Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G14530 563 / 0 TBL13 TRICHOME BIREFRINGENCE-LIKE 13 (.1) AT5G64470 296 / 3e-97 TBL12 TRICHOME BIREFRINGENCE-LIKE 12, Plant protein of unknown function (DUF828) (.1), Plant protein of unknown function (DUF828) (.2), Plant protein of unknown function (DUF828) (.3) AT3G62390 159 / 6e-44 TBL6 TRICHOME BIREFRINGENCE-LIKE 6 (.1) AT5G20590 159 / 6e-44 TBL5 TRICHOME BIREFRINGENCE-LIKE 5 (.1) AT3G28150 152 / 8e-42 AXY4L, TBL22 ALTERED XYLOGLUCAN 4-LIKE, TRICHOME BIREFRINGENCE-LIKE 22 (.1) AT1G60790 153 / 2e-41 TBL2 TRICHOME BIREFRINGENCE-LIKE 2, Plant protein of unknown function (DUF828) (.1) AT3G11570 148 / 4e-40 TBL8 TRICHOME BIREFRINGENCE-LIKE 8 (.1) AT3G12060 150 / 5e-40 TBL1 TRICHOME BIREFRINGENCE-LIKE 1, Plant protein of unknown function (DUF828) (.1) AT5G15900 147 / 1e-39 TBL19 TRICHOME BIREFRINGENCE-LIKE 19 (.1) AT1G70230 142 / 6e-38 AXY4, TBL27 ALTERED XYLOGLUCAN 4, TRICHOME BIREFRINGENCE-LIKE 27 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G286100 [exp] 288 / 2e-94 AT5G64470 550 / 0.0 TRICHOME BIREFRINGENCE-LIKE 12, Plant protein of unknown function (DUF828) (.1), Plant protein of unknown function (DUF828) (.2), Plant protein of unknown function (DUF828) (.3) Potri.002G195800 [exp] 172 / 4e-48 AT3G62390 593 / 0.0 TRICHOME BIREFRINGENCE-LIKE 6 (.1) Potri.004G105600 [exp] 162 / 2e-45 AT5G15900 411 / 5e-142 TRICHOME BIREFRINGENCE-LIKE 19 (.1) Potri.004G105700 [exp] 153 / 5e-42 AT5G15900 530 / 0.0 TRICHOME BIREFRINGENCE-LIKE 19 (.1) Potri.006G071500 [exp] 153 / 1e-41 AT5G20590 633 / 0.0 TRICHOME BIREFRINGENCE-LIKE 5 (.1) Potri.016G074800 [exp] 148 / 3e-40 AT3G11570 506 / 2e-179 TRICHOME BIREFRINGENCE-LIKE 8 (.1) Potri.018G133000 [exp] 149 / 6e-40 AT5G20590 606 / 0.0 TRICHOME BIREFRINGENCE-LIKE 5 (.1) Potri.002G054400 [exp] 146 / 3e-39 AT3G06080 560 / 0.0 TRICHOME BIREFRINGENCE-LIKE 10, Plant protein of unknown function (DUF828) (.1), Plant protein of unknown function (DUF828) (.2) Potri.017G110200 [exp] 143 / 2e-38 AT5G15900 419 / 2e-144 TRICHOME BIREFRINGENCE-LIKE 19 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012477 [exp] 603 / 0 AT2G14530 558 / 0.0 TRICHOME BIREFRINGENCE-LIKE 13 (.1) Lus10007108 [exp] 302 / 1e-99 AT5G64470 553 / 0.0 TRICHOME BIREFRINGENCE-LIKE 12, Plant protein of unknown function (DUF828) (.1), Plant protein of unknown function (DUF828) (.2), Plant protein of unknown function (DUF828) (.3) Lus10020489 [exp] 299 / 2e-98 AT5G64470 545 / 0.0 TRICHOME BIREFRINGENCE-LIKE 12, Plant protein of unknown function (DUF828) (.1), Plant protein of unknown function (DUF828) (.2), Plant protein of unknown function (DUF828) (.3) Lus10002430 [exp] 168 / 4e-47 AT3G62390 531 / 0.0 TRICHOME BIREFRINGENCE-LIKE 6 (.1) Lus10034087 [exp] 153 / 5e-42 AT5G15890 490 / 1e-172 TRICHOME BIREFRINGENCE-LIKE 21 (.1) Lus10003061 [exp] 151 / 3e-41 AT5G15900 488 / 5e-172 TRICHOME BIREFRINGENCE-LIKE 19 (.1) Lus10029188 [exp] 147 / 2e-39 AT1G70230 461 / 5e-161 ALTERED XYLOGLUCAN 4, TRICHOME BIREFRINGENCE-LIKE 27 (.1) Lus10011932 [exp] 146 / 3e-39 AT5G20590 543 / 0.0 TRICHOME BIREFRINGENCE-LIKE 5 (.1) Lus10024167 [exp] 145 / 4e-39 AT5G15900 381 / 3e-130 TRICHOME BIREFRINGENCE-LIKE 19 (.1) Lus10027637 [exp] 145 / 1e-38 AT5G20590 540 / 0.0 TRICHOME BIREFRINGENCE-LIKE 5 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0264 [poplar] [flax] SGNH_hydrolase PF13839 [poplar] [flax] PC-Esterase GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p CL0264 [poplar] [flax] PF14416 [poplar] [flax] PMR5N PMR5 N terminal Domain
Representative CDS sequence Show only first row Show all	>Potri.009G082500.1 pacid=42772007 polypeptide=Potri.009G082500.1.p locus=Potri.009G082500 ID=Potri.009G082500.1.v4.1 annot-version=v4.1 ATGGCCACAAAAGACCAGCAGCCCAAAAAACTCCCACTCTTTCCCTTGCTCTCTCTCCTCTGCTTCGCCTCCATCTTCCTCGCTCTCTCCCTCTCCCTCT CCAAAAGAGCCTCAATCTCTAACGAAACCATCCATTTCAGATCCACCCCAACACTAACCTCCACTCCCTGCAATTACTCTCATGGTTCCTGGATCTACGA CCCAAATTGGATACCCAACAAATATGACAGTACATGTAAAGAAATATTCAAAGGTTGGAATTGCATTGCTGGCAATAAATCAAATGCTAAAGACATCATT AAGTGGCGATGGCAGCCTAACGGGTGTGATCTCCCTCCCTCCGACCCGGTCCGGTTCTTGCAGACCTTTAGAGACACCAGCATCGGATTTGTTGGGGACT CGTTGAATAGGAATATGTTTGTTTCTCTCTTTTGCTCTCTAAAAAGGGTGTCAAGTGATGTGAAAAAGTGGAGACCAGCTGGGGCTGATCGTGGCTTTAC TTTTCTTCTCTATAATCTTACCATTGCTTATCATCGCACTAATCTTTTAGCGCGATATGGTAGGTGGTCAGCTAATGCTAATGGGGGTGAGTTGGAATCT CTTGGATATAAAGAGGGTTATAGAGTTGATGTTGATATTCCAGAAGGCACATGGGCGGATGCTCCGAGCTTCCATGATGTTCTAATCTTCAACACAGGAC ACTGGTGGTGGGCTCCCTCAAAGTTTGATCCTGTGAAATCTCCCATGCTTTTCTTTGAAAAGAACCAGCCTCTGATCCCTCCAGTGCTTCCTGCTGTTGG CCTGGACAAGGTTTTGAAACACGTGATTCTCTTTGTTGAGAGAAGAATGCGTCCGGGTGGAATCAAGCTCTTTCGTACACAATCACCTAGACATTTTGAA GGAGGTGATTGGGATCAAGGTGGTTCTTGCCCACGACTACAGCCTTTGTCACCTGAAAAAGTTGAAGAACTCTTCTCTCTAAAGAATAATGGGACAAATG TTGAATCCCGTCTGGTTAATCAGCACCTGTTCAAGGCTCTCAAGGGGTCTACATTCCATGTTTTGGACATAACCCACATGAGTGAGTTCAGAGCAGATGC TCATCCGGCAACAGCAGGTGGAAAGAAACACGATGACTGCATGCACTGGTGCTTGCCAGGAGTTACGGATATTTGGAATGACTTATTCATAATGCATCTA AACAGTATTAAGGCTAGAAACTGA
AA sequence Show only first row Show all	>Potri.009G082500.1 pacid=42772007 polypeptide=Potri.009G082500.1.p locus=Potri.009G082500 ID=Potri.009G082500.1.v4.1 annot-version=v4.1 MATKDQQPKKLPLFPLLSLLCFASIFLALSLSLSKRASISNETIHFRSTPTLTSTPCNYSHGSWIYDPNWIPNKYDSTCKEIFKGWNCIAGNKSNAKDII KWRWQPNGCDLPPSDPVRFLQTFRDTSIGFVGDSLNRNMFVSLFCSLKRVSSDVKKWRPAGADRGFTFLLYNLTIAYHRTNLLARYGRWSANANGGELES LGYKEGYRVDVDIPEGTWADAPSFHDVLIFNTGHWWWAPSKFDPVKSPMLFFEKNQPLIPPVLPAVGLDKVLKHVILFVERRMRPGGIKLFRTQSPRHFE GGDWDQGGSCPRLQPLSPEKVEELFSLKNNGTNVESRLVNQHLFKALKGSTFHVLDITHMSEFRADAHPATAGGKKHDDCMHWCLPGVTDIWNDLFIMHL NSIKARN

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G14530		TBL13	TRICHOME BIREFRINGENCE-LIKE 13...		Potri.009G082500 [exp]	0	1
AT1G13180		ATARP3, DIS1	DISTORTED TRICHOMES 1, ARABIDO...		Potri.010G051500 [exp]	27.87	0.7743	ARP3.2
AT1G43580			Sphingomyelin synthetase famil...		Potri.005G193300 [exp]	32.31	0.7741
AT1G43580			Sphingomyelin synthetase famil...		Potri.002G066900 [exp]	37.33	0.7455
AT2G27730			copper ion binding (.1)		Potri.004G201700 [exp]	89.44	0.7089
AT5G62580			ARM repeat superfamily protein...		Potri.012G074400 [exp]	98.38	0.7278
AT5G47030			ATPase, F1 complex, delta/epsi...		Potri.014G053000 [exp]	113.92	0.7168	Pt-PPFRU36.1
AT1G35780			unknown protein		Potri.002G095300 [exp]	118.03	0.7041
AT1G04430			S-adenosyl-L-methionine-depend...		Potri.005G226000 [exp]	142.76	0.7041
AT1G30440			Phototropic-responsive NPH3 fa...		Potri.001G357100 [exp]	172.64	0.6725
AT5G67210		IRX15-L	IRX15-LIKE, Protein of unknown...		Potri.001G302600 [exp]	201.32	0.6914

Compare expression of checked genes

Potri.009G082500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.