Plant FIBer expression Database

Potri.009G080700 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT4G21860 253 / 4e-86 MSRB2 methionine sulfoxide reductase B 2 (.1.2.3)
AT4G04800 243 / 1e-82 ATMSRB3 methionine sulfoxide reductase B3 (.1)
AT4G04830 235 / 5e-80 ATMSRB5 methionine sulfoxide reductase B5 (.1.2)
AT4G04810 219 / 9e-74 ATMSRB4 methionine sulfoxide reductase B4 (.1)
AT4G21830 212 / 1e-70 ATMSRB7 methionine sulfoxide reductase B7 (.1.2)
AT4G21840 210 / 5e-70 ATMSRB8 methionine sulfoxide reductase B8 (.1)
AT4G21850 204 / 9e-68 ATMSRB9 methionine sulfoxide reductase B9 (.1.2)
AT4G04840 202 / 2e-66 ATMSRB6 methionine sulfoxide reductase B6 (.1)
AT1G53670 115 / 5e-32 MSRB1, ATMSRB1 methionine sulfoxide reductase B 1 (.1.2)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.001G286500
[exp]
340 / 2e-120 AT4G21860 254 / 1e-86 methionine sulfoxide reductase B 2 (.1.2.3)
Potri.008G198600
[exp]
228 / 2e-77 AT4G04830 221 / 1e-75 methionine sulfoxide reductase B5 (.1.2)
Potri.011G114300
[exp]
102 / 6e-27 AT1G53670 231 / 7e-78 methionine sulfoxide reductase B 1 (.1.2)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10020486
[exp]
264 / 3e-90 AT4G21860 254 / 1e-86 methionine sulfoxide reductase B 2 (.1.2.3)
Lus10007105
[exp]
261 / 4e-89 AT4G21860 251 / 2e-85 methionine sulfoxide reductase B 2 (.1.2.3)
Lus10009574
[exp]
239 / 3e-81 AT4G04830 225 / 2e-77 methionine sulfoxide reductase B5 (.1.2)
Lus10013727
[exp]
112 / 1e-30 AT1G53670 253 / 2e-86 methionine sulfoxide reductase B 1 (.1.2)
Lus10005593
[exp]
109 / 2e-29 AT1G53670 246 / 1e-83 methionine sulfoxide reductase B 1 (.1.2)
Lus10007106
[exp]
71 / 4e-14 AT5G09630 150 / 1e-41 LisH/CRA/RING-U-box domains-containing protein (.1)
PFAM info
Representative CDS sequence
>Potri.009G080700.1 pacid=42772521 polypeptide=Potri.009G080700.1.p locus=Potri.009G080700 ID=Potri.009G080700.1.v4.1 annot-version=v4.1
ATGGGCTTTAACAGCCTGAAACCTCCCCTACTCTCCTCCACCAAAACAATTCTCTCCTCCACACCTACCAGACACGCTTTCTCCAAACTTATCTCTCCAC
TTCCCTCCATATCCACCTCCTTCACCAAAACCCATTTCAATTTTTTATCTCCAAAACCAACTGCCCACTCCATTTCAGCTACTGCTTCTATTGGGTCCAT
CTATCAAACCAAGCGGCAGTTTCGTGGTGGTGGGGTCATAGCCATGGCTGCTCCTGGGTCCGTCCAGAAGTCCGAGGAGGAATGGCGTGTTGTTTTGTCC
CCAGAGCAGTTTCGTATTTTGAGACAAAAAGGCACAGAGTATCCTGGCACGGGGGAATATGACAAAGTTTTTGAAGAGGGTGTCTACGGTTGTGCAGGAT
GTGGAACACCCCTGTACAGGTCGACAACCAAATTTAATTCCGGTTGTGGTTGGCCAGCTTTCTACGAGGGTCTTCCTGGAGCCATTAATCGCATTCCGGA
TCCAGATGGTATGAGGATTGAAATTACATGTGCAGCTTGTGGTGGACATCTGGGACATGTGTTTAAAGGCGAAGGGTTTCGAACTCCCACCGATGAACGC
CATTGTGTCAATAGTGTATCGCTTAAGTTTGAACCTGCAAATTCTTCCCAGTGA
AA sequence
>Potri.009G080700.1 pacid=42772521 polypeptide=Potri.009G080700.1.p locus=Potri.009G080700 ID=Potri.009G080700.1.v4.1 annot-version=v4.1
MGFNSLKPPLLSSTKTILSSTPTRHAFSKLISPLPSISTSFTKTHFNFLSPKPTAHSISATASIGSIYQTKRQFRGGGVIAMAAPGSVQKSEEEWRVVLS
PEQFRILRQKGTEYPGTGEYDKVFEEGVYGCAGCGTPLYRSTTKFNSGCGWPAFYEGLPGAINRIPDPDGMRIEITCAACGGHLGHVFKGEGFRTPTDER
HCVNSVSLKFEPANSSQ

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT4G21860 MSRB2 methionine sulfoxide reductase... Potri.009G080700
[exp]
0 1
AT5G51545 LPA2 low psii accumulation2 (.1) Potri.015G129600
[exp]
2.00 0.9725
AT5G23040 CDF1 CELL GROWTH DEFECT FACTOR 1, P... Potri.012G057700
[exp]
5.65 0.9587
AT5G52960 unknown protein Potri.012G033700
[exp]
8.36 0.9637
AT1G68660 Ribosomal protein L12/ ATP-dep... Potri.010G128500
[exp]
10.95 0.9440
AT3G44380 Late embryogenesis abundant (L... Potri.001G218400
[exp]
11.40 0.9337
AT1G68590 Ribosomal protein PSRP-3/Ycf65... Potri.010G127300
[exp]
12.36 0.9614
AT4G11175 Nucleic acid-binding, OB-fold-... Potri.018G038900
[exp]
16.43 0.9575
AT3G06950 Pseudouridine synthase family ... Potri.008G206200
[exp]
19.67 0.9530
AT1G73770 unknown protein Potri.012G046000
[exp]
20.04 0.9331
AT5G03370 acylphosphatase family (.1) Potri.016G093000
[exp]
22.44 0.9442

Potri.009G080700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.