Plant FIBer expression Database

Potri.009G081100 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G64500 616 / 0 Major facilitator superfamily protein (.1)
AT2G22730 580 / 0 Major facilitator superfamily protein (.1)
AT5G65687 562 / 0 Major facilitator superfamily protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.001G286600
[exp]
803 / 0 AT5G64500 548 / 0.0 Major facilitator superfamily protein (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10019244
[exp]
610 / 0 AT2G22730 638 / 0.0 Major facilitator superfamily protein (.1)
Lus10011580
[exp]
598 / 0 AT5G64500 625 / 0.0 Major facilitator superfamily protein (.1)
Lus10003528
[exp]
502 / 1e-174 AT2G22730 495 / 8e-173 Major facilitator superfamily protein (.1)
Lus10002935
[exp]
343 / 2e-112 AT5G64500 340 / 7e-112 Major facilitator superfamily protein (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0015 MFS PF07690 MFS_1 Major Facilitator Superfamily
Representative CDS sequence
>Potri.009G081100.6 pacid=42770930 polypeptide=Potri.009G081100.6.p locus=Potri.009G081100 ID=Potri.009G081100.6.v4.1 annot-version=v4.1
ATGGCACAAGAAGATGAAGTCAAAGGAGCAAAAGTGTCATCCGAGGAAAACCCAAACCCATCAACAGTGGTCATAGAGATGGCAAGAAGTTCTACTGCAT
TATCACCTCCTGCCCCTTCATGGTTCACTCCAAAAAGGCTGCTAGTTATCTTTTGTGTGATCAACTTGATCAATTATGTGGATAGAGGAGCCATTGCAAG
CAATGGTGTCAATGGGAGTCGTAGAACCTGCTCAAAAAGTGGTACATGCACATTCGGCAGTGGAATACAGGGGGATTTTAACCTGAGCAATTTCGAAGAT
GGAGTTTTGTCCTCAGCTTTCATGGTTGGACTTCTCGTGGCTTGCCCAATATTTGCATCATTAGCAAAGAGCGTCAACCCATTTAGGCTCATTGGAGTTG
GATTATCAGTATGGACAGTTGCAGTAGTTGGGTGTGGTTTTTCATTTAATTTCTGGACCATTACAATTTGCCGCATGCTAGTCGGTGTCGGAGAGGCTTC
ATTTATAAGTCTGGCAGCCCCATTTATCGATGATAATGCCCCTGTTGCTAAGAAAACCTTATGGCTTGGAATATTTTACATGTGTATACCAACTGGATAT
GCTCTTGGCTATGTATATGGTGGATTGATTGGTGGTCATTTCAATTGGCGTTTCGCTTTCTATGGAGAGGCAATTTTGATGCTTCCATTTGCTGTTTTAG
GTTTTGTTATGAAACCTTTGCAGTTGAAAGGTTTTGCTCCTGCTGAATCTAAAAAAGCGCTGACATCCATAGAGACTGCTGTCTTGGAAGTTCAAGATGC
GGGCGTTTCTGTTGTCAAAGGCTCAATGAAATCTTCCAAGTCAAATTGTGCATTCATTGATTTGAAGCAATTCTCTAGATTTATGATAGACGTGAAAGTG
CTTTTGCTTGAGAAGGTTTATGTAGTGAATGTTTTAGGTTACATAGCATACAATTTCGTCATTGGTGCATATTCATATTGGGGGCCTAAAGCGGGTTATA
ACATTTATAATATGAGCAATGCAGATATGATATTTGGAGGGGTTACCATAGTCTGTGGTATAGTTGGCACAATAGGAGGGGGTTATGTTCTGGATCTCAT
CAATTCCACAATTTCCAATGCTTTTAAGCTTCTTTCAGCAGTAACATTTGTTGGGGCAATATTTTGCTTCAGTGCCTTCTGTTTTAAGAACATGTATGCC
TTCCTTGCTTTTTTCGCTATTGGTGAACTACTTGTCTTTGCAACTCAGGCTCCTGTAAATTATGTATGTCTTCATTGTGTTAAACCAAGTTTGAGACCAA
TATCTATGGCTATGTCCACCGTTGCAATTCACATCTTTGGAGATGTGCCTTCCTCACCACTTGTTGGTGTTCTCCAGGATCATATTGACAACTGGAGGAA
GACTGCTCTTATTCTGACGTCCATTTTGTTTCCAGCAGCTGTGATATGGTTTATAGGTATATTTCTACACGGTGTGGATAGATTTGATGAAGAAAGTGAG
CATCCTCAAGTGACTACAGCTGACAGGTCTAACACAATGCCTTTGCTTGATGGGAAGGCAGCAGGAGCAGCAGAAACTTTGGCAGAACCATAA
AA sequence
>Potri.009G081100.6 pacid=42770930 polypeptide=Potri.009G081100.6.p locus=Potri.009G081100 ID=Potri.009G081100.6.v4.1 annot-version=v4.1
MAQEDEVKGAKVSSEENPNPSTVVIEMARSSTALSPPAPSWFTPKRLLVIFCVINLINYVDRGAIASNGVNGSRRTCSKSGTCTFGSGIQGDFNLSNFED
GVLSSAFMVGLLVACPIFASLAKSVNPFRLIGVGLSVWTVAVVGCGFSFNFWTITICRMLVGVGEASFISLAAPFIDDNAPVAKKTLWLGIFYMCIPTGY
ALGYVYGGLIGGHFNWRFAFYGEAILMLPFAVLGFVMKPLQLKGFAPAESKKALTSIETAVLEVQDAGVSVVKGSMKSSKSNCAFIDLKQFSRFMIDVKV
LLLEKVYVVNVLGYIAYNFVIGAYSYWGPKAGYNIYNMSNADMIFGGVTIVCGIVGTIGGGYVLDLINSTISNAFKLLSAVTFVGAIFCFSAFCFKNMYA
FLAFFAIGELLVFATQAPVNYVCLHCVKPSLRPISMAMSTVAIHIFGDVPSSPLVGVLQDHIDNWRKTALILTSILFPAAVIWFIGIFLHGVDRFDEESE
HPQVTTADRSNTMPLLDGKAAGAAETLAEP

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT5G64500 Major facilitator superfamily ... Potri.009G081100
[exp]
0 1
AT4G04470 PMP22 Peroxisomal membrane 22 kDa (M... Potri.011G007100
[exp]
3.87 0.7243
AT2G30360 PKS5, CIPK11, S... SNF1-RELATED PROTEIN KINASE 3.... Potri.013G155600
[exp]
4.00 0.6799
AT5G54980 Uncharacterised protein family... Potri.010G208300
[exp]
4.47 0.6960
AT1G72160 Sec14p-like phosphatidylinosit... Potri.019G079500
[exp]
7.00 0.6561
AT1G34670 MYB ATMYB93 myb domain protein 93 (.1) Potri.002G096800
[exp]
7.54 0.6871
AT2G31570 ATGPX2 glutathione peroxidase 2 (.1) Potri.007G126600
[exp]
9.79 0.6729
AT4G10380 AtNIP5;1, NIP5;... NOD26-LIKE MIP 8, NOD26-LIKE M... Potri.001G455000
[exp]
11.95 0.6454
AT5G05170 IXR1, CEV1, ATH... ISOXABEN RESISTANT 1, CONSTIT... Potri.009G060800
[exp]
12.96 0.6401 CESA4.5
AT2G40810 ATATG18C homolog of yeast autophagy 18C... Potri.019G062800
[exp]
18.38 0.5977
AT5G56340 ATCRT1 RING/U-box superfamily protein... Potri.003G223200
[exp]
21.16 0.6299

Potri.009G081100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.