Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G65630 180 / 1e-49 GTE7 global transcription factor group E7 (.1) AT5G10550 170 / 2e-45 GTE2 global transcription factor group E2 (.1) AT1G73150 162 / 7e-44 GTE3 global transcription factor group E3 (.1) AT1G17790 153 / 1e-40 DNA-binding bromodomain-containing protein (.1) AT5G14270 135 / 1e-33 ATBET9 bromodomain and extraterminal domain protein 9 (.1.2) AT1G06230 132 / 2e-32 GTE4 global transcription factor group E4 (.1.2.3) AT5G63320 126 / 4e-31 NPX1 nuclear protein X1 (.1.2.3) AT3G01770 121 / 6e-29 ATBET10 bromodomain and extraterminal domain protein 10 (.1) AT3G27260 118 / 7e-28 GTE8 global transcription factor group E8 (.1.2) AT2G34900 103 / 6e-24 GTE1, GTE01, IMB1 IMBIBITION-INDUCIBLE 1, GLOBAL TRANSCRIPTION FACTOR GROUP E1, Transcription factor GTE6 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G285700 [exp] 783 / 0 AT1G73150 214 / 4e-63 global transcription factor group E3 (.1) Potri.013G118900 [exp] 231 / 2e-67 AT1G06230 463 / 5e-153 global transcription factor group E4 (.1.2.3) Potri.019G090700 [exp] 230 / 5e-67 AT1G06230 443 / 2e-145 global transcription factor group E4 (.1.2.3) Potri.011G096400 [exp] 210 / 2e-61 AT1G06230 243 / 5e-72 global transcription factor group E4 (.1.2.3) Potri.012G094300 [exp] 166 / 1e-43 AT5G63320 513 / 9e-168 nuclear protein X1 (.1.2.3) Potri.015G091800 [exp] 157 / 9e-41 AT5G63320 521 / 6e-171 nuclear protein X1 (.1.2.3) Potri.001G376400 [exp] 132 / 1e-33 AT1G06230 267 / 4e-82 global transcription factor group E4 (.1.2.3) Potri.001G335000 [exp] 124 / 1e-29 AT3G27260 460 / 5e-151 global transcription factor group E8 (.1.2) Potri.001G355300 [exp] 109 / 4e-25 AT5G46550 201 / 5e-58 DNA-binding bromodomain-containing protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034067 [exp] 518 / 1e-179 AT1G06230 304 / 7e-95 global transcription factor group E4 (.1.2.3) Lus10007096 [exp] 499 / 3e-172 AT1G06230 213 / 1e-62 global transcription factor group E4 (.1.2.3) Lus10020470 [exp] 263 / 1e-83 AT5G65630 173 / 3e-49 global transcription factor group E7 (.1) Lus10010524 [exp] 223 / 2e-69 AT5G65630 110 / 1e-27 global transcription factor group E7 (.1) Lus10010525 [exp] 223 / 5e-69 AT5G65630 188 / 7e-56 global transcription factor group E7 (.1) Lus10033623 [exp] 230 / 2e-66 AT1G06230 493 / 9e-164 global transcription factor group E4 (.1.2.3) Lus10033624 [exp] 229 / 6e-66 AT1G06230 494 / 2e-163 global transcription factor group E4 (.1.2.3) Lus10017661 [exp] 229 / 6e-66 AT1G06230 499 / 3e-165 global transcription factor group E4 (.1.2.3) Lus10039630 [exp] 211 / 6e-61 AT5G65630 191 / 5e-54 global transcription factor group E7 (.1) Lus10014609 [exp] 136 / 8e-34 AT3G27260 458 / 2e-150 global transcription factor group E8 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00439 [poplar] [flax] Bromodomain Bromodomain CL0665 [poplar] [flax] BET PF17035 [poplar] [flax] BET Bromodomain extra-terminal - transcription regulation
Representative CDS sequence Show only first row Show all	>Potri.009G080000.10 pacid=42771030 polypeptide=Potri.009G080000.10.p locus=Potri.009G080000 ID=Potri.009G080000.10.v4.1 annot-version=v4.1 ATGGCGTCAGCTGTGTTAGCGAACCGGAACGAACCGAATTGGACGCAGCCACAGCCACGTGGTGGTGGAGCTAAATTCATGGGCAAAATCCCTTTCTCCA ACCCTAACCCTAAGTTCTCCAAAAAACGCCAATTTCAGCCACCTCAACCACCACAAATCCCTGACGTCGATGAATCTCCTTCAGCCGCTTCAGATGACGC GTCGTCTATCAACCGCCGTCCACAGAACAATCACCACGATTTCAACACCGGAGGATACGTGTCGTTCAATGTTAGCTCGTGTTCTAAGAAAGAACTAATC GAGCTAAAAAGTCGATTAGTTTACGAGCTTGAAAAGATCCGAGAGTTGAAAAACAGAATCGAATCCTCTGATTTCCACATCGGACAACCCAGCTCCAACT TCAGTAGCAAAAAGCAAACCTCTACAAACAAGAAAGTATCCGGCAACAAGCGGCCGTTTCCGGCCCCTTCAAATTTTAACAATTTTAAGCGATCAAGTCC AGATAATGCGCAATTGATGAAGAATTGCAGTCAAATTCTGTCGAAATTGATGAAGCAAAAATTAGGGTATATTTTTAATACTCCAGTAGATGTTGTGGGT TTGCAATTGCATGATTACCATGATATAATCAAGAATCCGATGGATTTGGGTACGGTGAAGACAAATTTGAGCAAGAATTTGTATGAATCGCCAAGGGATT TCGCTGCTGATGTTAGATTGACATTTAATAATGCCATGAAGTATAACCCTAAGGGTCATGAAGTTTATATTCTTGCCGAACAGTTTCTGACAAGATTTCA GGATTTGTATAGGCCGATTAAGGAGAAGGTGGGTGAGGATGTTGAAGAGGAGGAGAATGATCTAGTTCAAGAAGTGCAAGCGAGTTCTTGGGATCATATT AGAAGAGAGCCAGAGAGGGTTAGTAAAATTGATGGTGATTTTATGCCAGTTACAGCGAAATCTGATCCAATTGGCCAGCAGCAGCAGCCAACCGGGATGA ATCAAAACCCTAATTCCGTGAGGACGCCATCACCAATGAGGGTGCCGCAAGTGAAGCCATTGAAGCAACCAAAGCCGAAAGCAAAGGATCCAAATAAGCG AGAGATGAATCTTGAAGAGAAGCACAAGCTAGGTGTTGGTTTGCAGAGTCTGCCACAAGAGAAAATGGAGCAAGTTGTGCAGATTATTAGGAAGAGGAAT GGGCATTTGAGGCAAGAGGGTGATGAGATCGAGCTTGATATAGAGGCTGTTGATACAGAGACATTATGGGAGTTGGATCGGTTTGTGACTAATTACAAGA AGATGGTTAGCAAGATTAAGCGGCAAGCTTTGATGGGTATTAACACAAATGCGGGCGCTACTGCTATCAGTGAAGGCAATAATAAGGATGTACCTGGAAA TGATAGAATGGAGGTGGTAAATGAGGCGAAGAAGCCGAAGAAAGGGGATGTTGGGGATGAAGATGTTGACATTGGCGATGAGATGCCAATGAGTAGTTTC CCACCAGTGGAGATTGAGAAAGACAATGGACATGCAAGTAGCAGTTCCAGTAGCTCCAGTAGTTCGAGTGATGATTCTTCATCTTCAAGTGATTCTGATT CAGGGAGTTCTTCAGGGAGTGATTCAGAGGATGCACATTCATGA
AA sequence Show only first row Show all	>Potri.009G080000.10 pacid=42771030 polypeptide=Potri.009G080000.10.p locus=Potri.009G080000 ID=Potri.009G080000.10.v4.1 annot-version=v4.1 MASAVLANRNEPNWTQPQPRGGGAKFMGKIPFSNPNPKFSKKRQFQPPQPPQIPDVDESPSAASDDASSINRRPQNNHHDFNTGGYVSFNVSSCSKKELI ELKSRLVYELEKIRELKNRIESSDFHIGQPSSNFSSKKQTSTNKKVSGNKRPFPAPSNFNNFKRSSPDNAQLMKNCSQILSKLMKQKLGYIFNTPVDVVG LQLHDYHDIIKNPMDLGTVKTNLSKNLYESPRDFAADVRLTFNNAMKYNPKGHEVYILAEQFLTRFQDLYRPIKEKVGEDVEEEENDLVQEVQASSWDHI RREPERVSKIDGDFMPVTAKSDPIGQQQQPTGMNQNPNSVRTPSPMRVPQVKPLKQPKPKAKDPNKREMNLEEKHKLGVGLQSLPQEKMEQVVQIIRKRN GHLRQEGDEIELDIEAVDTETLWELDRFVTNYKKMVSKIKRQALMGINTNAGATAISEGNNKDVPGNDRMEVVNEAKKPKKGDVGDEDVDIGDEMPMSSF PPVEIEKDNGHASSSSSSSSSSSDDSSSSSDSDSGSSSGSDSEDAHS

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G65630		GTE7	global transcription factor gr...		Potri.009G080000 [exp]	0	1
AT1G73150		GTE3	global transcription factor gr...		Potri.001G285700 [exp]	1.41	0.7055	GTE906
AT5G45190			Cyclin family protein (.1.2)		Potri.003G148800 [exp]	7.68	0.7068
AT5G45190			Cyclin family protein (.1.2)		Potri.001G081600 [exp]	25.69	0.6825
AT3G50670		U1SNRNP, U1-70K	U1 small nuclear ribonucleopro...		Potri.005G124300 [exp]	38.67	0.6439
AT1G33980		ATUPF3, UPF3	Smg-4/UPF3 family protein (.1....		Potri.004G225800 [exp]	41.53	0.6327
AT4G08180		ORP1C	OSBP(oxysterol binding protein...		Potri.019G015111 [exp]	44.18	0.5549
AT1G67900			Phototropic-responsive NPH3 fa...		Potri.008G186100 [exp]	54.06	0.5960
AT2G16485			nucleic acid binding;zinc ion ...		Potri.007G016000 [exp]	77.92	0.6201
AT5G44080	bZIP		Basic-leucine zipper (bZIP) tr...		Potri.002G067400 [exp]	81.16	0.5860	Pt-GBF4.1
AT1G07990			SIT4 phosphatase-associated fa...		Potri.004G211500 [exp]	126.55	0.5311

Compare expression of checked genes

Potri.009G080000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.