Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G14170 751 / 0 ALDH6B2 aldehyde dehydrogenase 6B2 (.1.2.3) AT1G79440 179 / 1e-48 ENF1, SSADH1, ALDH5F1 SUCCINIC SEMIALDEHYDE DEHYDROGENASE 1, SUCCINIC SEMIALDEHYDE DEHYDROGENASE, ENLARGED FIL EXPRESSION DOMAIN 1, aldehyde dehydrogenase 5F1 (.1) AT3G24503 175 / 2e-47 ALDH1A, REF1, ALDH2C4 REDUCED EPIDERMAL FLUORESCENCE1, aldehyde dehydrogenase 1A, aldehyde dehydrogenase 2C4 (.1) AT1G23800 165 / 1e-43 ALDH2B7 aldehyde dehydrogenase 2B7 (.1) AT1G74920 164 / 1e-43 ALDH10A8 aldehyde dehydrogenase 10A8 (.1.2) AT3G48170 157 / 5e-41 ALDH10A9 aldehyde dehydrogenase 10A9 (.1) AT3G48000 153 / 1e-39 ALDH2A, ALDH2B4 aldehyde dehydrogenase 2A, aldehyde dehydrogenase 2B4 (.1) AT1G54100 136 / 5e-34 ALDH7B4 aldehyde dehydrogenase 7B4 (.1.2) AT2G24270 134 / 2e-33 ALDH11A3 aldehyde dehydrogenase 11A3 (.1.2.3.4) AT3G66658 100 / 1e-21 ALDH22A1 aldehyde dehydrogenase 22A1 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G147700 [exp] 989 / 0 AT2G14170 763 / 0.0 aldehyde dehydrogenase 6B2 (.1.2.3) Potri.009G078600 [exp] 798 / 0 AT2G14170 893 / 0.0 aldehyde dehydrogenase 6B2 (.1.2.3) Potri.001G283100 [exp] 791 / 0 AT2G14170 891 / 0.0 aldehyde dehydrogenase 6B2 (.1.2.3) Potri.001G242333 [exp] 788 / 0 AT2G14170 895 / 0.0 aldehyde dehydrogenase 6B2 (.1.2.3) Potri.010G174000 [exp] 184 / 2e-50 AT1G79440 810 / 0.0 SUCCINIC SEMIALDEHYDE DEHYDROGENASE 1, SUCCINIC SEMIALDEHYDE DEHYDROGENASE, ENLARGED FIL EXPRESSION DOMAIN 1, aldehyde dehydrogenase 5F1 (.1) Potri.018G075000 [exp] 171 / 7e-46 AT3G24503 751 / 0.0 REDUCED EPIDERMAL FLUORESCENCE1, aldehyde dehydrogenase 1A, aldehyde dehydrogenase 2C4 (.1) Potri.015G070600 [exp] 166 / 3e-44 AT1G74920 896 / 0.0 aldehyde dehydrogenase 10A8 (.1.2) Potri.002G189900 [exp] 164 / 4e-43 AT1G23800 899 / 0.0 aldehyde dehydrogenase 2B7 (.1) Potri.012G075600 [exp] 162 / 1e-42 AT1G74920 861 / 0.0 aldehyde dehydrogenase 10A8 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020459 [exp] 751 / 0 AT2G14170 861 / 0.0 aldehyde dehydrogenase 6B2 (.1.2.3) Lus10007084 [exp] 746 / 0 AT2G14170 850 / 0.0 aldehyde dehydrogenase 6B2 (.1.2.3) Lus10023625 [exp] 174 / 5e-47 AT3G24503 749 / 0.0 REDUCED EPIDERMAL FLUORESCENCE1, aldehyde dehydrogenase 1A, aldehyde dehydrogenase 2C4 (.1) Lus10023626 [exp] 175 / 7e-47 AT3G24503 753 / 0.0 REDUCED EPIDERMAL FLUORESCENCE1, aldehyde dehydrogenase 1A, aldehyde dehydrogenase 2C4 (.1) Lus10024259 [exp] 167 / 1e-44 AT3G24503 745 / 0.0 REDUCED EPIDERMAL FLUORESCENCE1, aldehyde dehydrogenase 1A, aldehyde dehydrogenase 2C4 (.1) Lus10042149 [exp] 160 / 7e-42 AT1G74920 850 / 0.0 aldehyde dehydrogenase 10A8 (.1.2) Lus10029166 [exp] 159 / 1e-41 AT1G23800 886 / 0.0 aldehyde dehydrogenase 2B7 (.1) Lus10012999 [exp] 156 / 2e-40 AT1G23800 889 / 0.0 aldehyde dehydrogenase 2B7 (.1) Lus10001845 [exp] 152 / 4e-39 AT1G79440 741 / 0.0 SUCCINIC SEMIALDEHYDE DEHYDROGENASE 1, SUCCINIC SEMIALDEHYDE DEHYDROGENASE, ENLARGED FIL EXPRESSION DOMAIN 1, aldehyde dehydrogenase 5F1 (.1) Lus10034115 [exp] 146 / 8e-37 AT3G48170 825 / 0.0 aldehyde dehydrogenase 10A9 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0099 [poplar] [flax] ALDH-like PF00171 [poplar] [flax] Aldedh Aldehyde dehydrogenase family
Representative CDS sequence Show only first row Show all	>Potri.009G078700.1 pacid=42772639 polypeptide=Potri.009G078700.1.p locus=Potri.009G078700 ID=Potri.009G078700.1.v4.1 annot-version=v4.1 ATGACGGATATTCAGAGTAGTAGTGGAAGTGGATTGGATGAAGCTCAAATGCAGATGCAACCACCTCCTCCTGGAACTTTTGTAGATCGTGAAGAACTTA TACAACATGTTGGGGACTTTGCTGTATCTCAAGGATATGTTGTAACCATCAAGCAGTCCAAGAGAGAAAGAGTAGTGGTACTTGGCTGTGATAGGGGAGG TGTTTACCGTAACAGGAAGAAAGCTGATGAAGAGACTTCGGCTGAACGGAAGCGCAGAAAAAGATCTGGTTCACGACTTACTAACTGTCCCTTTGAAGCT GTGGGTAAGAAGGATGATGGGTTGTGGGTGCTTACTATTAAAAACGGAACACACAACCATGAGCCACTGAAGGACATTACAGAACATCCTTCTGCTCGTC GCTTTTCTGAGAGTGAGATTGTGTTGATTAAGGAGATGACAGAAGCTGGATTAAAACCTCGCCAGATTCTGAAGCGACTGAGACAAAGCAATCCAGAGCT TTTGTCCACTCCAAAGCATGTTTACAATGTTAAAGCCAAACTTCGACAAGGAAATATGACAGTGAGAAATTTCAAGTCATTGAGACCTGAGAAATCTGCT GGAAGGGACAAACATCTCTCAATTGCTGAGCCTTCTTGGAGGCAGCGCTACCCCATGAGGGTTCCTAATTTTATTGGCGGTAGACTTGTTAATTCACAGT CATTTGCGTCCATCGATGTCATAAATCCTGCAACACAGCAAGTTGTTTCTCAAGTTCCTCTAACTACAAATGAGGAGTTCAGAGCTGCAGTTTTTGCAGC AAAGCGAGCTTTTCCACAGTGGAGAGACACACCTATTACCACCCGTCAACGCATCATGTTCAAGTTCCAAGAGCTTATTCGGAGAGATATTGACAAACTA GCCATGAGCATTACTACTGAACATGGAAAGACTTTGAAGGATGCACATGGTGATGTATTACGAGGATTAGAGGTGGTGGAACATGCTTGTGGATTGGCAT CTCTGCAGATTGGGGAGTTTGTTTCCAACATATCGAGTGGAATTGATACCTATAGCATTAGAGAACCACTTGGTGTCTGTGCTGGGATATGCCCTTTTGA GTTTCCAGCTATGATCCCACTATGGATTTTTCCAATTGCTGTCACATGTGGTAATACCTTTATTCTAAAGCCATCGGAGAAGGACCCAGGGGCTTCTGTG ATGCTTGCAGAGTTAGCTATGGAGGCTGGTTTGCCTAATGGTGTCTTAAATATTGTCCATGGCACTAATGAAATTATTAATGGTATTTGCGATGACGATG ATATTAAAGCTATTTCATTTGTCGGTCCAAATGCGGTTGGTGCTTATGTGTATGCAAGAGCATCAGCTAAAGGAAAACGTACACAGTCCAATATTGGAGC CAAAAATCATGCAGTTATCATGCCCGATGCAAGTGTGGGTGCTACCATAAATGCTCTAGTTGCTGCTGGCTTTGGTGGTGCAGGACAAAAGTGCATGGCC CTGAACATGGCTGTCTTTGTTGGAGGCCTAGGCCCATGGGAAGAGAAGTTAGTAGAGCATGCCAAGGCACTTAAAGTAACCTCTGGAACAGAACCGGATG CAGAGCTTGGTCCAGTTATTAGTAAGCAGGAAAAGGAACGGATAATCACATTGATTCAAACAGGTGTTGAAAGTGGTGCAAAGCTAGTTCTTGATGGAAG AAATATTGTGGTTGCAGGATATGAAAATGGGAACTTCATTGGTCCTACCATCTTATCGGATGTCACAGTCAACATGGAATGTTACAAGGAGGATATTTTT GGCCCAGTTCTTCTTTGTATGCAGGCTGATAGCATCGAAGAAGCCATAAACATTGTTAATGGAAATAAATATAGCAATGGAGCTTCTATATTTACAACAT CTGGCGTCGCTGCAAGGAAATTCCAGACTGAGGTTGAGGTTGGGCAGGTTGGGATAAATGTTCCTATCTCGGTTCCGCTGCCATTCTCCTCGTTTATTAG CGCAAAACCATCTTTTGCTGGAGATGTCAGCTTTGACGGAAAAGCTGGAATTCAGTTTTACACCCAAGTTAAAACAGTGACTCAACAATGGAGAGATTTA GTGAGTGACGATTCGTCATCTCACCAGTTGCCAAGCTCCTAG
AA sequence Show only first row Show all	>Potri.009G078700.1 pacid=42772639 polypeptide=Potri.009G078700.1.p locus=Potri.009G078700 ID=Potri.009G078700.1.v4.1 annot-version=v4.1 MTDIQSSSGSGLDEAQMQMQPPPPGTFVDREELIQHVGDFAVSQGYVVTIKQSKRERVVVLGCDRGGVYRNRKKADEETSAERKRRKRSGSRLTNCPFEA VGKKDDGLWVLTIKNGTHNHEPLKDITEHPSARRFSESEIVLIKEMTEAGLKPRQILKRLRQSNPELLSTPKHVYNVKAKLRQGNMTVRNFKSLRPEKSA GRDKHLSIAEPSWRQRYPMRVPNFIGGRLVNSQSFASIDVINPATQQVVSQVPLTTNEEFRAAVFAAKRAFPQWRDTPITTRQRIMFKFQELIRRDIDKL AMSITTEHGKTLKDAHGDVLRGLEVVEHACGLASLQIGEFVSNISSGIDTYSIREPLGVCAGICPFEFPAMIPLWIFPIAVTCGNTFILKPSEKDPGASV MLAELAMEAGLPNGVLNIVHGTNEIINGICDDDDIKAISFVGPNAVGAYVYARASAKGKRTQSNIGAKNHAVIMPDASVGATINALVAAGFGGAGQKCMA LNMAVFVGGLGPWEEKLVEHAKALKVTSGTEPDAELGPVISKQEKERIITLIQTGVESGAKLVLDGRNIVVAGYENGNFIGPTILSDVTVNMECYKEDIF GPVLLCMQADSIEEAINIVNGNKYSNGASIFTTSGVAARKFQTEVEVGQVGINVPISVPLPFSSFISAKPSFAGDVSFDGKAGIQFYTQVKTVTQQWRDL VSDDSSSHQLPSS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G14170		ALDH6B2	aldehyde dehydrogenase 6B2 (....		Potri.009G078700 [exp]	0	1
AT5G44800		PKR1, CHR4, MI-...	PICKLE RELATED 1, chromatin re...		Potri.010G172100 [exp]	4.35	0.8004
AT5G42320			Zn-dependent exopeptidases sup...		Potri.002G010800 [exp]	5.00	0.7227
AT5G02410		ALG10	homolog of yeast ALG10, DIE2/A...		Potri.006G084800 [exp]	5.47	0.7479
AT4G16110	GARP	ARR2	response regulator 2 (.1)		Potri.014G077200 [exp]	6.00	0.7760
AT1G31360		MED34, ATRECQ2,...	ARABIDOPSIS THALIANA RECQ 2, ...		Potri.003G104300 [exp]	7.41	0.7833
AT3G18990	B3	REM39, VRN1	REDUCED VERNALIZATION RESPONSE...		Potri.014G036800 [exp]	8.12	0.7975
AT1G01760			adenosine deaminases;RNA bindi...		Potri.014G081400 [exp]	9.94	0.7151
AT5G60690	HD	IFL1, REV	REVOLUTA, INTERFASCICULAR FIBE...		Potri.004G211300 [exp]	12.64	0.7390	Pt-HB1.7
AT3G60830		ATARP7	actin-related protein 7 (.1)		Potri.001G265200 [exp]	13.85	0.6680	ARP7.1,ARP903
AT2G14170		ALDH6B2	aldehyde dehydrogenase 6B2 (....		Potri.005G147700 [exp]	15.09	0.7853

Compare expression of checked genes

Potri.009G078700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.