Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G49720 394 / 5e-140 unknown protein AT5G65810 389 / 4e-138 CGR3 cotton Golgi-related 3, unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G288200 [exp] 486 / 2e-176 AT3G49720 342 / 1e-119 unknown protein Potri.002G114000 [exp] 363 / 8e-128 AT5G65810 364 / 2e-128 cotton Golgi-related 3, unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011564 [exp] 396 / 6e-141 AT3G49720 422 / 4e-151 unknown protein Lus10019279 [exp] 395 / 1e-140 AT3G49720 421 / 7e-151 unknown protein Lus10039648 [exp] 375 / 1e-132 AT3G49720 405 / 2e-144 unknown protein Lus10007228 [exp] 368 / 1e-129 AT3G49720 401 / 6e-143 unknown protein Lus10032796 [exp] 337 / 3e-117 AT3G49720 337 / 7e-118 unknown protein Lus10012481 [exp] 332 / 2e-115 AT3G49720 332 / 1e-115 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.009G082400.6 pacid=42772485 polypeptide=Potri.009G082400.6.p locus=Potri.009G082400 ID=Potri.009G082400.6.v4.1 annot-version=v4.1 ATGTCGAGGAGGCCAGGGAATCCTGCCAGACGTTTGGCTGATGGAGGAAGTCTTCCTTTTGCTGGGTCGATGCATTCTAAATCGCGTTCGTCGCCGTTAC TATCCATTGGCCTTGTTGTCGTGGGCGCGATTCTTCTTATTGGATACTGTTACAGTGGCTCAGGTGGGCATATCACCAATAGAGAAGCTTTAAGTAAGAC AGAAGGTGGTGTTTCTTGCACACTAGAAGTCCAAAGAGCGATACCTTTTCTGAAGAAGGCTTATGGTGACAGCATGCGTAAAGTACTGCATGTAGGCCCG GACACTTGTTCTGCAGTATCAAGCTTATTAAAAGAAGAGGATACCGAGGCCTGGGGTGTGGAGCCATATGACTTAGATGATGTGAGTGCCAACTGCAAGA GTCTTGTGCGCAAAGGCCTTGTGCGTGTAGCTGATATCAAATTTCCTCTGCCCTACCGGCCAAAATCATTCTCTCTTGTTATAGTGTCAGATGCGTTGGA TTACTTGTCTCCAAAATATCTCAACAAAACACTTCCAGAATTGGCAAGGGTGTCTGCTGATGGCCTAGTTGTATTTTCTGGCGCTCCAGGTCAGCAAAGA GTTAAAGTTGCAGAGTTGTCTAAGTTTGGTCGTCCGGCCAAATTCCGGACCTCAACATGGTGGATAAGGTACTTTGTTCAGACTGGTTTACAAGAGAATG AATCTGCCTTAAAGAAGTTTGAGCAGGCGGCATTGAAGAAGTCATATAAGCCAGCCTGCCAAGTTTTCCACCTCCAGTCATATGATTGA
AA sequence Show only first row Show all	>Potri.009G082400.6 pacid=42772485 polypeptide=Potri.009G082400.6.p locus=Potri.009G082400 ID=Potri.009G082400.6.v4.1 annot-version=v4.1 MSRRPGNPARRLADGGSLPFAGSMHSKSRSSPLLSIGLVVVGAILLIGYCYSGSGGHITNREALSKTEGGVSCTLEVQRAIPFLKKAYGDSMRKVLHVGP DTCSAVSSLLKEEDTEAWGVEPYDLDDVSANCKSLVRKGLVRVADIKFPLPYRPKSFSLVIVSDALDYLSPKYLNKTLPELARVSADGLVVFSGAPGQQR VKVAELSKFGRPAKFRTSTWWIRYFVQTGLQENESALKKFEQAALKKSYKPACQVFHLQSYD

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G49720			unknown protein		Potri.009G082400 [exp]	0	1
AT3G42050			vacuolar ATP synthase subunit ...		Potri.013G078700 [exp]	1.00	0.9541
AT3G05520			Subunits of heterodimeric acti...		Potri.013G017000 [exp]	2.00	0.9398
AT1G63000		UER1, NRS/ER	"UDP-4-KETO-6-DEOXY-D-GLUCOSE-...		Potri.003G120000 [exp]	3.60	0.9262
AT3G09800			SNARE-like superfamily protein...		Potri.001G197200 [exp]	3.74	0.9438
AT4G01100		ADNT1	adenine nucleotide transporter...		Potri.002G168100 [exp]	4.35	0.9215
AT3G13410			unknown protein		Potri.001G000900 [exp]	4.89	0.9378
AT1G22520			Domain of unknown function (DU...		Potri.019G079101 [exp]	6.00	0.9268
AT1G04430			S-adenosyl-L-methionine-depend...		Potri.002G036800 [exp]	7.93	0.9203
AT5G59410			Rab5-interacting family protei...		Potri.009G032100 [exp]	9.48	0.9295
AT1G26940			Cyclophilin-like peptidyl-prol...		Potri.010G012900 [exp]	9.48	0.9379

Compare expression of checked genes

Potri.009G082400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.