Plant FIBer expression Database

Potri.009G079600 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G04305 587 / 0 Magnesium transporter CorA-like family protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.001G285300
[exp]
790 / 0 AT2G04305 590 / 0.0 Magnesium transporter CorA-like family protein (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10007098
[exp]
624 / 0 AT2G04305 645 / 0.0 Magnesium transporter CorA-like family protein (.1)
Lus10020472
[exp]
621 / 0 AT2G04305 638 / 0.0 Magnesium transporter CorA-like family protein (.1)
Lus10035643
[exp]
558 / 0 AT2G04305 606 / 0.0 Magnesium transporter CorA-like family protein (.1)
Lus10010751
[exp]
341 / 3e-116 AT2G04305 393 / 3e-137 Magnesium transporter CorA-like family protein (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF01544 CorA CorA-like Mg2+ transporter protein
Representative CDS sequence
>Potri.009G079600.1 pacid=42771568 polypeptide=Potri.009G079600.1.p locus=Potri.009G079600 ID=Potri.009G079600.1.v4.1 annot-version=v4.1
ATGCACATAGACAGGGAAGAGCCTGTCGGGAACGTGGAGGCAGAGGAGATGGACGGAGACCTCAAGGAGGATACTCCTCTCGGGGACATCCCTCTCTACC
GCCACCGTTTTTTGGGTATGGTGAGACAGAAAGCCTATATATTTGACGGTGATGGAAATTATTACAATAAAGATTGGGATTTTGCTGAACCTAAAGAAAA
CGAGTTTTGTTGGTACCATGTAGAGCTTCCAAAAATTAACCAGAAGCTTCCGCTTTTCGCACAAAGCCTCATTGACATTCTCTGCCCTCCTTTGAAACTC
CAAGATATTCTGTCACTAGTTAGCAATGGGCCCCTTTGTAGTCATGTTAATGGAGCACTTGTGTTCAGAGTTAATTCTCCTGGTCCTCCAACTAGCAATT
ATACATTTAGATTAGCTGCTAGAGTTACTGAGAATTCGGTGATTACCGTGTCACTAGGACGGGTTCCAAGATTGGGTTTCTCACCAACGAGTAAATCCCT
TCTCTCTGAGATTCCTAGTGTGGAGACTTATTCAAGTGGTGGGCCGCCCTCACATAATGGAGGGGATCAAAAGGAAGGAAGTGGGTTTGTGATTCGAGAG
CATGTTCTTGAGTTCTTATTGACAATGAACCACTCAGAGGAGGCTGATAATCCCGTGCCGGAATCTGTCTCAAATCTTGTTGTTCACATCATTGACACGC
ATGTCGATCACCTTCAAGATGTTACCACCAAACTCGAGATGGAGCTTGACTCTGTGGAGCTTGAATTAGACAAAGGAGGTTTTGCATTAAAGAAACAGAT
GCTTGATGATAGAAGATTTCCTAATATGCATCTTAATCTTCAACGTATATTGCAGGTGATTGCACATGGGGAGCAAGTATTTCCTCGAGTAAAAGAAAAA
TGTTCTTCAAAAAAATGGTTTTGCAGTGAAGATATTAACTCCCTAGAAGAGTTAATTGGAAGGCTAAGGAGGCTAAAAGAGAGTGTGGGGTTTATAGCAA
ATCGTGTCACGGCAATTCAGGCAGGTTTGGATAGCTGGCAGGCTGAGCAAATAAACAAGAAACTGTACTATCTATCGTTCCTTTCAATTATATTCCTCCC
ATTGTCAATCATCACTGGAGTCTTTGGCATGAATGTGGGAGGAGTTCCATGGACAGAGCAAAAGAACCCAAAGGAGAAAGATGGTTTCCGCAATGTGATG
TTTCTCTGCGTGGGAATGCTAGTTCTCGTTCTTCTATGCTTCCTTTTCCCAGCTCTTTACACCCATATAGCTGCCTGGCGACGAAGGATGGCTTTGAAAA
GAAGCTGGTCTCTCAATAGGAAATCTTTTCTCAAGAGAACTGTTCCAGTTAAAGAAAGAGGTGGTTATATTCGCCTTTGA
AA sequence
>Potri.009G079600.1 pacid=42771568 polypeptide=Potri.009G079600.1.p locus=Potri.009G079600 ID=Potri.009G079600.1.v4.1 annot-version=v4.1
MHIDREEPVGNVEAEEMDGDLKEDTPLGDIPLYRHRFLGMVRQKAYIFDGDGNYYNKDWDFAEPKENEFCWYHVELPKINQKLPLFAQSLIDILCPPLKL
QDILSLVSNGPLCSHVNGALVFRVNSPGPPTSNYTFRLAARVTENSVITVSLGRVPRLGFSPTSKSLLSEIPSVETYSSGGPPSHNGGDQKEGSGFVIRE
HVLEFLLTMNHSEEADNPVPESVSNLVVHIIDTHVDHLQDVTTKLEMELDSVELELDKGGFALKKQMLDDRRFPNMHLNLQRILQVIAHGEQVFPRVKEK
CSSKKWFCSEDINSLEELIGRLRRLKESVGFIANRVTAIQAGLDSWQAEQINKKLYYLSFLSIIFLPLSIITGVFGMNVGGVPWTEQKNPKEKDGFRNVM
FLCVGMLVLVLLCFLFPALYTHIAAWRRRMALKRSWSLNRKSFLKRTVPVKERGGYIRL

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT2G04305 Magnesium transporter CorA-lik... Potri.009G079600
[exp]
0 1
AT2G16530 3-oxo-5-alpha-steroid 4-dehydr... Potri.009G125200
[exp]
2.64 0.6670
AT3G05010 Protein of unknown function, t... Potri.013G031200
[exp]
17.20 0.6659
Potri.008G177350
[exp]
21.72 0.6130
AT5G01650 Tautomerase/MIF superfamily pr... Potri.006G104600
[exp]
25.47 0.6560
AT3G27020 YSL6 YELLOW STRIPE like 6 (.1) Potri.001G327300
[exp]
34.98 0.6187
AT3G19553 Amino acid permease family pro... Potri.009G090300
[exp]
38.96 0.6102 PtrLAT7
AT4G33650 APEM1, DRP3A, A... ABERRANT PEROXISOME MORPHOLOGY... Potri.017G041800
[exp]
40.80 0.6211 Pt-ADL2.1
AT3G53230 ATPase, AAA-type, CDC48 protei... Potri.016G091600
[exp]
47.24 0.6271 Pt-CDC48.2
AT5G19010 ATMPK16 mitogen-activated protein kina... Potri.008G200800
[exp]
54.90 0.5776 ATMPK16.2
AT2G25740 ATP-dependent protease La (LON... Potri.018G046700
[exp]
62.04 0.6191

Potri.009G079600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.