Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G04850 840 / 0 ATKEA3, KEA3 K+ efflux antiporter 3, K+ efflux antiporter 3 (.1), K+ efflux antiporter 3 (.2) AT1G01790 223 / 1e-60 ATKEA1, KEA1 K+ efflux antiporter 1, K+ EFFLUX ANTIPORTER 1, K+ efflux antiporter 1 (.1) AT4G00630 223 / 1e-60 ATKEA2, KEA2 K+ efflux antiporter 2, K+ efflux antiporter 2 (.1), K+ efflux antiporter 2 (.2) AT5G51710 76 / 4e-14 ATKEA5, KEA5 K+ efflux antiporter 5, ARABIDOPSIS THALIANA K+ EFFLUX ANTIPORTER 5, K+ efflux antiporter 5 (.1), K+ efflux antiporter 5 (.2) AT5G11800 57 / 5e-08 ATKEA6, KEA6 K+ efflux antiporter 6, ARABIDOPSIS THALIANA K+ EFFLUX ANTIPORTER 6, K+ efflux antiporter 6 (.1) AT2G19600 56 / 6e-08 ATKEA4 K+ efflux antiporter 4, K+ efflux antiporter 4, K+ efflux antiporter 4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G157200 [exp] 223 / 2e-60 AT1G01790 1343 / 0.0 K+ efflux antiporter 1, K+ EFFLUX ANTIPORTER 1, K+ efflux antiporter 1 (.1) Potri.014G080800 [exp] 219 / 2e-59 AT1G01790 1300 / 0.0 K+ efflux antiporter 1, K+ EFFLUX ANTIPORTER 1, K+ efflux antiporter 1 (.1) Potri.015G132400 [exp] 78 / 2e-14 AT5G51710 791 / 0.0 K+ efflux antiporter 5, ARABIDOPSIS THALIANA K+ EFFLUX ANTIPORTER 5, K+ efflux antiporter 5 (.1), K+ efflux antiporter 5 (.2) Potri.012G130500 [exp] 77 / 2e-14 AT5G51710 830 / 0.0 K+ efflux antiporter 5, ARABIDOPSIS THALIANA K+ EFFLUX ANTIPORTER 5, K+ efflux antiporter 5 (.1), K+ efflux antiporter 5 (.2) Potri.006G230400 [exp] 51 / 3e-06 AT5G11800 731 / 0.0 K+ efflux antiporter 6, ARABIDOPSIS THALIANA K+ EFFLUX ANTIPORTER 6, K+ efflux antiporter 6 (.1) Potri.018G054100 [exp] 50 / 7e-06 AT5G11800 740 / 0.0 K+ efflux antiporter 6, ARABIDOPSIS THALIANA K+ EFFLUX ANTIPORTER 6, K+ efflux antiporter 6 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007104 [exp] 817 / 0 AT4G04850 936 / 0.0 K+ efflux antiporter 3, K+ efflux antiporter 3 (.1), K+ efflux antiporter 3 (.2) Lus10020485 [exp] 590 / 0 AT4G04850 704 / 0.0 K+ efflux antiporter 3, K+ efflux antiporter 3 (.1), K+ efflux antiporter 3 (.2) Lus10020484 [exp] 294 / 1e-93 AT4G04850 286 / 1e-91 K+ efflux antiporter 3, K+ efflux antiporter 3 (.1), K+ efflux antiporter 3 (.2) Lus10017823 [exp] 163 / 6e-41 AT1G01790 660 / 0.0 K+ efflux antiporter 1, K+ EFFLUX ANTIPORTER 1, K+ efflux antiporter 1 (.1) Lus10018844 [exp] 156 / 9e-39 AT4G00630 1352 / 0.0 K+ efflux antiporter 2, K+ efflux antiporter 2 (.1), K+ efflux antiporter 2 (.2) Lus10040938 [exp] 139 / 1e-33 AT4G00630 928 / 0.0 K+ efflux antiporter 2, K+ efflux antiporter 2 (.1), K+ efflux antiporter 2 (.2) Lus10009830 [exp] 86 / 8e-17 AT4G00630 838 / 0.0 K+ efflux antiporter 2, K+ efflux antiporter 2 (.1), K+ efflux antiporter 2 (.2) Lus10009829 [exp] 65 / 4e-11 AT4G00630 372 / 3e-121 K+ efflux antiporter 2, K+ efflux antiporter 2 (.1), K+ efflux antiporter 2 (.2) Lus10040549 [exp] 66 / 1e-10 AT2G19600 851 / 0.0 K+ efflux antiporter 4, K+ efflux antiporter 4, K+ efflux antiporter 4 (.1) Lus10031106 [exp] 63 / 8e-10 AT5G51710 907 / 0.0 K+ efflux antiporter 5, ARABIDOPSIS THALIANA K+ EFFLUX ANTIPORTER 5, K+ efflux antiporter 5 (.1), K+ efflux antiporter 5 (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0064 [poplar] [flax] CPA_AT PF00999 [poplar] [flax] Na_H_Exchanger Sodium/hydrogen exchanger family CL0063 [poplar] [flax] NADP_Rossmann PF02254 [poplar] [flax] TrkA_N TrkA-N domain
Representative CDS sequence Show only first row Show all	>Potri.009G080800.2 pacid=42770801 polypeptide=Potri.009G080800.2.p locus=Potri.009G080800 ID=Potri.009G080800.2.v4.1 annot-version=v4.1 ATGCTGGAGTCAATCACTTGTTGTCACAGTCCCAAGGGGCACAATATTAGAAACAAATCAAGCCCAATCAGGGCATGCTCTCGTCATATATCACATTTTC ATGTACATTCTTTTAATGCTAGATTTTTCACAAAGCAGCCAACGCGCATGCCATCATGTGGCTTAAATTACTGGACTAGTCAATTCTCCTTTGTTTCGGG AAATATATTTGAAGGCAAATCTTTGTTAACTTCCAGATTGTGTGGTTCAAGAGGAATGTACATGTCCAGACAGAGATTGGGCCGTTGGGAAAGATCTCGA CTATGTGCAGCTGTTGATGTTGGTAGTGCCATAGACGTTATCAATGATTTAGGATTGGATACTTTGACATTCTTAGGTGTGACTGTCGTGGTTGTTCCTG TGTTCAAGACAATTAGAGCTAGTCCTATACTCGGTTTCTTCTTTGCTGGGATTGTACTCAATCAGTTTGGATTCATTCGAAATCTTACAGATGTTAAAGT ACTGTCTGAATGGGGGATACTTTTCTTGCTGTTTGAGATGGGTTTAGAGCTTTCACTTGCACGTCTAAAGGCACTTGCAAAATATGCCTTTGGCATGGGA TTGACTCAGGTTGTGTTATCAACTCTTGCTTTCACAGCATTTGAACTCCCACCAAATGGTGCTATTGGAACGAAAATTTTGGAGTTCCTTTTTCATTCCA GACCTGATTTGGTGAACATCAGAAGCATTGACGAGGCTGTTGTTATTGGTGCTGCTCTCTCTCTCTCTTCTTCAGCTTTTGTTCTGCAGCTTCTTGCAGA AAAGGGTGAGCTTCCTACAAGATTTGGCTCTGCAACTTTGGGAATACTTCTTTTACAGGACATAGCAGTTGTTCCTCTCTTGGTCATACTTCCTGTGCTA GAGAGCCAGAATCTGGTGGAGGAAAGTATTTGGCCAATGCTTGCCCAAGAAAGTTTAAAGGCTTTAGGTGGTCTTGGGTTGCTTTCTCTTGGGGGGAAAT ACCTTCTAAGGCGAGTGTTTGAGGTTGTTGCAGAAGCAAGGAGTTCGGAAGCATTTGTTGCTCTCTGCCTGCTAACAGTTGCTGGGACTTCTCTTCTAAC TCAGAAGTTGGGCTTTAGTGACACGCTGGGAGCATTTTTAGCGGGGGCATTGCTGGCAGAAACAAATTTCCGAACACAGATTGAAGCTGACATAAGGCCA TTTAGAGGCTTACTTCTTGGGTTATTTTTTGTGACTACAGGGACTTCAATTGACACGCAGCTCCTTTTTCGAGAATGGCCAAATATACTCTCTCTCTTGG CAGGTTTAATCGCCATCAAGACAATGATTATAACAGCAATAGGTCCTCGTGTTGGACTCACCTTGCAAGAAAGTGTAAGGATTGGATTGCTTCTATCTCA AGGAGGTGAATTTGCATTTGTTGTATTCTCTCTAGCTAACAGTCTGGGAGTGCTACCACTTGAGCTTAACAAGCTGCTCATAATTGTCGTTGTGTTGTCA ATGGCATTAACCCCATTGCTTAATGAAGTTGGAAGAAGAGCTGCTGAGTTCATTGAAGACAAGTTTGACACAGAAGATAAAGCTGCTGAGGTGAACTTCA ATGTTAGAGAACCTATTGTGATTGTTGGATTCGGACAAATGGGTCAGGTATTGGCCAATTTCTTGTCCGCCCCTTTGGCTTCTGGGATAGATGGCGGCTT TGTAGGGTGGCCTTATGTAGCTTTTGATTTGAATGTTTCTGTTGTCAAGGCATCCAGGAAACTTGGTTTTCCAATCCTTTATGGGGATGGTTCACTTCCA GCGGTATTGCAATCTGCTAGTATCTCTTCCCCGAAGGCTTTCATGATCATGTTTACAGGGAGGAGGAGGACAACTGAGGCTGTTCAAAGGCTTCGGCTTG CATTCCCTGTGATACCAATTTATGCCAGAGCTCAAGATCTCACCCATCTTTTAGAGCTAAAGAAAGCAGGCGCAACAGATGCTATATTGGAAAATGCGGA GATGAGCTTACAACTTGGCTCTAAGCTTTTGAAAGACTTTGGCGTCATGTCTGATGATGTGAACTTCTTGAGCCAACTTGTTCGAGAATCCATGGAGTTA CAAGCTCAAGAAGCACTCAGCAAAAATGATGCTCGAGAATTTGATATCACGAAACCATTTCAGGTAAGAGTTAGTGACTCAATCGGTGCCCAAGCACCTA TTCCATCAACCTCATCTGGATCCAAATCGTTAAGTATAAATCAGACAGATGAAAGTCATGTCTTGAGGTTTCAAGGGGAAGCAGATCAAGCAGCACATGA CAGTGAGCTCCAAGAACCAGAGGATTTGCAGGGAAAGGGTGTTTTATACTGTGAGCTAGATGGAGAAAATGGCTTTCCAGTTAGAACTGATGATGCCATG GTGGAGAAAAACGTGTTAGATCCATCAGCACCTTGCATGGCAACTACTGAGGATCCTTAA
AA sequence Show only first row Show all	>Potri.009G080800.2 pacid=42770801 polypeptide=Potri.009G080800.2.p locus=Potri.009G080800 ID=Potri.009G080800.2.v4.1 annot-version=v4.1 MLESITCCHSPKGHNIRNKSSPIRACSRHISHFHVHSFNARFFTKQPTRMPSCGLNYWTSQFSFVSGNIFEGKSLLTSRLCGSRGMYMSRQRLGRWERSR LCAAVDVGSAIDVINDLGLDTLTFLGVTVVVVPVFKTIRASPILGFFFAGIVLNQFGFIRNLTDVKVLSEWGILFLLFEMGLELSLARLKALAKYAFGMG LTQVVLSTLAFTAFELPPNGAIGTKILEFLFHSRPDLVNIRSIDEAVVIGAALSLSSSAFVLQLLAEKGELPTRFGSATLGILLLQDIAVVPLLVILPVL ESQNLVEESIWPMLAQESLKALGGLGLLSLGGKYLLRRVFEVVAEARSSEAFVALCLLTVAGTSLLTQKLGFSDTLGAFLAGALLAETNFRTQIEADIRP FRGLLLGLFFVTTGTSIDTQLLFREWPNILSLLAGLIAIKTMIITAIGPRVGLTLQESVRIGLLLSQGGEFAFVVFSLANSLGVLPLELNKLLIIVVVLS MALTPLLNEVGRRAAEFIEDKFDTEDKAAEVNFNVREPIVIVGFGQMGQVLANFLSAPLASGIDGGFVGWPYVAFDLNVSVVKASRKLGFPILYGDGSLP AVLQSASISSPKAFMIMFTGRRRTTEAVQRLRLAFPVIPIYARAQDLTHLLELKKAGATDAILENAEMSLQLGSKLLKDFGVMSDDVNFLSQLVRESMEL QAQEALSKNDAREFDITKPFQVRVSDSIGAQAPIPSTSSGSKSLSINQTDESHVLRFQGEADQAAHDSELQEPEDLQGKGVLYCELDGENGFPVRTDDAM VEKNVLDPSAPCMATTEDP

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G04850		ATKEA3, KEA3	K+ efflux antiporter 3, K+ eff...		Potri.009G080800 [exp]	0	1
AT3G23700			Nucleic acid-binding proteins ...		Potri.014G148500 [exp]	1.00	0.9862
AT1G31190		IMPL1	myo-inositol monophosphatase l...		Potri.012G120492 [exp]	2.44	0.9713
AT5G53580		AtPLR1	pyridoxal reductase 1, NAD(P)-...		Potri.015G006900 [exp]	2.82	0.9682
AT2G03390			uvrB/uvrC motif-containing pro...		Potri.010G161600 [exp]	3.46	0.9667
AT1G70580		GGT2, AOAT2	GLUTAMATE:GLYOXYLATE AMINOTRAN...		Potri.010G045100 [exp]	3.74	0.9738
AT4G39970			Haloacid dehalogenase-like hyd...		Potri.007G095200 [exp]	7.74	0.9568
AT3G55040		GSTL2	glutathione transferase lambda...		Potri.008G046800 [exp]	8.00	0.9389
AT5G13630		ABAR, CHLH, CCH...	ABA-BINDING PROTEIN, magnesium...		Potri.006G051100 [exp]	10.39	0.9625	Pt-GUN5.1
AT3G17930			unknown protein		Potri.015G036500 [exp]	11.40	0.9603
AT3G10840			alpha/beta-Hydrolases superfam...		Potri.013G092900 [exp]	11.87	0.9453

Compare expression of checked genes

Potri.009G080800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.