Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G37850 209 / 2e-65 bHLH bHLH025 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT2G22750 173 / 1e-51 bHLH bHLH018 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2) AT2G22760 169 / 3e-50 bHLH bHLH019 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT2G22770 158 / 9e-46 bHLH NAI1, bHLH020 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT2G46510 83 / 2e-17 bHLH ATAIB, bHLH107, bHLH017, INU1, JAM1, MYL1 ABA-inducible BHLH-type transcription factor (.1) AT1G32640 82 / 4e-17 bHLH JIN1, JAI1, ZBF1, RD22BP1, ATMYC2 JASMONATE INSENSITIVE 1, Basic helix-loop-helix (bHLH) DNA-binding family protein (.1) AT4G17880 82 / 8e-17 bHLH bHLH004, MYC4 Basic helix-loop-helix (bHLH) DNA-binding family protein (.1) AT4G29930 79 / 8e-17 bHLH bHLH027 basic helix-loop-helix (bHLH) DNA-binding superfamily protein AT5G57150 76 / 4e-16 bHLH bHLH035 basic helix-loop-helix (bHLH) DNA-binding superfamily protein AT1G01260 79 / 7e-16 bHLH bHLH013, INU4 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G287200 [exp] 576 / 0 AT4G37850 215 / 7e-68 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.005G095250 [exp] 226 / 3e-72 AT4G37850 213 / 5e-67 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.007G009400 [exp] 221 / 3e-69 AT4G37850 130 / 1e-34 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.002G172101 [exp] 90 / 1e-19 AT1G01260 526 / 0.0 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.3) Potri.014G099700 [exp] 89 / 2e-19 AT1G01260 556 / 0.0 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.3) Potri.005G208600 [exp] 85 / 8e-18 AT4G09820 296 / 2e-92 TRANSPARENT TESTA 8, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.002G054100 [exp] 79 / 8e-16 AT4G09820 317 / 6e-100 TRANSPARENT TESTA 8, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.002G042000 [exp] 78 / 1e-15 AT4G16430 475 / 4e-165 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.001G142200 [exp] 77 / 3e-15 AT1G32640 604 / 0.0 JASMONATE INSENSITIVE 1, Basic helix-loop-helix (bHLH) DNA-binding family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020503 [exp] 269 / 1e-89 AT4G37850 187 / 4e-58 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10012457 [exp] 265 / 6e-88 AT4G37850 188 / 2e-58 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10011578 [exp] 230 / 1e-73 AT4G37850 209 / 1e-65 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10003488 [exp] 230 / 8e-73 AT4G37850 212 / 6e-66 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10019247 [exp] 223 / 2e-70 AT4G37850 217 / 3e-68 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10039639 [exp] 202 / 2e-62 AT4G37850 191 / 3e-58 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10039640 [exp] 171 / 4e-50 AT4G37850 156 / 2e-44 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10000037 [exp] 91 / 3e-21 AT4G17880 300 / 3e-99 Basic helix-loop-helix (bHLH) DNA-binding family protein (.1) Lus10030970 [exp] 90 / 2e-19 AT1G32640 630 / 0.0 JASMONATE INSENSITIVE 1, Basic helix-loop-helix (bHLH) DNA-binding family protein (.1) Lus10042572 [exp] 84 / 5e-19 AT4G09820 156 / 1e-45 TRANSPARENT TESTA 8, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00010 [poplar] [flax] HLH Helix-loop-helix DNA-binding domain
Representative CDS sequence Show only first row Show all	>Potri.009G081400.1 pacid=42772538 polypeptide=Potri.009G081400.1.p locus=Potri.009G081400 ID=Potri.009G081400.1.v4.1 annot-version=v4.1 ATGGAGACTTCATCAATTACAGCTTTATATGAACTAGGAATGGAGGATCCAGGCTTCACCAACCAGTGGTACATGAACTCCCTTGATGATATCAGCTTAC TACCATTAGCTGCTGCTGCATTTGGAGAGAACGTACACCATCCTTTCTCTAACCAGAATTTCAACCTCAAAACCTCCATGGATAGTACTCCTACAAGCAT TAATGTCAGACCAACAAAACAAATGAAAACTTTTCATTTGTCAGACCCCCAATCTGCCTTTTCTCCTAACTTTCTTTCATTTGTCAATCCCAACCACGCA AATCAAATGGGATTGGTGAAGCCTAAAGAGGAGGCAGTATGTTCCAAAAGCATCAATAACTTCCCTTCTGACATGGTAGTTTCCCAAGATATCTTTGGGA GCCAAAACTATGTAATCAAGGGTTGCCAAGGACCTGAGAGGATTAGCACAAACACTCCTAGACTTTCTCAAAGTCAAGATCACATTATTGCAGAAAGGAA GCGGCGAGAGAAGCTTAGTCAACGATTCATAGCTCTATCTGCTGTAGTTCCTGGCCTGAAGAAGATGGACAAAGCTTCTGTTTTAGGAGATGCTATCAAG TACTTGAAACAACTGCAAGAGAAAGTTAAGACACTTGAGGAACAAACAAAAAGGAAAACCATGGAATCAGTGGTCATTGTGAAGAAATCTCATATCTATG TCGATGAGGGTGATGTCAACGCTTCCTCAGACGAGTCCAAAGGCCCTATTCATGAAACTTTGCCAGAAATTGAAGCAAGATTCTGTGACAAACATGTCCT CATAAGAATCCATTGTGAGAAAAGGAAAGGAGTTTTGGAGAAAACAGTGGCTGAAATTGAGAAACTCCACCTATCAGTAATCAATAGCAGTGTTCTCGCA TTTGGGACATCTGCTCTTCATGTTACTTTTATTGCACAGATGGATATCGACTTCAACATGTCATTGAAGGATCTAGTGAAGACTTTACGCTCAGCTTTCG AGTTCTTCATGTGA
AA sequence Show only first row Show all	>Potri.009G081400.1 pacid=42772538 polypeptide=Potri.009G081400.1.p locus=Potri.009G081400 ID=Potri.009G081400.1.v4.1 annot-version=v4.1 METSSITALYELGMEDPGFTNQWYMNSLDDISLLPLAAAAFGENVHHPFSNQNFNLKTSMDSTPTSINVRPTKQMKTFHLSDPQSAFSPNFLSFVNPNHA NQMGLVKPKEEAVCSKSINNFPSDMVVSQDIFGSQNYVIKGCQGPERISTNTPRLSQSQDHIIAERKRREKLSQRFIALSAVVPGLKKMDKASVLGDAIK YLKQLQEKVKTLEEQTKRKTMESVVIVKKSHIYVDEGDVNASSDESKGPIHETLPEIEARFCDKHVLIRIHCEKRKGVLEKTVAEIEKLHLSVINSSVLA FGTSALHVTFIAQMDIDFNMSLKDLVKTLRSAFEFFM

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G37850	bHLH	bHLH025	basic helix-loop-helix (bHLH) ...		Potri.009G081400 [exp]	0	1
AT1G07900	AS2	LBD1	LOB domain-containing protein ...		Potri.008G043900 [exp]	1.41	0.9309
AT5G52300		LTI65, RD29B	RESPONSIVE TO DESSICATION 29B,...		Potri.012G141300 [exp]	2.82	0.9121
AT4G18170	WRKY	ATWRKY28, WRKY2...	WRKY DNA-binding protein 28 (....		Potri.005G203200 [exp]	3.00	0.8976
AT3G18950			Transducin/WD40 repeat-like su...		Potri.009G109500 [exp]	5.29	0.8838
AT5G50360			unknown protein		Potri.015G091900 [exp]	6.70	0.8477
AT5G06760		AtLEA4-5, LEA4-...	Late Embryogenesis Abundant 4-...		Potri.016G046350 [exp]	7.34	0.8583
AT5G24080			Protein kinase superfamily pro...		Potri.012G034901 [exp]	8.36	0.8570
AT1G24020		MLP423	MLP-like protein 423 (.1.2)		Potri.016G046500 [exp]	11.83	0.8039
AT2G21490		LEA	dehydrin LEA (.1)		Potri.004G158500 [exp]	12.40	0.8460
AT5G05340			Peroxidase superfamily protein...		Potri.013G083600 [exp]	13.85	0.8428

Compare expression of checked genes

Potri.009G081400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.