Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G64510 515 / 0 TIN1 tunicamycin induced 1, unknown protein AT1G47310 51 / 8e-07 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G036300 [exp] 97 / 5e-22 AT1G47310 325 / 7e-109 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020502 [exp] 548 / 0 AT5G64510 555 / 0.0 tunicamycin induced 1, unknown protein Lus10012458 [exp] 543 / 0 AT5G64510 543 / 0.0 tunicamycin induced 1, unknown protein Lus10032753 [exp] 90 / 6e-19 AT1G06870 379 / 3e-125 plastidic type I signal peptidase 2A, Peptidase S24/S26A/S26B/S26C family protein (.1) Lus10011672 [exp] 88 / 1e-18 AT1G47310 312 / 7e-104 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.009G081500.1 pacid=42771346 polypeptide=Potri.009G081500.1.p locus=Potri.009G081500 ID=Potri.009G081500.1.v4.1 annot-version=v4.1 ATGGCAATCAAATCATCATGCCGCTACCTTACCTTAATTTCCCTCATATTCACAACTCTGTCCTTTACGGCAGCTCTGTTCTCCGCACCGGACATCAATT CCCCTCCCCATCCAAAAGCAATCTCCGATTTGAAGGAAGCGATTGTGAAGGGCTTAGGGTTTCAAGCGGATGAATTCAAGATATCTGGTTTTGATTTGAG AGACGCACTCGTGGGCCATTCGGTGGCATATGAATTTGATGTGGAAGTTGATAATAAGGTGTTTCCGTTCAAGTTATTGGAGGATGTGAATCGGTGGGAG TTTGTTGATTTACCTATTTTTAGAGTTGAAGACCCGATTAGACCCGGTGATGAAAACGGGTTGGTGGAGCAGAAAAAGGATGACAATGGATCGCCTGTTT TAGCTCCGTTTCAGCTTGCTGGACCCATGGAGATATGGATTCAGGATGCCAAAGATATGCGCATTTCATTGCCGCACGATGTTGATGCTGGTGTTTTGAA AAAAGTAATTTTAGCTGATGGCGCTGTGGTTACGGTGAAGGGTGCGAGATCAGTTAGTCTGCGTCACCCTTTTGATCTTCCATTGCCTCTAAATCGAACT CAATCTGGTTTTGCTTCTGGTCTTCTTGCCTTAGCTGAACAGCTACGTCGTGCCACTCGCTCTGAAGAAGCTCCCCCCCTCTCCCTGCGCATTGTTGGGC CCACGTCACTCACGTCTCCTTCCCCATCATCACAATCTTCCAATAACAGGCTCAAGCTGAAGCGCCTTGCTCCTGGACTTGTGGAACTATCCTTGCCTGC AAAATCCCAACCTGTTGATTCCCTCCCCGCTGTTGATTCAGAACGTGCTACAACTGTCCTTACTCCTAAACATTTCACTACAATGTGGCCATTTGTTTCT GTGAACGGCTCGAACTCAAATTTGGTTGGTTTCGAGAAATTGCTTGCCTCAGTTTTGGGGTCCAGGGCTAATAAGAAAGGTTACTTCAAGTTGTTGAAGG CAGATGTGTCAGCTCAGACATTTGTTAAGATAGGTTTTGGTGTTGAGAAGTTGTTGAAAGAAGGAGATGGACTTGATTTGGAGGCTGTTCCTTGGTGGAG GACGAAGCCTGAGAGTGTGAGGATGCATTTTGAGGTATTGGCTAAGGTTGATGGCCAAAAGGTTGTACCAGAGAGAGTGGTGCAGGTTAATCCTGTGATT ATAGAGGATACCGTGGCTCCTCATCTGCTTACAGGAAATGTGAGCATGTCCAGAACTCCTGCTGTTCACCCTCCTTCCAATCCTTTCACCACTTAA
AA sequence Show only first row Show all	>Potri.009G081500.1 pacid=42771346 polypeptide=Potri.009G081500.1.p locus=Potri.009G081500 ID=Potri.009G081500.1.v4.1 annot-version=v4.1 MAIKSSCRYLTLISLIFTTLSFTAALFSAPDINSPPHPKAISDLKEAIVKGLGFQADEFKISGFDLRDALVGHSVAYEFDVEVDNKVFPFKLLEDVNRWE FVDLPIFRVEDPIRPGDENGLVEQKKDDNGSPVLAPFQLAGPMEIWIQDAKDMRISLPHDVDAGVLKKVILADGAVVTVKGARSVSLRHPFDLPLPLNRT QSGFASGLLALAEQLRRATRSEEAPPLSLRIVGPTSLTSPSPSSQSSNNRLKLKRLAPGLVELSLPAKSQPVDSLPAVDSERATTVLTPKHFTTMWPFVS VNGSNSNLVGFEKLLASVLGSRANKKGYFKLLKADVSAQTFVKIGFGVEKLLKEGDGLDLEAVPWWRTKPESVRMHFEVLAKVDGQKVVPERVVQVNPVI IEDTVAPHLLTGNVSMSRTPAVHPPSNPFTT

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G64510		TIN1	tunicamycin induced 1, unknown...		Potri.009G081500 [exp]	0	1
AT1G01940			Cyclophilin-like peptidyl-prol...		Potri.002G149700 [exp]	3.31	0.9379
AT4G29330		DER1	DERLIN-1 (.1)		Potri.006G153000 [exp]	3.46	0.9495
AT3G08970		TMS1, ATERDJ3A	THERMOSENSITIVE MALE STERILE 1...		Potri.016G120000 [exp]	5.29	0.9611
AT3G25230		ROF1, ATFKBP62	FK506 BINDING PROTEIN 62, rota...		Potri.002G248300 [exp]	6.78	0.9275
AT4G22740			glycine-rich protein (.1.2)		Potri.003G115400 [exp]	9.32	0.9495
AT2G20560			DNAJ heat shock family protein...		Potri.011G057601 [exp]	12.64	0.9480
AT5G53000		TAP46	2A phosphatase associated prot...		Potri.012G016500 [exp]	13.03	0.9210
AT5G37670		HSP15.7CI	HSP20-like chaperones superfam...		Potri.017G130700 [exp]	14.14	0.9479
AT1G23100			GroES-like family protein (.1)		Potri.008G130500 [exp]	14.96	0.9447
AT2G15560			Putative endonuclease or glyco...		Potri.009G100600 [exp]	18.33	0.9277

Compare expression of checked genes

Potri.009G081500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.