Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G33680 736 / 0 AGD2 ABERRANT GROWTH AND DEATH 2, Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) AT2G13810 533 / 0 EDTS5, ALD1 eds two suppressor 5, AGD2-like defense response protein 1 (.1) AT5G53970 66 / 3e-11 TAT7 tyrosine aminotransferase 7, Tyrosine transaminase family protein (.1) AT2G22250 65 / 4e-11 ATAAT, AAT, MEE17 MATERNAL EFFECT EMBRYO ARREST 17, aspartate aminotransferase (.1.2.3) AT1G80360 65 / 4e-11 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) AT1G77670 56 / 3e-08 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) AT4G23600 48 / 8e-06 JR2, CORI3, TAT1 JASMONIC ACID RESPONSIVE 2, CORONATINE INDUCED 1, Tyrosine transaminase family protein (.1.2.3) AT1G17290 48 / 1e-05 ALAAT1 alanine aminotransferas (.1) AT1G72330 44 / 0.0001 ALAAT2 alanine aminotransferase 2 (.1.2.3) AT4G08040 44 / 0.0003 ACS11 1-aminocyclopropane-1-carboxylate synthase 11 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G115800 [exp] 587 / 0 AT2G13810 601 / 0.0 eds two suppressor 5, AGD2-like defense response protein 1 (.1) Potri.007G013200 [exp] 586 / 0 AT2G13810 644 / 0.0 eds two suppressor 5, AGD2-like defense response protein 1 (.1) Potri.002G091500 [exp] 565 / 0 AT2G13810 581 / 0.0 eds two suppressor 5, AGD2-like defense response protein 1 (.1) Potri.005G079200 [exp] 75 / 3e-14 AT2G22250 649 / 0.0 MATERNAL EFFECT EMBRYO ARREST 17, aspartate aminotransferase (.1.2.3) Potri.007G088426 [exp] 72 / 3e-13 AT2G22250 643 / 0.0 MATERNAL EFFECT EMBRYO ARREST 17, aspartate aminotransferase (.1.2.3) Potri.005G175400 [exp] 59 / 4e-09 AT1G77670 728 / 0.0 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) Potri.002G086000 [exp] 56 / 2e-08 AT1G77670 726 / 0.0 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) Potri.014G124100 [exp] 53 / 2e-07 AT1G77670 289 / 6e-94 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) Potri.017G014100 [exp] 51 / 1e-06 AT5G53970 528 / 0.0 tyrosine aminotransferase 7, Tyrosine transaminase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035646 [exp] 734 / 0 AT4G33680 723 / 0.0 ABERRANT GROWTH AND DEATH 2, Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) Lus10010748 [exp] 727 / 0 AT4G33680 724 / 0.0 ABERRANT GROWTH AND DEATH 2, Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) Lus10020959 [exp] 536 / 0 AT2G13810 587 / 0.0 eds two suppressor 5, AGD2-like defense response protein 1 (.1) Lus10000205 [exp] 122 / 4e-33 AT4G33680 120 / 5e-33 ABERRANT GROWTH AND DEATH 2, Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) Lus10032388 [exp] 81 / 4e-16 AT2G22250 681 / 0.0 MATERNAL EFFECT EMBRYO ARREST 17, aspartate aminotransferase (.1.2.3) Lus10023080 [exp] 79 / 1e-15 AT2G22250 683 / 0.0 MATERNAL EFFECT EMBRYO ARREST 17, aspartate aminotransferase (.1.2.3) Lus10017934 [exp] 63 / 1e-10 AT5G53970 619 / 0.0 tyrosine aminotransferase 7, Tyrosine transaminase family protein (.1) Lus10013676 [exp] 61 / 2e-09 AT5G53970 617 / 0.0 tyrosine aminotransferase 7, Tyrosine transaminase family protein (.1) Lus10014710 [exp] 58 / 6e-09 AT1G77670 680 / 0.0 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) Lus10017703 [exp] 57 / 2e-08 AT2G20610 486 / 1e-170 SUPERROOT 1, ROOTY 1, ROOTY, HOOKLESS 3, ABERRANT LATERAL ROOT FORMATION 1, Tyrosine transaminase family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0061 [poplar] [flax] PLP_aminotran PF00155 [poplar] [flax] Aminotran_1_2 Aminotransferase class I and II
Representative CDS sequence Show only first row Show all	>Potri.009G082100.1 pacid=42772643 polypeptide=Potri.009G082100.1.p locus=Potri.009G082100 ID=Potri.009G082100.1.v4.1 annot-version=v4.1 ATGTCGCCGACGCAACTTTTATCGACTTCGATTTCTTCTTCTTCCTCTGCTTTTTTAGCCGCACCTATTGCCTTCAAAGCTAGAAACCAGAATGTTTCGA TCGCGTCGAAAACGCCTTCTATTTGCACGTGTGCTGCTGCTCCTCAAGAACAGAAAACCGTTTACAAAACACAAGTCTCCCGCAATGCAAATATTGCAAA GCTTCAAGCTGGTTACTTATTTCCAGAGGTTGCTCGAAGGAGGAATGCGCACATGCTGAAATACCCTGATGCAAAAGTGATAAGCCTTGGAATTGGTGAC ACTACAGAACCTATCCCAGAAGTTATAACTTCTGCAATAGCAAAGAGAGCAGAAGCACTGTCTACTTTGGAGGGTTACAGTGGTTATGGACCTGAACAAG GTGAAAAACCTTTGAGAACTGCAATTGCTTCAACATTTTATTCAGGTCTTGGGATCGAGGAGGATGATATATTTGTCTCTGATGGTGCCAAATGTGACAT ATCTCGCCTCCAGATGGTATTTGGGGCAAATGTAACCATGGCAGTGCAAGATCCATCATACCCGGCTTATGTTGATTCTAGTGTCATCATGGGCCAGACT GGACAGTTTCAGAAAGACGTTGAGAAGTACGGTAAGATTGAATACATGAGGTGCACTCCAGAGAATGGTTTTTTCCCTGATTTATCCAAAGTTTCTCGAA CGGATATCATATTTTTCTGTTCACCGAACAATCCTACTGGTTCTGCTGCAACAAGGGAGCAACTGACCCTACTAGTACAATTTGCAAAGGACAATGGATC AATCATCGTCTATGATTCAGCATATGCCATGTATATGTCTGATGATAACCCACGATCCATATTTGAAATTCCGGGAGCCAAAGAGGTTGCTTTGGAGACA TCATCTTTTAGTAAGTATGCTGGGTTTACTGGAGTTCGTCTGGGGTGGACTGTTGTTCCAAAACAGCTTCTATATTCTGATGGGTTCCCAGTTGTAAAGG ATTTCAACCGTGTTGTTTGCACTAGCTTTAATGGGGCATCCAACATTTGCCAAGCTGGTGGTCGGGCTTGCCTTTCACCTGAAGGCCTTAAGGCAATGAG TGAGGTGATTGGATTCTATAAAGAAAACTCCAACATTATAATGGATACATTCAATTCGCTCGGTTTTAATGTATATGGAGGAAAGAATGCTCCCTATGTG TGGGTTCACTTCCCTGGCCAAAGCTCGTGGGATGTTTTCAGTGAAATTCTTGAGAAAACTCATGTAGTTACCACACCTGGGAGTGGTTTTGGACCTGGTG GGGAAGGTTTTGTCAGAGTCAGTGCTTTTGGCCACAGGGAAAATGTTTTAGAAGCCTGCAGAAGATTCAAGCAGCTTTACAATTGA
AA sequence Show only first row Show all	>Potri.009G082100.1 pacid=42772643 polypeptide=Potri.009G082100.1.p locus=Potri.009G082100 ID=Potri.009G082100.1.v4.1 annot-version=v4.1 MSPTQLLSTSISSSSSAFLAAPIAFKARNQNVSIASKTPSICTCAAAPQEQKTVYKTQVSRNANIAKLQAGYLFPEVARRRNAHMLKYPDAKVISLGIGD TTEPIPEVITSAIAKRAEALSTLEGYSGYGPEQGEKPLRTAIASTFYSGLGIEEDDIFVSDGAKCDISRLQMVFGANVTMAVQDPSYPAYVDSSVIMGQT GQFQKDVEKYGKIEYMRCTPENGFFPDLSKVSRTDIIFFCSPNNPTGSAATREQLTLLVQFAKDNGSIIVYDSAYAMYMSDDNPRSIFEIPGAKEVALET SSFSKYAGFTGVRLGWTVVPKQLLYSDGFPVVKDFNRVVCTSFNGASNICQAGGRACLSPEGLKAMSEVIGFYKENSNIIMDTFNSLGFNVYGGKNAPYV WVHFPGQSSWDVFSEILEKTHVVTTPGSGFGPGGEGFVRVSAFGHRENVLEACRRFKQLYN

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G33680		AGD2	ABERRANT GROWTH AND DEATH 2, P...		Potri.009G082100 [exp]	0	1
AT5G35360		CAC2	acetyl Co-enzyme a carboxylase...		Potri.006G078200 [exp]	1.41	0.8289	Pt-ACCC.2
AT5G60390			GTP binding Elongation factor ...		Potri.010G218800 [exp]	2.00	0.8623
AT5G09570			Cox19-like CHCH family protein...		Potri.009G078100 [exp]	3.87	0.7889
AT5G60390			GTP binding Elongation factor ...		Potri.010G218600 [exp]	4.89	0.8019
AT5G11880			Pyridoxal-dependent decarboxyl...		Potri.009G119300 [exp]	6.63	0.7930
AT1G08580			unknown protein		Potri.019G049300 [exp]	9.16	0.7802
AT5G63890		HISN8, ATHDH	HISTIDINE BIOSYNTHESIS 8, hist...		Potri.001G465300 [exp]	9.48	0.7753
AT5G60390			GTP binding Elongation factor ...		Potri.010G219500 [exp]	10.81	0.7763
AT4G13850		ATGRP2, GR-RBP2	glycine rich protein 2, glycin...		Potri.017G059000 [exp]	13.85	0.7777
AT5G44200		ATCBP20, CBP20	CAP-binding protein 20 (.1.2)		Potri.007G137400 [exp]	14.24	0.7273

Compare expression of checked genes

Potri.009G082100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.