Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G58290 673 / 0 AtHEMA1, HEMA1 Arabidopsis thaliana hemA 1, Glutamyl-tRNA reductase family protein (.1) AT1G09940 663 / 0 HEMA2 Glutamyl-tRNA reductase family protein (.1) AT2G31250 528 / 0 HEMA3 Glutamyl-tRNA reductase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G286400 [exp] 941 / 0 AT1G58290 666 / 0.0 Arabidopsis thaliana hemA 1, Glutamyl-tRNA reductase family protein (.1) Potri.002G107800 [exp] 662 / 0 AT1G58290 756 / 0.0 Arabidopsis thaliana hemA 1, Glutamyl-tRNA reductase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028226 [exp] 654 / 0 AT1G58290 801 / 0.0 Arabidopsis thaliana hemA 1, Glutamyl-tRNA reductase family protein (.1) Lus10042932 [exp] 332 / 6e-110 AT1G09940 433 / 4e-150 Glutamyl-tRNA reductase family protein (.1) Lus10042931 [exp] 277 / 9e-91 AT1G58290 337 / 2e-114 Arabidopsis thaliana hemA 1, Glutamyl-tRNA reductase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00745 [poplar] [flax] GlutR_dimer Glutamyl-tRNAGlu reductase, dimerisation domain CL0063 [poplar] [flax] NADP_Rossmann PF03807 [poplar] [flax] F420_oxidored NADP oxidoreductase coenzyme F420-dependent CL0063 [poplar] [flax] PF05201 [poplar] [flax] GlutR_N Glutamyl-tRNAGlu reductase, N-terminal domain
Representative CDS sequence Show only first row Show all	>Potri.009G080600.3 pacid=42772329 polypeptide=Potri.009G080600.3.p locus=Potri.009G080600 ID=Potri.009G080600.3.v4.1 annot-version=v4.1 ATGGCGGCGGCATTCGGTTTCGCCACCTCTATTGCTACTTCTACACCATCAAATCCTAACCTCCGTCCATTGGCTGTGTCTTGTCCTCAGTTGCAAACCT TCTACAAACCCTTGAACAATAGAAGGGCATCGGCTTTAAATCAAAGCCTTCGTGTTAGATGTGAAAGTGTGAGTCAGAATTTGAATTCAATCGACAAGGA AGAATTGAAGAGATCGAGTGCTATGGCGCTTGCGCAACTCAAGGCTTCTGCAATCGACAGGTATACAAAGGAAAAGAGCAGCATCATTGTCATTGGACTC AATGTGCACACAGCACCAGTTGATGTACGTGAGAAGCTGGCCATCCAAGAAGCCCAGTGGCCTCAAGCCATTAGGGAGCTCTGTGCTTTAAATCATATAG AAGAAGCTGCTGTTCTCAGTACTTGTAACAGAATCGAAGTATATGTTGTGGCTCTTTCTCAACATCGTGGAGTCAAAGAAGTTACTGAATGGATGTCTAA GATTAGCGGGGTTTCTGTTTCAGAGCTTTGCCAACACCGATTTATGTTGTATAATAAAGATGCCACAAGACACCTATTTGAGGTAGCTTCTGGACTCAAC TCAATTGTTCTAGGAGAAGGTCAAATCCTTGCTCAGGTGAAGCAAGTTAAAAAACTTGGACAAGGAGTTGATGGCTTCAATAAGAAAATTGGTGGGTTGT TTGAGCATGCTATCATTACTGGGAAACGGGTTAGAACTGAAACCAACATTTCCTCTGGGTCAGTTTCTGTTAGTTCAGCTGCTGTAGAGCTTGCATTAAT GAAGCTTCCAGAGTCCTCATATGCAACTACTAGGGTATTAGTAATTGGAGCTGGCAAAATGGGGAAGCTTGTGATCAAACACTTGGCTGCTAAAGGGTGC AAAGAAATGGTGGTTGTGAACAGAACTGAGGAGAAAGTTGCTTTAATCCGTGAAGAGCTTAAGGATATTCAAATCATCTATAAGCCCCTTTCAGAAATGA TGGCATGTGCTGCTGAAGCAGATGTAATTTTCACAAGCACTGCATCAGACACTCCACTGTTCTTGAAAGAGCATGCACAGACACTCCCTGTGGACACAGA AATGGGAAGGCGGCTTTTCATTGATATTTCAGTTCCCAGGAATGTAGGACCATGTGTCTCGGATCTTGAGACAGCAGAAGTTTACAATGTCGACGATCTC AAGGATATTGTGGCAGCTAATAAGGAGGATCGGCTCCGGAAGGCTATGGAAGCACAAATAATTATTTCCGAGGAATTAGAGCACTTTGAAGCTTGGAAGG ATTCCCTTGAAGCCGTTCCTACCATTAAAAAGCTACGGGCTTATCTTGAAAGGATTAGGGCTTCTGAACTGGACAAGTGTCTCTCGAAGATGGGTGATAT TACAGATAAACAGAAGAAAGCTATTTATGATCTTAGCATGGGCATGATGAAGAAGTTTCTTCATGGTCCAATGCAGCACCTAAGATGCGATGGGAGGAGT GACTGCCAAAAACCAGAGGAGATGCTTGAGATTATGCATGCTGTGAATAGAATGTTTGACCTTGAGACGGAGATAATTTTGGACACAGTTCGAACGAAAA TGGAAAGAATCAAGAAGTGA
AA sequence Show only first row Show all	>Potri.009G080600.3 pacid=42772329 polypeptide=Potri.009G080600.3.p locus=Potri.009G080600 ID=Potri.009G080600.3.v4.1 annot-version=v4.1 MAAAFGFATSIATSTPSNPNLRPLAVSCPQLQTFYKPLNNRRASALNQSLRVRCESVSQNLNSIDKEELKRSSAMALAQLKASAIDRYTKEKSSIIVIGL NVHTAPVDVREKLAIQEAQWPQAIRELCALNHIEEAAVLSTCNRIEVYVVALSQHRGVKEVTEWMSKISGVSVSELCQHRFMLYNKDATRHLFEVASGLN SIVLGEGQILAQVKQVKKLGQGVDGFNKKIGGLFEHAIITGKRVRTETNISSGSVSVSSAAVELALMKLPESSYATTRVLVIGAGKMGKLVIKHLAAKGC KEMVVVNRTEEKVALIREELKDIQIIYKPLSEMMACAAEADVIFTSTASDTPLFLKEHAQTLPVDTEMGRRLFIDISVPRNVGPCVSDLETAEVYNVDDL KDIVAANKEDRLRKAMEAQIIISEELEHFEAWKDSLEAVPTIKKLRAYLERIRASELDKCLSKMGDITDKQKKAIYDLSMGMMKKFLHGPMQHLRCDGRS DCQKPEEMLEIMHAVNRMFDLETEIILDTVRTKMERIKK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G58290		AtHEMA1, HEMA1	Arabidopsis thaliana hemA 1, G...		Potri.009G080600 [exp]	0	1
AT4G39830			Cupredoxin superfamily protein...		Potri.007G088358 [exp]	1.41	0.9761
AT1G80840	WRKY	ATWRKY40, WRKY4...	WRKY DNA-binding protein 40 (....		Potri.003G182200 [exp]	2.00	0.9758	WRKY40.2
AT4G20780		CML42	calmodulin like 42 (.1)		Potri.016G142000 [exp]	2.82	0.9626
AT2G44840	AP2_ERF	ATERF13, EREBP	ethylene-responsive element bi...		Potri.014G046600 [exp]	4.24	0.9742
AT4G39830			Cupredoxin superfamily protein...		Potri.007G088290 [exp]	4.89	0.9668
AT5G41330			BTB/POZ domain with WD40/YVTN ...		Potri.001G102300 [exp]	5.00	0.9715
					Potri.016G134100 [exp]	5.09	0.9543
AT2G44840	AP2_ERF	ATERF13, EREBP	ethylene-responsive element bi...		Potri.014G047000 [exp]	5.29	0.9732	ERF7
AT4G39830			Cupredoxin superfamily protein...		Potri.007G088222 [exp]	7.07	0.9574
AT2G27310			F-box family protein (.1)		Potri.009G160700 [exp]	7.41	0.9567

Compare expression of checked genes

Potri.009G080600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.