Plant FIBer expression Database

Potri.009G083702 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.015G035700
[exp]
48 / 1e-07 AT1G71430 100 / 5e-27 unknown protein
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10040114
[exp]
44 / 2e-06 AT1G71430 86 / 4e-21 unknown protein
Lus10007091
[exp]
44 / 3e-06 AT1G71430 85 / 1e-20 unknown protein
PFAM info
Representative CDS sequence
>Potri.009G083702.1 pacid=42772170 polypeptide=Potri.009G083702.1.p locus=Potri.009G083702 ID=Potri.009G083702.1.v4.1 annot-version=v4.1
ATGGGCAGTTCAAGCAAAGAACTTTTGCATTTGGTACACAAGAGTTCCTCCACTACCTCATCCAATGCTGTTCTCTATCTCAGATTTCGTGTTTTTCTCC
CCATGTGTACAGTTTTTCTATTTTTCTTGCCGAAACTACACTTCTTTATTGTATGTAAAAGAGAATCGCAAGAGTCACACCATCAAACCGAGAAGCCCCC
AACTGATGGAAACTACGGACATTCACAGAACTATGATATTGAAGTGCTCGCTGGAAATGATTCATCAGTCATTGAAATGGATTTGATGCTGGTGTGTAGC
TGTGAAGGTGTAGCTGCTGCTTAA
AA sequence
>Potri.009G083702.1 pacid=42772170 polypeptide=Potri.009G083702.1.p locus=Potri.009G083702 ID=Potri.009G083702.1.v4.1 annot-version=v4.1
MGSSSKELLHLVHKSSSTTSSNAVLYLRFRVFLPMCTVFLFFLPKLHFFIVCKRESQESHHQTEKPPTDGNYGHSQNYDIEVLAGNDSSVIEMDLMLVCS
CEGVAAA

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
Potri.009G083702
[exp]
0 1
AT1G14130 2-oxoglutarate (2OG) and Fe(II... Potri.011G146600
[exp]
1.00 0.8258 ARRO.1
AT3G62900 CW-type Zinc Finger (.1) Potri.013G020200
[exp]
4.24 0.8042
AT3G14450 CID9 CTC-interacting domain 9 (.1) Potri.011G095800
[exp]
8.24 0.8084
AT3G62240 C2H2ZnF RING/U-box superfamily protein... Potri.013G004200
[exp]
16.61 0.7498
Potri.018G055900
[exp]
17.49 0.8133
AT3G18270 CYP77A5P "cytochrome P450, family 77, s... Potri.015G044400
[exp]
23.21 0.7432
AT4G20960 Cytidine/deoxycytidylate deami... Potri.014G083000
[exp]
23.28 0.6282
Potri.003G013856
[exp]
25.80 0.8112
AT3G21420 LBO1 LATERAL BRANCHING OXIDOREDUCTA... Potri.008G217200
[exp]
26.32 0.8024
AT1G64320 myosin heavy chain-related (.1... Potri.001G094266
[exp]
32.24 0.7619

Potri.009G083702 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.