Plant FIBer expression Database

Potri.009G080300 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G64460 448 / 5e-161 Phosphoglycerate mutase family protein (.1.2.3.4.5.6.7.8)
AT1G58280 397 / 3e-140 Phosphoglycerate mutase family protein (.1.2.3.4)
AT2G17280 370 / 3e-130 Phosphoglycerate mutase family protein (.1.2)
AT1G09935 270 / 2e-91 Phosphoglycerate mutase family protein (.1)
AT1G09932 207 / 4e-66 Phosphoglycerate mutase family protein (.1.2)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.001G286000
[exp]
536 / 0 AT5G64460 438 / 9e-157 Phosphoglycerate mutase family protein (.1.2.3.4.5.6.7.8)
Potri.002G108500
[exp]
419 / 2e-148 AT5G64460 412 / 2e-145 Phosphoglycerate mutase family protein (.1.2.3.4.5.6.7.8)
Potri.002G108600
[exp]
310 / 7e-107 AT5G64460 298 / 3e-102 Phosphoglycerate mutase family protein (.1.2.3.4.5.6.7.8)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10020467
[exp]
436 / 4e-156 AT5G64460 435 / 1e-155 Phosphoglycerate mutase family protein (.1.2.3.4.5.6.7.8)
Lus10007093
[exp]
432 / 1e-154 AT5G64460 422 / 8e-151 Phosphoglycerate mutase family protein (.1.2.3.4.5.6.7.8)
Lus10032819
[exp]
395 / 9e-140 AT5G64460 386 / 2e-136 Phosphoglycerate mutase family protein (.1.2.3.4.5.6.7.8)
Lus10032821
[exp]
318 / 1e-109 AT1G58280 320 / 4e-110 Phosphoglycerate mutase family protein (.1.2.3.4)
Lus10032820
[exp]
234 / 5e-77 AT2G17280 233 / 7e-77 Phosphoglycerate mutase family protein (.1.2)
Lus10001381
[exp]
69 / 1e-14 AT2G17280 74 / 3e-17 Phosphoglycerate mutase family protein (.1.2)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0071 His_phosphatase PF00300 His_Phos_1 Histidine phosphatase superfamily (branch 1)
Representative CDS sequence
>Potri.009G080300.10 pacid=42772769 polypeptide=Potri.009G080300.10.p locus=Potri.009G080300 ID=Potri.009G080300.10.v4.1 annot-version=v4.1
ATGGATAGTGGTCCAGGTCCGAGTTTGTATCCATTGCACCGCTGCAAAACAATTCATCTGGTGAGACATGCTCAAGGATTGCATAATGTTGAGGGAGAAA
AGAACTACAAAGCATACTTGAATCCTGAATATTTGGACGCCCCCCTCACTCAACTAGGTTGGCAACAGGTTGATAATTTGCGCAAGCATGTCCATGCATC
TGGGCTCTCCAAGAGGGTTGAATTAGTTGTTACATCCCCATTGTTCAGGACATTGCAAACAGCTGTTGGAGTTTTTGGAGGGGAGGGCTACACAGATGGG
GCGAATCCACTGCCACTAATGGTGGCAAATGCTGGAAGCAGTGGTCGAGCAGCAATTTCAAGCCACAATTCTCCCCCATTCATTGCAGTAGAAGATTGTC
GAGAACATTTTGGTGTACATCCTTGTGACAAGAGACACAATGTCAGTGACTATCAATTTCTCTTTCCTGCAGTTGACTTTTCTCTGATAGAAACAGATGA
GGATCTACTGTGGAAGGCCGATGTGAGAGAGTCAACTGAAGAACTTGCTGCAAGGGGACTGAAGTTTCTTAACTGGTTGTGGACTAGGAAAGAGAAGGAG
ATAGCAATTGTTACCCATAGCGGGTTTTTGGTTCATACATTGCGTGCATTTGGAAATGACTGCGTTCCATCAGTGAAGAAAGAAATGTGCACACGCTTTG
CTAACTGTGAGCTTCGATCTATGGTCATTGTTGACAGAAGCATGATTGGATCAGATGTTTCAACAACTAACTATCCTGGAAAGGTTCCTCCTGGGTCGGA
TCTCCCTAGTGATGATGCCGAGGAAGAAGCACCCAATTCAATTTAG
AA sequence
>Potri.009G080300.10 pacid=42772769 polypeptide=Potri.009G080300.10.p locus=Potri.009G080300 ID=Potri.009G080300.10.v4.1 annot-version=v4.1
MDSGPGPSLYPLHRCKTIHLVRHAQGLHNVEGEKNYKAYLNPEYLDAPLTQLGWQQVDNLRKHVHASGLSKRVELVVTSPLFRTLQTAVGVFGGEGYTDG
ANPLPLMVANAGSSGRAAISSHNSPPFIAVEDCREHFGVHPCDKRHNVSDYQFLFPAVDFSLIETDEDLLWKADVRESTEELAARGLKFLNWLWTRKEKE
IAIVTHSGFLVHTLRAFGNDCVPSVKKEMCTRFANCELRSMVIVDRSMIGSDVSTTNYPGKVPPGSDLPSDDAEEEAPNSI

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT5G64460 Phosphoglycerate mutase family... Potri.009G080300
[exp]
0 1
AT1G55510 BCDH BETA1, BCD... branched-chain alpha-keto acid... Potri.003G222800
[exp]
1.73 0.9187
AT3G56630 CYP94D2 "cytochrome P450, family 94, s... Potri.016G031700
[exp]
2.44 0.9200 Pt-CYP94.6
AT4G16580 Protein phosphatase 2C family ... Potri.005G125700
[exp]
3.00 0.9280
AT2G46340 SPA1 SUPPRESSOR OF PHYA-105 1, SPA ... Potri.014G095300
[exp]
5.91 0.9076 SPA1.1
AT5G63050 EMB2759 embryo defective 2759 (.1.2) Potri.012G088600
[exp]
7.74 0.8893
AT1G30680 toprim domain-containing prote... Potri.001G461200
[exp]
10.77 0.8775
AT3G56630 CYP94D2 "cytochrome P450, family 94, s... Potri.016G031800
[exp]
13.56 0.9102
AT2G13840 Polymerase/histidinol phosphat... Potri.001G206400
[exp]
13.85 0.8804
AT4G21210 ATRP1 PPDK regulatory protein (.1.2) Potri.004G022900
[exp]
14.14 0.8707
AT4G01995 unknown protein Potri.002G194500
[exp]
14.96 0.8856

Potri.009G080300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.