Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G16290 52 / 2e-07 F-box family protein with a domain of unknown function (DUF295) (.1) AT5G24040 51 / 2e-07 Protein of unknown function (DUF295) (.1), Protein of unknown function (DUF295) (.2) AT1G44080 47 / 7e-06 F-box family protein with a domain of unknown function (DUF295) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G014500 [exp] 55 / 2e-08 AT2G17030 130 / 9e-34 F-box family protein with a domain of unknown function (DUF295) (.1) Potri.009G140000 [exp] 53 / 9e-08 AT2G17030 370 / 6e-126 F-box family protein with a domain of unknown function (DUF295) (.1) Potri.005G105200 [exp] 50 / 8e-07 AT1G65770 132 / 4e-35 ascorbic acid mannose pathway regulator 1 (.1) Potri.004G179685 [exp] 49 / 3e-06 AT2G17030 360 / 2e-121 F-box family protein with a domain of unknown function (DUF295) (.1) Potri.005G105000 [exp] 45 / 4e-05 AT1G65770 124 / 8e-33 ascorbic acid mannose pathway regulator 1 (.1) Potri.002G015700 [exp] 41 / 0.0007 AT5G60060 63 / 5e-11 Protein of unknown function (DUF295) (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007081 [exp] 148 / 1e-41 AT5G55150 45 / 6e-05 Protein of unknown function (DUF295) (.1) Lus10020455 [exp] 147 / 4e-41 ND 42 / 8e-04 Lus10007080 [exp] 127 / 1e-35 ND / Lus10007078 [exp] 103 / 6e-27 ND / Lus10024904 [exp] 60 / 1e-09 AT1G57790 97 / 2e-21 F-box family protein (.1) Lus10019203 [exp] 53 / 5e-08 AT2G24250 48 / 2e-06 Protein of unknown function (DUF295) (.1), Protein of unknown function (DUF295) (.2) Lus10041838 [exp] 45 / 3e-05 AT1G65770 147 / 2e-40 ascorbic acid mannose pathway regulator 1 (.1) Lus10023984 [exp] 41 / 0.0007 AT2G17030 336 / 2e-112 F-box family protein with a domain of unknown function (DUF295) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03478 [poplar] [flax] DUF295 Protein of unknown function (DUF295)
Representative CDS sequence Show only first row Show all	>Potri.009G078900.1 pacid=42772414 polypeptide=Potri.009G078900.1.p locus=Potri.009G078900 ID=Potri.009G078900.1.v4.1 annot-version=v4.1 ATGACAACAAAGGTGCTGCAAAGCAACCTCACATCTTCAACATTGCATTTAAGAAGTTGGGATTTTGGTATTGGAAAAGGTGCTGGGATTTTGATCGATA TCCTAAGTTACATTTTCTGGGATCTTCCCATATATGGTATATTAGTGGCTAAAGGTCATGATGTGTGGAATCCAGTTGACGGTTCACGGTGGCGTCTCCC ACCATGGGATTCCAGGAATCCATTTATATGTGCGTTTTTGTCTGCATCACCATGGCAATATACTCTGAAGATGGAATGTTTTGTTCTAGTTTTGACAGGA ATCAGTCATCCAGCTTTTGTTTTCTACCAAATCTGTGGGGGCTGGAAAAAGCATGCATGGATAAAAGAAGACTGCACTATTGTTGATCCCAATTGTTCGA ACCCGTCCGAACGACGTCATTTTATGCGATTTACGAATGCCATTGGGTTCAAGGGAAAGTTCTACGCTTTGAGTTTACAAGGAAGTACTCTTGCAGTTAT AGAAAATATTGATTCTCATTTGAGGATTACAGCTTTGGGTAAGAAAAGAGCCATCCCTTCTGACTCATCATTGCATTTTCGAGAATTAATGGTCGAATCC GGTGAAGAAGTCTTGCTAGTTTTTCTTATCTCTAAAGCATCTTCCAACATTGTGGATTCGGTAGAAGTTTACCAGCTTGATGTTGACAAACTCACGTGGA ATAAAATGGAGAGCCTCGGAGATCGAACATTGTTTTTGGGCTCTTACTGCTGTATGTCTGTGTCCGCAAGCAAAGTCGGATGCAAGAGAAATTGTGTCTA CCATACTCATCGCTCTGGTGATTATGGCTGGTGGGTGTATGACTTGGACAAGGCAACCATCTCTCCCAGTTAG
AA sequence Show only first row Show all	>Potri.009G078900.1 pacid=42772414 polypeptide=Potri.009G078900.1.p locus=Potri.009G078900 ID=Potri.009G078900.1.v4.1 annot-version=v4.1 MTTKVLQSNLTSSTLHLRSWDFGIGKGAGILIDILSYIFWDLPIYGILVAKGHDVWNPVDGSRWRLPPWDSRNPFICAFLSASPWQYTLKMECFVLVLTG ISHPAFVFYQICGGWKKHAWIKEDCTIVDPNCSNPSERRHFMRFTNAIGFKGKFYALSLQGSTLAVIENIDSHLRITALGKKRAIPSDSSLHFRELMVES GEEVLLVFLISKASSNIVDSVEVYQLDVDKLTWNKMESLGDRTLFLGSYCCMSVSASKVGCKRNCVYHTHRSGDYGWWVYDLDKATISPS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G24040			Protein of unknown function (D...		Potri.009G078900 [exp]	0	1
AT5G24590	NAC	TIP, ANAC091	Arabidopsis NAC domain contain...		Potri.019G099800 [exp]	2.64	0.7316
AT5G40690			unknown protein		Potri.001G338100 [exp]	18.70	0.6643
AT3G52590		HAP4, ERD16, UB...	HAPLESS 4, EARLY-RESPONSIVE TO...		Potri.004G194000 [exp]	22.36	0.6973
AT1G02460			Pectin lyase-like superfamily ...		Potri.002G190600 [exp]	41.42	0.6415
AT5G44120		ATCRA1, CRU1, C...	CRUCIFERINA, RmlC-like cupins ...		Potri.019G004200 [exp]	44.11	0.6394	QLEG.4
					Potri.019G017739 [exp]	48.49	0.6387
AT4G10790			UBX domain-containing protein ...		Potri.003G145200 [exp]	63.49	0.6236
AT5G44120		ATCRA1, CRU1, C...	CRUCIFERINA, RmlC-like cupins ...		Potri.019G004300 [exp]	80.14	0.5789
					Potri.001G093650 [exp]	89.16	0.5733
AT4G29000	CPP		Tesmin/TSO1-like CXC domain-co...		Potri.003G052150 [exp]	106.88	0.5329

Compare expression of checked genes

Potri.009G078900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.