Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G64420 959 / 0 DNA polymerase V family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G285600 [exp] 1431 / 0 AT5G64420 952 / 0.0 DNA polymerase V family (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025659 [exp] 984 / 0 AT5G64420 1206 / 0.0 DNA polymerase V family (.1) Lus10041274 [exp] 964 / 0 AT5G64420 1208 / 0.0 DNA polymerase V family (.1) Lus10037435 [exp] 557 / 8e-177 AT5G64420 831 / 0.0 DNA polymerase V family (.1) Lus10018176 [exp] 424 / 2e-130 AT5G64420 351 / 3e-104 DNA polymerase V family (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04931 [poplar] [flax] DNA_pol_phi DNA polymerase phi
Representative CDS sequence Show only first row Show all	>Potri.009G079900.4 pacid=42772751 polypeptide=Potri.009G079900.4.p locus=Potri.009G079900 ID=Potri.009G079900.4.v4.1 annot-version=v4.1 ATGGGAAGCAAGAAAAGAAGCCCCAATTCAGTAGCGGAAGTTGAGGATTTAGATAATACAGACACAAATATCGAGAATGCAAACTTAGAGGATACGAATA ATGAGAATGCAAGTTCAATTTCAAGTAGAAAGAAAATGAAGAAAGATAAGAATAAAGAGACCGAAGCCCCGGATGAGGATGCTTCCAAAGCAGGCCTTTC TAACATTCCTAGCTCAATGAAACCCATGGAAAGACGGAAGAAAAGGAAAGCATTGGATAAAAAGCGGCTACATGCTGCTTCAGAGAGTAAGGAAGTGAAG ACTAAAAAAATGGATGTTGATTCAAAGGTTACCGAAAGTAAAGAGCACATGGGAGCTTCCTCGAGTGGGACGTTGCCGAAGTTTCATATTGGTGTCTTTA AGGACCTGGCATCGGTGGATGTATCTGTGAGAGAAGGTGCAGTGGAGAGATTGGTCACGGAGCTGCAAGAGGTTCAGAAGGCATATGAAGTTACGGAGAA TAAGGAGGTGGTTGAAGGTGGATTGAAACTGGAAGCGGAGAAGGATGATGGGTTGAATGATTGTGCACCTTCTGTGAGATACGCTGTGCGTAGGCTTGTT CGTGGTGCTTCTTCATCAAGAGAGTGTGCAAGGCAAGGATTTGCACTGGGCTTGACAGTGTTAGTTGATACAGTTCCTAGTGTCAAAGTGGATTCAGTGC TGAAACTAATAGTTGATTTGTTAGAAGTTTCTTCATCAATGAAGGGTCAGGATATAAGAGATTGCCTTTTAGGTCGGTTATTTGCTTATGGTGCTCTTGC CCTATCAAGAAGACTGACTGAAGAGTGGATTTCTGATCATAACACCCTCATCATTAAAGAATTCACCGATGTGCTTATCTCCCTTGCAGCAAAAAAACGA TATCTGCAAGAGCCTGCTGTTGCAATTATATTAGAATTGGTTGAAAAGTTGCCAACCGAGGCCGTGCTGAATCACATTCTTGAAGCTCCAAGACTGCGTG AGTGGTTTGAAGGTGGTATTGATGCCGGAAATCCTGATGCCGGAAATCCTGATGCATTGCTTTTAGCTTTGAGAATTCGGGAGAAAATTTCCATTGATAG TGAAATGTTTGGAAATTTTTTGCCACATCCGTTCAGCCCTAGTAGACTTTTTGTGCCTGGTCATTTGTCCTCTATTATTAACTGCTTGAAGGAATCAACT TTCTGTCAGCCTAGAGTTCATGGTGTATGGCCTGTTCTGGTAAATATCCTCTTACCTGATACTGTTATGCAAGCTGAAGATGTGGTGTCAGCTTCTAATT CTCTAAAAAAGCACAAAAAAAGTCGCAAGTCTAGTTCATCTGAAGAAGAAATTGCCAGGAGTGTTCGGTGTTTCTGTGAAGTTATTATCGAAGGCTCCCT TCTTCTTTCTTCGCATGATCGCAAGCACCTGGCATTTGATATTCTGCTTCTCCTTCTCCCAAGGCTCCCCGCATCTTTCATTCCATATGTTCTCTCTCAC AAAATTGTGCAATGCATGGTGGATGTACTTTCGACAAAGGACTCTTGGCTGTATAAAGTTGCTCAGCATTTTCTCAAGGAGCTGTCAGATTGGGTTGGAA ATGATGATGTCAGAAGAGTTGCTGTTATAGTGGCTTTACAGAGACACAGCAATGCAAGATTTGATGGCATCACAAAAACAAAAACAGTTAAAGCTTTGGT GACAGAGTTTAAAACTGAATCTGGTTGCATGTTGTTTATTCAGAATTTAATGAACATGTTTGTGGATGAAGGAAATGCTTCAGAAGAACCGTCAGACCAG AGTCAGACTACTGATGACAATTCAGAGATGGGTTCAGTCGAGGATAAGGATTCAAATGGTGCAACGGCAAATTCTGATTTCTTGAAGACTTGGGTGGTGG AATCCCTTCCAATTATTTTGAAACATTTGAAGCTGGAGCCAGAAGCAAGGTTTGGGGTGCAGAAGGAAATTTTGAAGTTTCTAGCTGTTCAAGGTCTGTT CTCTGCATCTCTTGGCTCTGAAGTGACATCTTTTGAATTACAGGAGAAATTTAAGTGGCCAAAGGCGCCTACCTCGAGTGCTATTTGCAGAATGTGCATT GAGCAGATCCAATCACTGCTTGCAAATGCTCAAAAGATAGAGGGGTTGCGTTCTTTGTCTAGTGGCCTGGAGCACAGTGATCTTGGGTCTTACTTCATGC GTTTTCTCAGTACACTACGAAACATTCCTTCGGTTTCTCTTTTTCGATCTTTGAGTGATGACGATGAAAAGGCTTTTGAAAAATTGCAAGAAATGGAAAC TAGGCTTTCCAGAGAGGAAAAAAATTGTGTGATTGGTGCTGAAGCAAATAAATTGCATGCAATGAGGTTCTTGCTGATCCAGTTGCTGCTTCAAGTACTC CTTCGACCTGGAGAATTCTCAGAAGCTGCATCTGAACTTGTTATATGTTGTAAGAAAGCTTTTGCAGCTTCTGATCTTCTTGACTCAGGAGAAGAGGAGT TGGATAATGATGCAGATCCTAAGTTAATGGATGTCCTTGTGGATACATTCCTTTCATTGTTACCTCAGTCATCAGCTCCCTTGCGCTCTGCTATTGAGCA GGTTTTTAAGTACTTCTGTAATGATGTGACCAACGATGGACTTCTTCGGATGTTGCGTGTCATTAAGAAAGATTTGAAGCCACCTAGACATCGGGAAGAA GGTAGAGATGATGGAGATGATGACGATGAAGATTTTCTTGGTATTGAAGAAGTAGAAGAAGGAGAAGGAGAAGGAGAAGAAGAAATGGATGAAGCTGAGA CAGGTGAAACAGGTGAGGATGAAGAACAGACTGATGACTCTGAGGCAGTGACTGAGGTTGAAGAAGCTGGCAAAGAGCTGTCTGATGATTCTGATGGAGG AATGGATGATGATGCAATGTTCCGGATGGACGCTTATCTTGCCCAGATTTTTAAAGACAGAAAGAATCAGGCTGGAGGTGAAACCGCCCAATCCCAGCTT GTTCTGTTCAAACTTCGTGTCCTTTCATTGCTGGAGGTTTACCTACATGAAAATCCAGCTGAGCCTGAGGTTCTGATGGTGTACTTGAACTTGGCTCGGG CATTCGTTAACCCTCAGACTGCAGAAATCAGCGAGCAGCTTGGACAGCGAATATGGGGAATTTTGCAGAAGAAGATATTGAAAGCAAAGGACTTCCCAAG GGGTGATGCTGTGCAACTACCTACTCTTGAATCTTTGTTGGAAAAGAACTTAAAGTTGGCATCAAAGCCATTAAAGAAAAAGAAATCTGCTGGTAATTTA TCCAAGAAAAAACAGTTGGCCATGTGGAAGCGACACAAAATGATTGTTTCCCTTGCTCAGGATTCAACCTTTTGGATTCTGAAAATTATTGGTGCCAGAA ATTTTCCGGAGTGTGAACTACAGGGGGTTATTGATATTTTCAAGGGTGAACTGGCGCGATATTTTGAGAGTAAGACATCTCAAATAAAATCTGATTTTTT GACAGAAATATTTCGAAGAAGGCCATGGATCGGGCACCATCTCTTTGGTTTCCTTTTGGAGAAATGTAGCAGGGCAAAGTTGGAGTTTCGTCGAGTTGAA GCACTTGATCTAGTAATAGAAATATTGAAGTCAATGGTTTCTTCTGGTAATGATGAAAGTAATCGCAATGCATCAAAGAAAGTCTTGAAAAATCATTTGC AAAAACTCAGTCATCTGATAAAGGAATTGGCAACAAATATGCCAGAAAAGCCATCAAGGCGGGCTGAAGCACGCAAGTTTTGTGGTAAGGTCTTCCGGTA TGTGTCAACATATGACCTGACCAAATCATTTCTTAAATATCTAGCCCCAGAAGCTGAAGCTGCTTGTGAATCTCAACTTGGAGAGCTGTATCTCAATTTC AAGAAGATCGAGAGATAA
AA sequence Show only first row Show all	>Potri.009G079900.4 pacid=42772751 polypeptide=Potri.009G079900.4.p locus=Potri.009G079900 ID=Potri.009G079900.4.v4.1 annot-version=v4.1 MGSKKRSPNSVAEVEDLDNTDTNIENANLEDTNNENASSISSRKKMKKDKNKETEAPDEDASKAGLSNIPSSMKPMERRKKRKALDKKRLHAASESKEVK TKKMDVDSKVTESKEHMGASSSGTLPKFHIGVFKDLASVDVSVREGAVERLVTELQEVQKAYEVTENKEVVEGGLKLEAEKDDGLNDCAPSVRYAVRRLV RGASSSRECARQGFALGLTVLVDTVPSVKVDSVLKLIVDLLEVSSSMKGQDIRDCLLGRLFAYGALALSRRLTEEWISDHNTLIIKEFTDVLISLAAKKR YLQEPAVAIILELVEKLPTEAVLNHILEAPRLREWFEGGIDAGNPDAGNPDALLLALRIREKISIDSEMFGNFLPHPFSPSRLFVPGHLSSIINCLKEST FCQPRVHGVWPVLVNILLPDTVMQAEDVVSASNSLKKHKKSRKSSSSEEEIARSVRCFCEVIIEGSLLLSSHDRKHLAFDILLLLLPRLPASFIPYVLSH KIVQCMVDVLSTKDSWLYKVAQHFLKELSDWVGNDDVRRVAVIVALQRHSNARFDGITKTKTVKALVTEFKTESGCMLFIQNLMNMFVDEGNASEEPSDQ SQTTDDNSEMGSVEDKDSNGATANSDFLKTWVVESLPIILKHLKLEPEARFGVQKEILKFLAVQGLFSASLGSEVTSFELQEKFKWPKAPTSSAICRMCI EQIQSLLANAQKIEGLRSLSSGLEHSDLGSYFMRFLSTLRNIPSVSLFRSLSDDDEKAFEKLQEMETRLSREEKNCVIGAEANKLHAMRFLLIQLLLQVL LRPGEFSEAASELVICCKKAFAASDLLDSGEEELDNDADPKLMDVLVDTFLSLLPQSSAPLRSAIEQVFKYFCNDVTNDGLLRMLRVIKKDLKPPRHREE GRDDGDDDDEDFLGIEEVEEGEGEGEEEMDEAETGETGEDEEQTDDSEAVTEVEEAGKELSDDSDGGMDDDAMFRMDAYLAQIFKDRKNQAGGETAQSQL VLFKLRVLSLLEVYLHENPAEPEVLMVYLNLARAFVNPQTAEISEQLGQRIWGILQKKILKAKDFPRGDAVQLPTLESLLEKNLKLASKPLKKKKSAGNL SKKKQLAMWKRHKMIVSLAQDSTFWILKIIGARNFPECELQGVIDIFKGELARYFESKTSQIKSDFLTEIFRRRPWIGHHLFGFLLEKCSRAKLEFRRVE ALDLVIEILKSMVSSGNDESNRNASKKVLKNHLQKLSHLIKELATNMPEKPSRRAEARKFCGKVFRYVSTYDLTKSFLKYLAPEAEAACESQLGELYLNF KKIER

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G64420			DNA polymerase V family (.1)		Potri.009G079900 [exp]	0	1
AT1G72440		SWA2, EDA25	SLOW WALKER2, embryo sac devel...		Potri.001G164100 [exp]	3.16	0.8306
AT4G29000	CPP		Tesmin/TSO1-like CXC domain-co...		Potri.006G160400 [exp]	4.12	0.7816
AT1G80410		OMA, EMB2753	OMISHA, EMBRYO DEFECTIVE 2753,...		Potri.003G056700 [exp]	4.24	0.7707
AT3G12340			FKBP-like peptidyl-prolyl cis-...		Potri.007G000500 [exp]	4.58	0.8270
AT1G33390		ATFAS4	FASCIATED STEM 4, RNA helicase...		Potri.002G201400 [exp]	6.92	0.8213
AT3G62330			Zinc knuckle (CCHC-type) famil...		Potri.002G192800 [exp]	7.74	0.8189
AT4G01270			RING/U-box superfamily protein...		Potri.002G164000 [exp]	8.36	0.8202
AT3G55160			unknown protein		Potri.004G128601 [exp]	8.94	0.7686
AT2G27610			Tetratricopeptide repeat (TPR)...		Potri.004G184800 [exp]	10.00	0.7958
AT3G18310			unknown protein		Potri.012G041300 [exp]	10.58	0.7902

Compare expression of checked genes

Potri.009G079900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.