Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G64430 281 / 6e-89 Octicosapeptide/Phox/Bem1p family protein (.1) AT5G09620 251 / 2e-77 Octicosapeptide/Phox/Bem1p family protein (.1) AT2G01190 143 / 1e-36 PDE331 PIGMENT DEFECTIVE 331, Octicosapeptide/Phox/Bem1p family protein (.1) AT4G05150 128 / 3e-32 Octicosapeptide/Phox/Bem1p family protein (.1) AT5G49920 120 / 1e-30 Octicosapeptide/Phox/Bem1p family protein (.1) AT3G26510 107 / 9e-27 Octicosapeptide/Phox/Bem1p family protein (.1.2.3.4.5) AT5G57610 113 / 2e-26 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1) AT3G46920 111 / 8e-26 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1) AT1G70640 100 / 1e-24 octicosapeptide/Phox/Bem1p (PB1) domain-containing protein (.1) AT3G24715 104 / 2e-23 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G285800 [exp] 653 / 0 AT5G64430 270 / 8e-85 Octicosapeptide/Phox/Bem1p family protein (.1) Potri.002G108800 [exp] 193 / 6e-57 AT5G09620 146 / 3e-39 Octicosapeptide/Phox/Bem1p family protein (.1) Potri.004G032200 [exp] 143 / 5e-38 AT4G05150 333 / 1e-110 Octicosapeptide/Phox/Bem1p family protein (.1) Potri.011G041100 [exp] 143 / 8e-38 AT4G05150 297 / 4e-96 Octicosapeptide/Phox/Bem1p family protein (.1) Potri.010G119500 [exp] 137 / 1e-34 AT2G01190 388 / 1e-124 PIGMENT DEFECTIVE 331, Octicosapeptide/Phox/Bem1p family protein (.1) Potri.012G053500 [exp] 129 / 6e-32 AT3G18230 298 / 6e-92 Octicosapeptide/Phox/Bem1p family protein (.1) Potri.008G124700 [exp] 128 / 1e-31 AT2G01190 430 / 3e-141 PIGMENT DEFECTIVE 331, Octicosapeptide/Phox/Bem1p family protein (.1) Potri.008G186500 [exp] 109 / 2e-27 AT3G26510 152 / 1e-46 Octicosapeptide/Phox/Bem1p family protein (.1.2.3.4.5) Potri.003G176100 [exp] 112 / 4e-26 AT1G04700 725 / 0.0 PB1 domain-containing protein tyrosine kinase (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035641 [exp] 281 / 5e-93 AT5G09620 243 / 6e-78 Octicosapeptide/Phox/Bem1p family protein (.1) Lus10042925 [exp] 257 / 4e-80 AT5G09620 236 / 7e-72 Octicosapeptide/Phox/Bem1p family protein (.1) Lus10010753 [exp] 194 / 3e-60 AT5G09620 182 / 5e-56 Octicosapeptide/Phox/Bem1p family protein (.1) Lus10002588 [exp] 144 / 7e-38 AT4G05150 319 / 2e-104 Octicosapeptide/Phox/Bem1p family protein (.1) Lus10018412 [exp] 131 / 2e-33 AT4G05150 304 / 1e-98 Octicosapeptide/Phox/Bem1p family protein (.1) Lus10007952 [exp] 129 / 1e-31 AT2G01190 444 / 1e-146 PIGMENT DEFECTIVE 331, Octicosapeptide/Phox/Bem1p family protein (.1) Lus10034643 [exp] 113 / 1e-27 AT2G01190 186 / 1e-53 PIGMENT DEFECTIVE 331, Octicosapeptide/Phox/Bem1p family protein (.1) Lus10035772 [exp] 110 / 2e-26 AT5G49920 196 / 2e-60 Octicosapeptide/Phox/Bem1p family protein (.1) Lus10037350 [exp] 110 / 2e-26 AT5G49920 197 / 8e-61 Octicosapeptide/Phox/Bem1p family protein (.1) Lus10001314 [exp] 110 / 7e-26 AT5G57610 393 / 1e-125 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0072 [poplar] [flax] Ubiquitin PF00564 [poplar] [flax] PB1 PB1 domain
Representative CDS sequence Show only first row Show all	>Potri.009G080200.1 pacid=42772069 polypeptide=Potri.009G080200.1.p locus=Potri.009G080200 ID=Potri.009G080200.1.v4.1 annot-version=v4.1 ATGGATAACACCTATTCTTATAATTCATACCCAGATTCAGGCGACTCGTCGCCTAGATCTCGTGAAATCGATTTTGACAACCCGACACCATGGGAAGACC AATCACAACAACCTCAAAGCTACAAAGCAAAGTTCATGTGTAGTTATGGAGGCAAGATCCACCCACGTCCGCACGACAACCAGCTTGTTTACATGGGTGG AGAGACCAAAATCCTCGCTGCTGATCGAAACATCAAGTTCTCTGTCATGATAAGCAAACTCTCTGCGCTTTGTGGTGACACCGACGTGGCCTTCAAGTAC CAGCTCCCAGGTGAAGATCTTGACGCTTTAATATCTGTCACTAATGATGATGATCTTGAACACATGATGCATGAGTATGATCGTCTCTATCGTGCCACTG CTAAGCCCGCCCGCATGAGGCTGTTTCTTTTCCCGGTTAACCCGTCACCTGCAAGTTTTGGCTCCGATGGTGGCAGATCGGATCGGGAGCGCTTTGTTGA GGCTTTGAATTCGGTTCCGAGTCAGGTTGTTGAAGCAGCCAAAACTGCAGCGAATAACGTTGATTTCTTATTCGGGTTAGATAAAGGAGCCCCGCCGCCG CCGCCTGTGAAAGTGCCGGATTTGCCTGAAATCCATGCTGGGTCGGGTCATGATGATCGGGTTATTGGGTCGGATCCTTTGAGTTTGCAGGCCCAGTTGC AGAGAATGCAAATTAGAGAACCTGAGCAGCAAGTTGGGTATAATAGAAAAAACAGCGATGAAAATCTGGTCGGTGGTTATGCTGCTGCTGGCGGTGATTA TTACATGCAAAAATTGCCTGAAAGAGCACCTCCTGCGAATTTGCCTGTGACAATGCCACAACAGGTGACCGCTTCACCAGGTTATTGGTCCGAGAAACAG GCTGCCGGAGGCGGGTTTCCGGCAGGGATGACCGTGACCACCTCACCGGGTCAAATGGAGCAACCCGTTTATGTGATACAGGGTCCAGGTCCAGGGACTG TTTATCATGCACCTCCCGTAATGCGACAGGTTACCGGACAAACCGGTCAGGGCTATTACATGCAAAGAATGGGTGGTCCAGGTCACGGACCCGATGTTTA CCGAGAGCAGCCGGTATATAATATGGTCCCACAACATCAACAGCCCCCACCACCAATGGGTCAAATGGGAGTTGTGAGGCCTAGTGGGCCGGGGGTAGCC ATGCAGGATGCCGGATACGCACAGATGGCTTATGATAGACAGGTTTACTATGCTGCGGCGGGTGGTGTGGTTCACCAGCAACAACAGCAACAACTGCAAC CACCACTACAGTATCAAGGGGTTGGTGGTGGTGTAGCAGTAAGTGGTGAAATGAGACATGGTGGTGGTGGCGGGCCATTGGGTCCAGAAGCTAAGGTTGT TACAGCAAAGGTTCCACAGGCTTCTGTGTGA
AA sequence Show only first row Show all	>Potri.009G080200.1 pacid=42772069 polypeptide=Potri.009G080200.1.p locus=Potri.009G080200 ID=Potri.009G080200.1.v4.1 annot-version=v4.1 MDNTYSYNSYPDSGDSSPRSREIDFDNPTPWEDQSQQPQSYKAKFMCSYGGKIHPRPHDNQLVYMGGETKILAADRNIKFSVMISKLSALCGDTDVAFKY QLPGEDLDALISVTNDDDLEHMMHEYDRLYRATAKPARMRLFLFPVNPSPASFGSDGGRSDRERFVEALNSVPSQVVEAAKTAANNVDFLFGLDKGAPPP PPVKVPDLPEIHAGSGHDDRVIGSDPLSLQAQLQRMQIREPEQQVGYNRKNSDENLVGGYAAAGGDYYMQKLPERAPPANLPVTMPQQVTASPGYWSEKQ AAGGGFPAGMTVTTSPGQMEQPVYVIQGPGPGTVYHAPPVMRQVTGQTGQGYYMQRMGGPGHGPDVYREQPVYNMVPQHQQPPPPMGQMGVVRPSGPGVA MQDAGYAQMAYDRQVYYAAAGGVVHQQQQQQLQPPLQYQGVGGGVAVSGEMRHGGGGGPLGPEAKVVTAKVPQASV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G64430			Octicosapeptide/Phox/Bem1p fam...		Potri.009G080200 [exp]	0	1
AT2G30990			Protein of unknown function (D...		Potri.014G142800 [exp]	8.54	0.8422
AT1G06650			2-oxoglutarate (2OG) and Fe(II...		Potri.011G156200 [exp]	13.52	0.8229
AT3G23160			Protein of unknown function (D...		Potri.008G164700 [exp]	13.85	0.7975
AT5G58740			HSP20-like chaperones superfam...		Potri.009G046000 [exp]	14.42	0.7220
AT4G10170			SNARE-like superfamily protein...		Potri.013G094900 [exp]	14.83	0.8182
AT1G34370	C2H2ZnF	STOP1	sensitive to proton rhizotoxic...		Potri.013G114600 [exp]	16.61	0.8308
AT3G50950		ZAR1	HOPZ-ACTIVATED RESISTANCE 1 (....		Potri.006G014400 [exp]	17.32	0.8175
AT1G77920	bZIP		bZIP transcription factor fami...		Potri.002G090700 [exp]	23.66	0.8174	TGA3.1
AT4G14090			UDP-Glycosyltransferase superf...		Potri.017G101800 [exp]	28.28	0.8199
AT5G47750		PK5, D6PKL2	D6 protein kinase like 2 (.1)		Potri.016G004900 [exp]	34.46	0.7236

Compare expression of checked genes

Potri.009G080200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.