Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G14610 171 / 3e-55 PR-1, PR1, ATPR1 pathogenesis-related gene 1 (.1) AT2G14580 165 / 6e-53 ATPRB1 basic pathogenesis-related protein 1 (.1) AT4G33720 164 / 1e-52 CAP (Cysteine-rich secretory proteins, Antigen 5, and Pathogenesis-related 1 protein) superfamily protein (.1) AT1G50060 162 / 1e-51 CAP (Cysteine-rich secretory proteins, Antigen 5, and Pathogenesis-related 1 protein) superfamily protein (.1) AT3G19690 159 / 2e-50 CAP (Cysteine-rich secretory proteins, Antigen 5, and Pathogenesis-related 1 protein) superfamily protein (.1) AT2G19990 149 / 3e-46 PR-1-LIKE pathogenesis-related protein-1-like (.1) AT4G33730 148 / 4e-46 CAP (Cysteine-rich secretory proteins, Antigen 5, and Pathogenesis-related 1 protein) superfamily protein (.1) AT5G26130 139 / 2e-42 CAP (Cysteine-rich secretory proteins, Antigen 5, and Pathogenesis-related 1 protein) superfamily protein (.1) AT4G31470 138 / 6e-42 CAP (Cysteine-rich secretory proteins, Antigen 5, and Pathogenesis-related 1 protein) superfamily protein (.1) AT4G33710 132 / 5e-40 CAP (Cysteine-rich secretory proteins, Antigen 5, and Pathogenesis-related 1 protein) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G083600 [exp] 200 / 8e-67 AT1G50060 205 / 1e-68 CAP (Cysteine-rich secretory proteins, Antigen 5, and Pathogenesis-related 1 protein) superfamily protein (.1) Potri.009G083100 [exp] 190 / 7e-63 AT2G14610 201 / 4e-67 pathogenesis-related gene 1 (.1) Potri.009G083300 [exp] 189 / 2e-62 AT2G14610 203 / 9e-68 pathogenesis-related gene 1 (.1) Potri.001G288301 [exp] 187 / 2e-61 AT2G14580 202 / 1e-67 basic pathogenesis-related protein 1 (.1) Potri.009G083000 [exp] 184 / 1e-60 AT4G33720 192 / 2e-63 CAP (Cysteine-rich secretory proteins, Antigen 5, and Pathogenesis-related 1 protein) superfamily protein (.1) Potri.009G082900 [exp] 179 / 7e-58 AT2G14610 179 / 5e-58 pathogenesis-related gene 1 (.1) Potri.001G288600 [exp] 174 / 4e-56 AT2G14610 214 / 6e-72 pathogenesis-related gene 1 (.1) Potri.001G288401 [exp] 171 / 2e-55 AT2G14610 178 / 4e-58 pathogenesis-related gene 1 (.1) Potri.018G007000 [exp] 130 / 1e-38 AT4G31470 185 / 6e-60 CAP (Cysteine-rich secretory proteins, Antigen 5, and Pathogenesis-related 1 protein) superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012478 [exp] 224 / 5e-76 AT2G14610 170 / 1e-54 pathogenesis-related gene 1 (.1) Lus10025697 [exp] 187 / 2e-61 AT1G50060 213 / 1e-71 CAP (Cysteine-rich secretory proteins, Antigen 5, and Pathogenesis-related 1 protein) superfamily protein (.1) Lus10007102 [exp] 181 / 1e-58 AT2G14610 182 / 3e-59 pathogenesis-related gene 1 (.1) Lus10020480 [exp] 162 / 2e-51 AT2G14610 182 / 3e-59 pathogenesis-related gene 1 (.1) Lus10020481 [exp] 160 / 1e-50 AT2G14610 176 / 6e-57 pathogenesis-related gene 1 (.1) Lus10020493 [exp] 156 / 3e-49 AT2G14610 206 / 9e-69 pathogenesis-related gene 1 (.1) Lus10012479 [exp] 155 / 6e-49 AT2G14610 208 / 7e-70 pathogenesis-related gene 1 (.1) Lus10020491 [exp] 153 / 3e-48 AT2G14610 207 / 2e-69 pathogenesis-related gene 1 (.1) Lus10020492 [exp] 132 / 4e-40 AT2G14610 157 / 4e-50 pathogenesis-related gene 1 (.1) Lus10005557 [exp] 129 / 3e-38 AT4G31470 199 / 2e-65 CAP (Cysteine-rich secretory proteins, Antigen 5, and Pathogenesis-related 1 protein) superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0659 [poplar] [flax] CAP PF00188 [poplar] [flax] CAP Cysteine-rich secretory protein family
Representative CDS sequence Show only first row Show all	>Potri.009G082800.1 pacid=42771383 polypeptide=Potri.009G082800.1.p locus=Potri.009G082800 ID=Potri.009G082800.1.v4.1 annot-version=v4.1 ATGTGGTTCAGCAAGTTCTTATTAGCAGCATACTTGATGGCATCCGTCTCGGTTAACATCACCTTAGCCCAAAATTCTCCCCAAGACTATGTCGATACAC ACAATGCCGTTCGTGCTGAGGTGGGAGTTGGTCCAATTACTTGGAACAACACCGTGGCAGCCTATGCTCAAAAGTATGCAAATTCAAGGGTTGAAAACTG TGAATTAGAGCATTCAGGAGGACCCTATGGTGAGAACATTGCTGAAGGTTATGGTAACTTGAATGGAGTGGATGCAGTCAAAATGTGGGCAAGTGAGAAG CCTTTCTATAGCCATGATACCAACTCATGTGTCGGTGACGAGTGCCTGCATTACACTCAGGTTGTGTGGCGCAAATCGGTTCATTTAGGGTGTGGCAGAG CTAAGTGCAAGAATGGGTGGTGGTTTGTCACTTGCAATTATGATCCTGTTGGAAACATTGAGGGCCAAAGCCCGTATTGA
AA sequence Show only first row Show all	>Potri.009G082800.1 pacid=42771383 polypeptide=Potri.009G082800.1.p locus=Potri.009G082800 ID=Potri.009G082800.1.v4.1 annot-version=v4.1 MWFSKFLLAAYLMASVSVNITLAQNSPQDYVDTHNAVRAEVGVGPITWNNTVAAYAQKYANSRVENCELEHSGGPYGENIAEGYGNLNGVDAVKMWASEK PFYSHDTNSCVGDECLHYTQVVWRKSVHLGCGRAKCKNGWWFVTCNYDPVGNIEGQSPY

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G14610		PR-1, PR1, ATPR...	pathogenesis-related gene 1 (....		Potri.009G082800 [exp]	0	1
AT1G80830		ATNRAMP1, PMIT1...	natural resistance-associated ...		Potri.005G181100 [exp]	5.47	0.9676	Pt-NRAMP1.4
AT1G80830		ATNRAMP1, PMIT1...	natural resistance-associated ...		Potri.005G181000 [exp]	7.61	0.9672
AT3G12900			2-oxoglutarate (2OG) and Fe(II...		Potri.005G097900 [exp]	9.64	0.9665
AT4G19690		ATIRT1, IRT1	ARABIDOPSIS IRON-REGULATED TRA...		Potri.015G117900 [exp]	10.77	0.9657	Pt-ZIP6.4
AT5G44635		MCM6	MINICHROMOSOME MAINTENANCE 6, ...		Potri.003G157001 [exp]	13.96	0.9099
AT2G21610		PE11, ATPE11	A. THALIANA PECTINESTERASE 11,...		Potri.004G156300 [exp]	16.52	0.9643
AT1G65570			Pectin lyase-like superfamily ...		Potri.010G177601 [exp]	17.60	0.9618
AT3G13610			2-oxoglutarate (2OG) and Fe(II...		Potri.001G006800 [exp]	19.59	0.9605
AT1G11925			Stigma-specific Stig1 family p...		Potri.011G009100 [exp]	19.79	0.9588
AT4G00910			Aluminium activated malate tra...		Potri.001G085900 [exp]	19.89	0.9611

Compare expression of checked genes

Potri.009G082800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.