1) AT2G23960 171 / 8e-53 Class I glutamine amidotransferase-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G102000 [exp] 247 / 2e-82 AT2G23970 308 / 1e-106 Class I glutamine amidotransferase-like superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014635 [exp] 268 / 1e-90 AT2G23970 233 / 8e-77 Class I glutamine amidotransferase-like superfamily protein (.1) Lus10033793 [exp] 259 / 2e-87 AT2G23970 239 / 4e-79 Class I glutamine amidotransferase-like superfamily protein (.1) Lus10019964 [exp] 218 / 4e-71 AT2G23970 279 / 6e-95 Class I glutamine amidotransferase-like superfamily protein (.1) Lus10015493 [exp] 105 / 2e-28 AT4G30550 96 / 8e-25 gamma-glutamyl peptidase 3, Class I glutamine amidotransferase-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0014 [poplar] [flax] Glutaminase_I PF00117 [poplar] [flax] GATase Glutamine amidotransferase class-I
Representative CDS sequence Show only first row Show all	>Potri.009G078200.1 pacid=42772745 polypeptide=Potri.009G078200.1.p locus=Potri.009G078200 ID=Potri.009G078200.1.v4.1 annot-version=v4.1 ATGGGTGGCAAGAGGTTTGCGGTTTTGTTATGCGCAGAGGACTCAGAATACGTGATAAAGATGCACGGAGGGTATTTTGGGGTGTTTGTGAGAATGTTGG CTGAAGAAGGAGAGACATGGATTGTTTACAGGGTGGCTTCTGGAGAGTTCCCTGAAGATGATGAGACTGACACCTTTGATGGATTTGTGATCACTGGAAG CTGCAATGATGCTCATGGCAATGATGTTTGGATCTGCAAGCTTTTGAGTCTGTTAAAGAAACTGGATTCGAAAAAGAAAAAAATTCTGGGTATTTGCTTC GGCCACCAGATACTATGCCGTGCTCTGGGGGGGAAGACTGGACGCGCCGTCTCAGGGTGGGATATAGGGATAAGAACCATCAATTTTTCAGCTTCATCGA AGCTCTCCTCCTCGGTGAAAATGCCTGCTGTCCTCTCGGTGATCGAATGTCACAGAGACGAGGTCAAGGAACTTCCTGCTAGAGCCGAGGTGATTGCGTG GTCTGATAAGACCGGGGTCGAGATGTTCCGATGTGGGGACCACATCATGGGCATCCAAGGTCACCCTGAGTACACCAAAGACATTCTCTTCCACTTGATC AACCGCCTTCTCCAACGCGATTTCATAGTGGACTCCTATGCTGACAAGATAAAGGCAAACGTGGACGGAACCGAACCGGATAGGGAGGCATGGAAGAAAC TGTGCATCAACTTTCTCAAGGGTTGA
AA sequence Show only first row Show all	>Potri.009G078200.1 pacid=42772745 polypeptide=Potri.009G078200.1.p locus=Potri.009G078200 ID=Potri.009G078200.1.v4.1 annot-version=v4.1 MGGKRFAVLLCAEDSEYVIKMHGGYFGVFVRMLAEEGETWIVYRVASGEFPEDDETDTFDGFVITGSCNDAHGNDVWICKLLSLLKKLDSKKKKILGICF GHQILCRALGGKTGRAVSGWDIGIRTINFSASSKLSSSVKMPAVLSVIECHRDEVKELPARAEVIAWSDKTGVEMFRCGDHIMGIQGHPEYTKDILFHLI NRLLQRDFIVDSYADKIKANVDGTEPDREAWKKLCINFLKG

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G23970			Class I glutamine amidotransfe...		Potri.009G078200 [exp]	0	1
AT1G54200			unknown protein		Potri.001G170500 [exp]	1.00	0.8463
					Potri.017G094750 [exp]	4.00	0.6690
AT2G26170		CYP711A1, MAX1	MORE AXILLARY BRANCHES 1, "cyt...		Potri.006G226700 [exp]	5.00	0.6853	Pt-CYP711.1
AT4G36250		ALDH3F1	aldehyde dehydrogenase 3F1 (.1...		Potri.007G017100 [exp]	6.48	0.6785	Pt-ALDH3.2
AT3G08860		PYD4	PYRIMIDINE 4 (.1)		Potri.006G106800 [exp]	15.81	0.6476
AT1G67030	C2H2ZnF	ZFP6	zinc finger protein 6 (.1)		Potri.014G123700 [exp]	25.69	0.6363
AT3G54700		PHT1;7	phosphate transporter 1;7 (.1)		Potri.005G175500 [exp]	32.18	0.5531	Pt-PT2.7,PtrPht1-6
AT2G04160		AIR3	AUXIN-INDUCED IN ROOT CULTURES...		Potri.007G102100 [exp]	33.13	0.6342
AT3G61220		SDR1	short-chain dehydrogenase/redu...		Potri.004G235500 [exp]	33.22	0.6352
AT1G73590		ATPIN1, PIN1	ARABIDOPSIS THALIANA PIN-FORME...		Potri.012G047200 [exp]	34.64	0.6207	PIN7,Pt-PIN1.2

Compare expression of checked genes

Potri.009G078200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.