Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G10070 446 / 2e-156 ATBCAT-2 branched-chain amino acid transaminase 2 (.1.2.3) AT1G50110 421 / 3e-147 D-aminoacid aminotransferase-like PLP-dependent enzymes superfamily protein (.1) AT5G65780 410 / 6e-142 ATBCAT-5 branched-chain amino acid aminotransferase 5 / branched-chain amino acid transaminase 5 (BCAT5) (.1), branched-chain amino acid aminotransferase 5 / branched-chain amino acid transaminase 5 (BCAT5) (.2) AT3G49680 408 / 5e-141 ATBCAT-3 ,BCAT3 branched-chain aminotransferase 3 (.1.2) AT1G50090 405 / 9e-141 D-aminoacid aminotransferase-like PLP-dependent enzymes superfamily protein (.1) AT1G10060 400 / 2e-138 ATBCAT-1 branched-chain amino acid transaminase 1 (.1.2.3) AT3G19710 375 / 6e-129 BCAT4 branched-chain aminotransferase4 (.1) AT5G27410 75 / 2e-14 D-aminoacid aminotransferase-like PLP-dependent enzymes superfamily protein (.1.2) AT3G05190 66 / 3e-11 D-aminoacid aminotransferase-like PLP-dependent enzymes superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G113600 [exp] 439 / 9e-154 AT1G10070 555 / 0.0 branched-chain amino acid transaminase 2 (.1.2.3) Potri.009G082600 [exp] 431 / 1e-150 AT1G50110 448 / 4e-158 D-aminoacid aminotransferase-like PLP-dependent enzymes superfamily protein (.1) Potri.007G008000 [exp] 412 / 2e-142 AT5G65780 578 / 0.0 branched-chain amino acid aminotransferase 5 / branched-chain amino acid transaminase 5 (BCAT5) (.1), branched-chain amino acid aminotransferase 5 / branched-chain amino acid transaminase 5 (BCAT5) (.2) Potri.005G039100 [exp] 70 / 8e-13 AT5G27410 882 / 0.0 D-aminoacid aminotransferase-like PLP-dependent enzymes superfamily protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032806 [exp] 410 / 3e-143 AT1G10070 484 / 1e-172 branched-chain amino acid transaminase 2 (.1.2.3) Lus10011567 [exp] 404 / 2e-139 AT3G49680 615 / 0.0 branched-chain aminotransferase 3 (.1.2) Lus10019258 [exp] 402 / 1e-138 AT3G49680 613 / 0.0 branched-chain aminotransferase 3 (.1.2) Lus10007247 [exp] 390 / 5e-134 AT1G10070 517 / 0.0 branched-chain amino acid transaminase 2 (.1.2.3) Lus10011604 [exp] 386 / 2e-132 AT3G49680 568 / 0.0 branched-chain aminotransferase 3 (.1.2) Lus10028246 [exp] 388 / 5e-131 AT1G10070 498 / 3e-174 branched-chain amino acid transaminase 2 (.1.2.3) Lus10028247 [exp] 364 / 4e-125 AT1G10070 469 / 6e-168 branched-chain amino acid transaminase 2 (.1.2.3) Lus10007246 [exp] 221 / 9e-70 AT3G49680 327 / 6e-111 branched-chain aminotransferase 3 (.1.2) Lus10035342 [exp] 59 / 3e-09 AT5G27410 910 / 0.0 D-aminoacid aminotransferase-like PLP-dependent enzymes superfamily protein (.1.2) Lus10029984 [exp] 54 / 2e-07 AT5G27410 869 / 0.0 D-aminoacid aminotransferase-like PLP-dependent enzymes superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01063 [poplar] [flax] Aminotran_4 Amino-transferase class IV
Representative CDS sequence Show only first row Show all	>Potri.009G082700.2 pacid=42772454 polypeptide=Potri.009G082700.2.p locus=Potri.009G082700 ID=Potri.009G082700.2.v4.1 annot-version=v4.1 ATGGCTTCATCAACCTCAGGCCCAAAAAAAGTGCTGTCAAGGTTCCGCCAAGTCGTTGGGCTATTGCTTCCGCATTCGAAATCTACACCACCACCTGTTA GCAGTACTGATGATGACAAAGTGACCACTGATGATCACCAAGTGAGTACTGATGATCACAAAGTGAGTACTGATGAGAAAGTGAAGTCTGGTGGTGAAGA TATCAATTGGGATAATGTTGGTTTTGGTCTAACTCCCACGGATTTCATGTTCTTAATGAAATGCCCTGTTGGAGACAAATATTCAGAAGGACACCTTGTT CCCTATGGAAATCTTGAGATAAGCCCATCCTCTTCAGTGTTAAACTACGGACAGGGATTGTTTGAAGGGATGAAAGTATATAGGAGAGAAGATGACAGAA TCATGATCTTTAGGCCAGAAGAAAATGCTCGACGCATGCAAATGGGAGCAGAGAGACTGCTGATGCAAGCACCAACGACCGAGCAATTTATTGATGCTGT GAAGAAAACTGCCCTTGCAAACGAGCGTTGGGTGCCTCCCCATGGGACGGGAACATTGTACCTGAGGCCTTTGCTAATGGGAAGTGGAGCTGTTTTGGGT ATTGGACCAGCTCCTGAATGCACATTCCTTATCTTTGCATCTCCTATCCGCAACTCTTACAAGAGTGGGATCGACGCCTTTAACTTGTCTATCGAGACCA AACTTCATCGAGCTTCCCCTGGTGGAACTGGAGGTATCAAAAGCATTACCAACTATGCTCCGGTTTTTGAATCAGTGAAGCGAGCGAAGGCTGCAGGGTT TGATGATGTCCTGTTCTTGGATGGAGAAACTGGAAAGCATATTGAAGAGGCTTCTTCGTGTAATGTTTTCATGTTGAAGGGTAATGTCATTTCAACCCCC ACCATACTCGGGACAATTTTGCCTGGAATTACTAGAAAAAGCATCCTGGAGATTGCTCAAGATTGTGGTTATGAGGTCGAAGAAGGACGTATTCCAGTTG AGGATGTGCTTGCTGCGGATGAGGTATTTTGCACAGGAACTGCAGTTGTAGTCACTTCTGTTGCCAGCATAACCTATCAGGAACAAAGGGTGGAATATAA AACAGGAGAGAACACAGTGTGTCACGAACTGCGAACAGCCCTTACAGGAATTCAAACTGGACTTGTTGAGGACAAGAAGGGATGGACTGTCCACCTTAAT TAA
AA sequence Show only first row Show all	>Potri.009G082700.2 pacid=42772454 polypeptide=Potri.009G082700.2.p locus=Potri.009G082700 ID=Potri.009G082700.2.v4.1 annot-version=v4.1 MASSTSGPKKVLSRFRQVVGLLLPHSKSTPPPVSSTDDDKVTTDDHQVSTDDHKVSTDEKVKSGGEDINWDNVGFGLTPTDFMFLMKCPVGDKYSEGHLV PYGNLEISPSSSVLNYGQGLFEGMKVYRREDDRIMIFRPEENARRMQMGAERLLMQAPTTEQFIDAVKKTALANERWVPPHGTGTLYLRPLLMGSGAVLG IGPAPECTFLIFASPIRNSYKSGIDAFNLSIETKLHRASPGGTGGIKSITNYAPVFESVKRAKAAGFDDVLFLDGETGKHIEEASSCNVFMLKGNVISTP TILGTILPGITRKSILEIAQDCGYEVEEGRIPVEDVLAADEVFCTGTAVVVTSVASITYQEQRVEYKTGENTVCHELRTALTGIQTGLVEDKKGWTVHLN

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G10070		ATBCAT-2	branched-chain amino acid tran...		Potri.009G082700 [exp]	0	1
					Potri.010G219950 [exp]	7.93	0.9841
AT3G19230			Leucine-rich repeat (LRR) fami...		Potri.010G213101 [exp]	8.66	0.9698
					Potri.017G069550 [exp]	9.21	0.9750
AT2G24940		ATMAPR2	membrane-associated progestero...		Potri.006G266200 [exp]	10.39	0.9676
AT5G05800			unknown protein		Potri.017G072700 [exp]	11.61	0.9536
AT4G33870			Peroxidase superfamily protein...		Potri.003G053700 [exp]	12.64	0.9556
AT5G62280			Protein of unknown function (D...		Potri.002G147200 [exp]	13.85	0.9493
AT3G16520		UGT88A1	UDP-glucosyl transferase 88A1 ...		Potri.004G071000 [exp]	13.85	0.9605
AT2G47760		AtALG3, ALG3	Arabidopsis thaliana asparagin...		Potri.014G131600 [exp]	14.00	0.9488
AT3G16520		UGT88A1	UDP-glucosyl transferase 88A1 ...		Potri.004G070900 [exp]	16.06	0.9544

Compare expression of checked genes

Potri.009G082700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.