Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G18265 71 / 3e-14 Protein of unknown function, DUF593 (.1) AT5G16720 57 / 5e-09 Protein of unknown function, DUF593 (.1) AT1G70750 56 / 1e-08 Protein of unknown function, DUF593 (.1) AT1G18990 51 / 5e-07 Protein of unknown function, DUF593 (.1) AT4G13630 49 / 2e-06 Protein of unknown function, DUF593 (.1.2) AT1G04890 46 / 1e-05 Protein of unknown function, DUF593 (.1) AT1G74830 44 / 7e-05 Protein of unknown function, DUF593 (.1) AT4G13160 43 / 0.0001 Protein of unknown function, DUF593 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G132200 [exp] 49 / 3e-06 AT1G70750 288 / 1e-84 Protein of unknown function, DUF593 (.1) Potri.012G073400 [exp] 48 / 4e-06 AT1G74830 390 / 2e-129 Protein of unknown function, DUF593 (.1) Potri.018G103500 [exp] 47 / 6e-06 AT5G57830 169 / 5e-48 Protein of unknown function, DUF593 (.1) Potri.004G087600 [exp] 46 / 2e-05 AT5G16720 281 / 2e-82 Protein of unknown function, DUF593 (.1) Potri.006G199000 [exp] 46 / 2e-05 AT5G06560 523 / 0.0 Protein of unknown function, DUF593 (.1) Potri.002G242900 [exp] 45 / 3e-05 AT4G13630 187 / 3e-51 Protein of unknown function, DUF593 (.1.2) Potri.016G065200 [exp] 45 / 3e-05 AT5G06560 517 / 4e-180 Protein of unknown function, DUF593 (.1) Potri.010G109900 [exp] 45 / 3e-05 AT1G70750 277 / 2e-80 Protein of unknown function, DUF593 (.1) Potri.013G043400 [exp] 45 / 4e-05 AT1G08800 227 / 2e-61 Protein of unknown function, DUF593 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010755 [exp] 135 / 2e-38 AT5G16720 81 / 2e-17 Protein of unknown function, DUF593 (.1) Lus10035638 [exp] 128 / 8e-36 AT1G18265 72 / 6e-15 Protein of unknown function, DUF593 (.1) Lus10020457 [exp] 122 / 1e-32 AT1G18265 77 / 7e-16 Protein of unknown function, DUF593 (.1) Lus10007082 [exp] 109 / 6e-28 AT1G18265 78 / 2e-16 Protein of unknown function, DUF593 (.1) Lus10004050 [exp] 57 / 5e-09 AT5G16720 290 / 7e-87 Protein of unknown function, DUF593 (.1) Lus10002289 [exp] 55 / 3e-08 AT5G16720 293 / 6e-88 Protein of unknown function, DUF593 (.1) Lus10007129 [exp] 47 / 1e-05 AT4G13630 160 / 7e-42 Protein of unknown function, DUF593 (.1.2) Lus10012288 [exp] 47 / 1e-05 AT5G06560 464 / 2e-160 Protein of unknown function, DUF593 (.1) Lus10010774 [exp] 46 / 2e-05 AT5G57830 145 / 8e-40 Protein of unknown function, DUF593 (.1) Lus10016673 [exp] 46 / 2e-05 AT4G13630 237 / 6e-70 Protein of unknown function, DUF593 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04576 [poplar] [flax] Zein-binding Zein-binding
Representative CDS sequence Show only first row Show all	>Potri.009G078800.1 pacid=42772234 polypeptide=Potri.009G078800.1.p locus=Potri.009G078800 ID=Potri.009G078800.1.v4.1 annot-version=v4.1 ATGGATTGCGTATCATACTTGAAGGTTCTGACTCAAAACGGTGGATTCAAAGGTGGGTTTTTTGTGTTTAGGTATTTCTCGTCGGTTTTCAATTTTTTGT GGCTGTTTTTTATGTTTTGTTTAGGGTTGAGGTTTTTGCAGTTTACCTGGCATGGTAAGTCTCTGGTTCAGTTTCTATGTGGTTTTAGTGGGGAATCGAG TGATCCTAAAAATGGGTTTTGTTCAAAATTGGATTTTGATAAACTGTGTGATACAAAGATTCCGTCTTGCTTGGAGAATTCAAAAGCAAAAAATGAGGAC AGTTCAATGACGAGAAAAGAAGTTGTGAACGATGGTGTTCTTGACGATGATGATTGTGAAAGAGAATATAGTGTTGAAGACGAGGAATATGATGTGACGG CACTGAGGAGATTGGTCAAGATTGAGAGGCTGAGAGCAGATATGGCTTATGCAGAACTTGAAAAGGAGAGAATGGCTTCTGCATCAGCGGCTGATGAGGC TATGGCAATGATTTTAAGGCTTCAGAATGAAAAGAGTTCAACGGAGATCGAAGCCAAACAGTATCGCCAATTGGCAGAACAGAAACAAGAATTTCTTCAA GAAGTGATTGAATCATTGCAATGGGACATAATCAATCTCGAGCATGAAAGGAGTGAAATGGAGGAGAATTTGAGACTGTACAGAGAAAAGCTGAGGCAGT ATGTGAAGAGTGATGAAGTGGATCAATTTGAAGCGTCTGGTGCAAGGATGAACTATCTTCGTTCCGCCATGGAAGATGGTATTGAAGATGTGCCGAATCT ATCTCTTGACAACATGGACTCTTCAGTTCTCTGA
AA sequence Show only first row Show all	>Potri.009G078800.1 pacid=42772234 polypeptide=Potri.009G078800.1.p locus=Potri.009G078800 ID=Potri.009G078800.1.v4.1 annot-version=v4.1 MDCVSYLKVLTQNGGFKGGFFVFRYFSSVFNFLWLFFMFCLGLRFLQFTWHGKSLVQFLCGFSGESSDPKNGFCSKLDFDKLCDTKIPSCLENSKAKNED SSMTRKEVVNDGVLDDDDCEREYSVEDEEYDVTALRRLVKIERLRADMAYAELEKERMASASAADEAMAMILRLQNEKSSTEIEAKQYRQLAEQKQEFLQ EVIESLQWDIINLEHERSEMEENLRLYREKLRQYVKSDEVDQFEASGARMNYLRSAMEDGIEDVPNLSLDNMDSSVL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G18265			Protein of unknown function, D...		Potri.009G078800 [exp]	0	1
AT5G03560			Tetratricopeptide repeat (TPR)...		Potri.016G096900 [exp]	1.00	0.9506
					Potri.003G054001 [exp]	1.41	0.9434
AT2G20740			Tetraspanin family protein (.1...		Potri.006G241400 [exp]	1.73	0.9373
AT1G48210			Protein kinase superfamily pro...		Potri.010G001500 [exp]	4.47	0.9296
AT3G20970		ATNFU2, NFU4	ARABIDOPSIS THALIANA NFU DOMAI...		Potri.008G022000 [exp]	5.19	0.9127
AT3G01470	HD	HD-ZIP-1, HAT5,...	HOMEODOMAIN PROTEIN FROM ARABI...		Potri.012G070900 [exp]	11.31	0.8999
AT5G57360		LKP1, FKL2, ADO...	ZEITLUPE, LOV KELCH PROTEIN 1,...		Potri.018G090800 [exp]	13.03	0.9126
AT4G00550		DGD2	digalactosyl diacylglycerol de...		Potri.014G079400 [exp]	14.14	0.9038	Pt-DGD2.1
AT5G55210			unknown protein		Potri.001G356400 [exp]	14.73	0.9164
AT3G51480		ATGLR3.6	glutamate receptor 3.6 (.1)		Potri.005G102700 [exp]	15.09	0.9096	Pt-GLR3.5

Compare expression of checked genes

Potri.009G078800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.