Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G74520 103 / 9e-26 ATHVA22A HVA22 homologue A (.1) AT1G69700 94 / 3e-22 ATHVA22C HVA22 homologue C (.1) AT5G62490 87 / 9e-20 ATHVA22B ARABIDOPSIS THALIANA HVA22 HOMOLOGUE B, HVA22 homologue B (.1) AT2G42820 77 / 2e-16 HVA22F HVA22-like protein F (.1) AT5G50720 67 / 2e-13 ATHVA22E ARABIDOPSIS THALIANA HVA22 HOMOLOGUE E, HVA22 homologue E (.1) AT4G24960 64 / 3e-12 ATHVA22D ARABIDOPSIS THALIANA HVA22 HOMOLOGUE D, HVA22 homologue D (.1.2.3) AT2G24030 49 / 4e-06 zinc ion binding;nucleic acid binding (.1.2) AT4G36720 44 / 0.0001 HVA22K HVA22-like protein K (.1) AT5G61190 44 / 0.0002 C2H2ZnF putative endonuclease or glycosyl hydrolase with C2H2-type zinc finger domain (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G283000 [exp] 625 / 0 AT1G74520 98 / 1e-23 HVA22 homologue A (.1) Potri.017G139000 [exp] 299 / 2e-97 AT1G74520 119 / 5e-32 HVA22 homologue A (.1) Potri.012G069300 [exp] 98 / 7e-24 AT1G74520 259 / 1e-89 HVA22 homologue A (.1) Potri.015G062800 [exp] 97 / 2e-23 AT1G74520 255 / 4e-88 HVA22 homologue A (.1) Potri.001G006000 [exp] 82 / 2e-18 AT2G42820 235 / 1e-80 HVA22-like protein F (.1) Potri.005G152100 [exp] 84 / 3e-17 AT1G69700 102 / 1e-25 HVA22 homologue C (.1) Potri.014G148600 [exp] 70 / 3e-14 AT5G62490 87 / 1e-22 ARABIDOPSIS THALIANA HVA22 HOMOLOGUE B, HVA22 homologue B (.1) Potri.015G099700 [exp] 68 / 2e-13 AT5G50720 166 / 5e-54 ARABIDOPSIS THALIANA HVA22 HOMOLOGUE E, HVA22 homologue E (.1) Potri.012G101600 [exp] 66 / 7e-13 AT5G50720 133 / 3e-41 ARABIDOPSIS THALIANA HVA22 HOMOLOGUE E, HVA22 homologue E (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023605 [exp] 100 / 3e-24 AT1G74520 246 / 7e-84 HVA22 homologue A (.1) Lus10024234 [exp] 100 / 5e-24 AT1G74520 244 / 5e-83 HVA22 homologue A (.1) Lus10037191 [exp] 99 / 1e-23 AT1G69700 231 / 6e-78 HVA22 homologue C (.1) Lus10042193 [exp] 97 / 5e-21 AT5G39850 327 / 2e-108 Ribosomal protein S4 (.1) Lus10008623 [exp] 80 / 3e-17 AT1G74520 234 / 5e-80 HVA22 homologue A (.1) Lus10031386 [exp] 74 / 2e-15 AT2G42820 246 / 4e-85 HVA22-like protein F (.1) Lus10010944 [exp] 73 / 7e-15 AT2G42820 246 / 7e-85 HVA22-like protein F (.1) Lus10032557 [exp] 72 / 7e-15 AT5G50720 172 / 8e-57 ARABIDOPSIS THALIANA HVA22 HOMOLOGUE E, HVA22 homologue E (.1) Lus10043186 [exp] 69 / 9e-14 AT5G50720 169 / 1e-55 ARABIDOPSIS THALIANA HVA22 HOMOLOGUE E, HVA22 homologue E (.1) Lus10020460 [exp] 61 / 7e-10 AT2G19380 53 / 2e-07 RNA recognition motif (RRM)-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0361 [poplar] [flax] C2H2-zf PF12874 [poplar] [flax] zf-met Zinc-finger of C2H2 type
Representative CDS sequence Show only first row Show all	>Potri.009G078500.1 pacid=42770851 polypeptide=Potri.009G078500.1.p locus=Potri.009G078500 ID=Potri.009G078500.1.v4.1 annot-version=v4.1 ATGATGAGTTCTGTAGGGCTTTTGAAATTTGCGGTGAAATGCCTTGATATTCTTGCATGGCCTGTTTTTGGTTTGGGTTATCCTTTATGTGCTTCCATTC TAGCGATCGAGACTAATTCAAACTCAGACACCCAGAAGCTGATCACATATTGGGTATCCATTTCTGTGGTTTTGCTCTTTGAGCATACCTTTCAGCTTCA GTGGCTAGCCTTCTGGCCATACATCAAGCTGATGATTGTCGGCTGCTTGGTTCTGCCTTACTTTCATGGTTCCCTTCATGTCTATAAACACCTTGTTCTT CCATGTCTATCCATGGGCCCTAGAATTATCACCTGCCAGTTCAACAAACTGAAGTTATTTTTCAAGAAAGATGATTTTCTTGTTGAGGTGAAGAGGTATA TGAAGGAAAATGGCTCTGATGCTTTGGAGGATCTCATTGCTTCCACGAAAATGAGTGCAAAGCCTAATGTCGCTGTGAACGAGATCAGGGCAGTTGCAGC AGAGGATTGGCCAAAGTCCGAACAACCAAAACTTCCAGTTCGATATAAAGACAGTAATGCTGTCAAGATAACAGAGAAGATAGAAGTTGCATCAACCAAG CAGCTTAAGTTGGAACAACCTAAACTTCCAGTTCGACTTGAAGACAGTAACGCTGTGGAAGTAACAGAGAAAAAAGAAGTAAAAGAAGTTGCATCAACTG CGCAGCTGAAGTTTGAACAACCTAAACTTCCAGTTCTATTCAAAGACAGTAATGCTGCGGAAATAACAGAGAAAAGGGAAGTCACATCAACCAAGCAGGT TAGACAAGTAGAATCTAACATCAGTCAGACAGAAAACAGTACATTTCCACCTCTGGAGTTCATAAACACAGTAACAACAACAGAAGGAGGCAGAGATCTT TGCGAGATACTACCTCCCGAGAAAGTCCTAAATGTATGGACTTGTGCTATATGTCAAATGACAGTCCAAAGTGAGACAGTTCTTAATTCACACCTCCAAG GGAACCGACACAAGGCTGCTTGTGAACGGCTAAAAGTCAAGAATCAGATACCAAAAAGCGAGGTTCCCCCTGTTTCAGAGGGAAAGAAATTTAATGTTAC CACAGCAACCGGGATTGATGTTACTTGTGTTGTATGTCAGTTAACACTTAAAAATCAGATAGATCTTAGCTCACATCTTCAAGGAAAAAGACACAAGAAA GCTTGTGAGCTGCTGAACTCCAAGAACCAGTCATCAAACAGCAATGTTTCCCCTGCTTCAGTGGGAAAGAACGCTAATTTTCCTGAAAGCAAGGCAGAGA AGTGTACGGTCAACAATAGTACTCCACCTGAAAATAGAATACATGAAGCGAAGAAGCTAGAGAACCTGATGAAGAGCCGATTTGTAGAGATTAGAGATTC TAAGTGGTGGTGTACAATCTGCAATATAAGTTGCACCGGTGAAGGAAACATGCGAAGTCATCTTAATGCGAAGAAGCACTTGACTAGGATGCGAGCATTG GATGGTCCTGGAAGCGGTGTCCATGCCTGA
AA sequence Show only first row Show all	>Potri.009G078500.1 pacid=42770851 polypeptide=Potri.009G078500.1.p locus=Potri.009G078500 ID=Potri.009G078500.1.v4.1 annot-version=v4.1 MMSSVGLLKFAVKCLDILAWPVFGLGYPLCASILAIETNSNSDTQKLITYWVSISVVLLFEHTFQLQWLAFWPYIKLMIVGCLVLPYFHGSLHVYKHLVL PCLSMGPRIITCQFNKLKLFFKKDDFLVEVKRYMKENGSDALEDLIASTKMSAKPNVAVNEIRAVAAEDWPKSEQPKLPVRYKDSNAVKITEKIEVASTK QLKLEQPKLPVRLEDSNAVEVTEKKEVKEVASTAQLKFEQPKLPVLFKDSNAAEITEKREVTSTKQVRQVESNISQTENSTFPPLEFINTVTTTEGGRDL CEILPPEKVLNVWTCAICQMTVQSETVLNSHLQGNRHKAACERLKVKNQIPKSEVPPVSEGKKFNVTTATGIDVTCVVCQLTLKNQIDLSSHLQGKRHKK ACELLNSKNQSSNSNVSPASVGKNANFPESKAEKCTVNNSTPPENRIHEAKKLENLMKSRFVEIRDSKWWCTICNISCTGEGNMRSHLNAKKHLTRMRAL DGPGSGVHA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G74520		ATHVA22A	HVA22 homologue A (.1)		Potri.009G078500 [exp]	0	1
					Potri.002G182100 [exp]	6.78	0.8423
AT3G22380		TIC	time for coffee (.1.2)		Potri.003G029500 [exp]	7.07	0.8049
AT5G13190		AtGILP	GSH-induced LITAF domain prote...		Potri.001G061900 [exp]	19.33	0.7883
AT3G47570			Leucine-rich repeat protein ki...		Potri.011G103000 [exp]	20.09	0.7491
AT3G17100	bHLH	bHLH147, AIF3	sequence-specific DNA binding ...		Potri.008G103500 [exp]	23.64	0.7994
AT5G45110		ATNPR3, NPR3	NPR1-like protein 3 (.1)		Potri.015G113466 [exp]	24.49	0.7871
AT3G26790	B3	FUS3	FUSCA 3, AP2/B3-like transcrip...		Potri.004G220300 [exp]	27.22	0.7903
					Potri.003G152800 [exp]	29.10	0.7598
AT5G45110		ATNPR3, NPR3	NPR1-like protein 3 (.1)		Potri.015G116900 [exp]	34.98	0.7613
AT1G63830			PLAC8 family protein (.1.2.3)		Potri.001G101100 [exp]	37.33	0.7577

Compare expression of checked genes

Potri.009G078500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.