Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G37940 293 / 3e-101 MADS AGL21 AGAMOUS-like 21 (.1) AT2G14210 292 / 1e-100 MADS AGL44, ANR1 ARABIDOPSIS NITRATE REGULATED 1, AGAMOUS-like 44 (.1) AT3G57230 281 / 2e-96 MADS AGL16 AGAMOUS-like 16 (.1.2) AT2G22630 278 / 4e-95 MADS AGL17 AGAMOUS-like 17 (.1) AT4G18960 169 / 7e-52 MADS AG AGAMOUS, K-box region and MADS-box transcription factor family protein (.1.2) AT4G09960 162 / 9e-50 MADS AGL11, STK SEEDSTICK, AGAMOUS-like 11, K-box region and MADS-box transcription factor family protein (.1.2.3.4) AT1G26310 156 / 5e-47 MADS CAL1, AGL10, CAL CAULIFLOWER, AGAMOUS-like 10, K-box region and MADS-box transcription factor family protein (.1) AT3G58780 155 / 1e-46 MADS AGL1, SHP1 SHATTERPROOF 1, AGAMOUS-like 1, K-box region and MADS-box transcription factor family protein (.1.2.3) AT2G42830 154 / 2e-46 MADS AGL5, SHP2 SHATTERPROOF 2, AGAMOUS-like 5, K-box region and MADS-box transcription factor family protein (.1.2) AT1G69120 152 / 2e-45 MADS AGL7, AP1 APETALA1, AGAMOUS-like 7, K-box region and MADS-box transcription factor family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G284600 [exp] 395 / 2e-141 AT4G37940 272 / 7e-93 AGAMOUS-like 21 (.1) Potri.001G284301 [exp] 395 / 2e-141 AT4G37940 272 / 7e-93 AGAMOUS-like 21 (.1) Potri.005G150501 [exp] 325 / 3e-113 AT3G57230 322 / 8e-112 AGAMOUS-like 16 (.1.2) Potri.002G109601 [exp] 315 / 1e-109 AT3G57230 299 / 1e-103 AGAMOUS-like 16 (.1.2) Potri.013G104900 [exp] 163 / 4e-50 AT4G09960 330 / 3e-116 SEEDSTICK, AGAMOUS-like 11, K-box region and MADS-box transcription factor family protein (.1.2.3.4) Potri.019G077200 [exp] 157 / 8e-48 AT4G09960 274 / 5e-94 SEEDSTICK, AGAMOUS-like 11, K-box region and MADS-box transcription factor family protein (.1.2.3.4) Potri.011G075800 [exp] 152 / 1e-45 AT4G18960 325 / 2e-113 AGAMOUS, K-box region and MADS-box transcription factor family protein (.1.2) Potri.004G064300 [exp] 151 / 2e-45 AT4G18960 313 / 8e-109 AGAMOUS, K-box region and MADS-box transcription factor family protein (.1.2) Potri.007G010800 [exp] 151 / 3e-45 AT2G22540 329 / 3e-115 SHORT VEGETATIVE PHASE, AGAMOUS-like 22, K-box region and MADS-box transcription factor family protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007100 [exp] 260 / 2e-88 AT3G57230 226 / 4e-75 AGAMOUS-like 16 (.1.2) Lus10020477 [exp] 210 / 1e-69 AT4G37940 195 / 4e-64 AGAMOUS-like 21 (.1) Lus10028215 [exp] 169 / 6e-54 AT3G57230 164 / 4e-52 AGAMOUS-like 16 (.1.2) Lus10005302 [exp] 160 / 2e-48 AT4G09960 330 / 2e-115 SEEDSTICK, AGAMOUS-like 11, K-box region and MADS-box transcription factor family protein (.1.2.3.4) Lus10008264 [exp] 158 / 2e-47 AT4G09960 328 / 3e-114 SEEDSTICK, AGAMOUS-like 11, K-box region and MADS-box transcription factor family protein (.1.2.3.4) Lus10009481 [exp] 154 / 8e-46 AT4G09960 274 / 1e-92 SEEDSTICK, AGAMOUS-like 11, K-box region and MADS-box transcription factor family protein (.1.2.3.4) Lus10042919 [exp] 148 / 3e-45 AT3G57230 162 / 6e-51 AGAMOUS-like 16 (.1.2) Lus10034662 [exp] 149 / 3e-44 AT5G60910 284 / 3e-97 FRUITFULL, AGAMOUS-like 8 (.1.2) Lus10021140 [exp] 149 / 3e-44 AT5G60910 291 / 1e-99 FRUITFULL, AGAMOUS-like 8 (.1.2) Lus10007983 [exp] 149 / 3e-44 AT5G60910 298 / 3e-102 FRUITFULL, AGAMOUS-like 8 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00319 [poplar] [flax] SRF-TF SRF-type transcription factor (DNA-binding and dimerisation domain)
Representative CDS sequence Show only first row Show all	>Potri.009G079000.3 pacid=42772523 polypeptide=Potri.009G079000.3.p locus=Potri.009G079000 ID=Potri.009G079000.3.v4.1 annot-version=v4.1 ATGGGGAGAGGAAAGATTGTGATACGCAGGATCGACAATTCGACGAGTAGGCAAGTAACTTTCTCCAAAAGAAGAAATGGGTTGCTCAAGAAGGCTAAGG AGCTATCAATCCTTTGTGATGCAGAAATTGGAGTTATTATCTTCTCCAGCACAGGCAAACTCTATGACTATGCAAACACTAGTATGAAGTCCATCATCGA TCGCTACAACAAACAGAAGGAGGAGCAACAGCAGCTGTTAAATCCTGCTTCGGAAGTCAAGTTTTGGCAAAGGGAGGCAGCAAGCTTGAGGAAGGAACTG CAATACTTGCAAGAATGCCATCGGCAATTGATGGGAGAAGAACTGTCTGGTTTGAGCGCCAAGGATCTACAGAATCTAGAAAACCAGCTGGAGATGAGTT TGAAAGGAGTTCGAATGAAAAAGGAACAAATTTTAACTGATGAAATTAAAGACCTGAACAGAAAGGGTAATCTAATTTATCAAGAAAACCTTGAGCTGCA CAAGAAGGTTAAACTCGTCAGTCAAGAAAATTCAGAACTGCGTGAGGTTTATGGAAGACAGAATGTGGATGAAGCAAACAGGGCTTCCCAGGCCCCTTGC ACAGTAGGAAATGGATATGACTCGCATGCCCCAATCCAGCTCCAATTGAGCCAGCCACATCCTCATAACATCGAGGCACCAGGAAAATCAATGAAACTGG GGCTGCAACTTCAATAG
AA sequence Show only first row Show all	>Potri.009G079000.3 pacid=42772523 polypeptide=Potri.009G079000.3.p locus=Potri.009G079000 ID=Potri.009G079000.3.v4.1 annot-version=v4.1 MGRGKIVIRRIDNSTSRQVTFSKRRNGLLKKAKELSILCDAEIGVIIFSSTGKLYDYANTSMKSIIDRYNKQKEEQQQLLNPASEVKFWQREAASLRKEL QYLQECHRQLMGEELSGLSAKDLQNLENQLEMSLKGVRMKKEQILTDEIKDLNRKGNLIYQENLELHKKVKLVSQENSELREVYGRQNVDEANRASQAPC TVGNGYDSHAPIQLQLSQPHPHNIEAPGKSMKLGLQLQ

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G37940	MADS	AGL21	AGAMOUS-like 21 (.1)		Potri.009G079000 [exp]	0	1
AT3G15220			Protein kinase superfamily pro...		Potri.001G397600 [exp]	6.92	0.8740
AT3G50950		ZAR1	HOPZ-ACTIVATED RESISTANCE 1 (....		Potri.019G125400 [exp]	7.74	0.8235
AT5G63460			SAP domain-containing protein ...		Potri.015G094600 [exp]	8.00	0.8006
AT4G19490		ATVPS54	ARABIDOPSIS THALIANA VPS54 HOM...		Potri.001G442900 [exp]	8.66	0.8453
					Potri.004G093250 [exp]	9.79	0.8726
AT2G01570	GRAS	RGA1	REPRESSOR OF GA1-3 1, REPRESSO...		Potri.017G018801 [exp]	10.00	0.8771
AT4G24520		AR1, ATR1	ARABIDOPSIS CYTOCHROME REDUCTA...		Potri.002G106566 [exp]	18.33	0.8690
AT2G28580			Plant protein of unknown funct...		Potri.007G132300 [exp]	19.10	0.8713
AT1G54850			HSP20-like chaperones superfam...		Potri.013G024900 [exp]	24.97	0.8464
AT1G53440			Leucine-rich repeat transmembr...		Potri.011G072766 [exp]	25.90	0.8010

Compare expression of checked genes

Potri.009G079000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.