Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G33740 94 / 2e-20 unknown protein AT2G22795 86 / 2e-17 unknown protein AT4G37820 83 / 1e-16 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G288800 [exp] 442 / 1e-149 AT4G33740 93 / 7e-20 unknown protein Potri.007G008600 [exp] 104 / 3e-23 AT2G22795 103 / 2e-22 unknown protein Potri.002G112800 [exp] 76 / 8e-15 AT4G37820 83 / 1e-17 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020507 [exp] 128 / 2e-31 AT4G33740 103 / 1e-23 unknown protein Lus10012453 [exp] 122 / 2e-29 AT4G33740 95 / 1e-20 unknown protein Lus10011571 [exp] 109 / 9e-25 AT4G37820 112 / 2e-25 unknown protein Lus10019253 [exp] 104 / 2e-23 AT4G37820 110 / 3e-25 unknown protein Lus10007239 [exp] 54 / 2e-08 AT2G22795 59 / 9e-11 unknown protein Lus10028240 [exp] 53 / 5e-08 AT2G22795 59 / 1e-10 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.009G083900.1 pacid=42772642 polypeptide=Potri.009G083900.1.p locus=Potri.009G083900 ID=Potri.009G083900.1.v4.1 annot-version=v4.1 ATGATCAAGCGGTCACCACGTAGAAACCCCAGATCCAAAGGCAGCAAGTTAAAACATGGTCTTCAGATTTGTTTGTTGCTTGGTGTCTGCTTCTGGTTGA TCTACCAAGTCAAGCATTCCCATGACAAGAAGAAGGAGCTTGATGAGAAAGATGCAAATCTCTCTCTCAGTGCACATCCTCATGATGAGCTTCCAAAACT TGGGAGGAAGGACCTCCATCCTGATTTGCAAGACAAGACCAGGAGTGAGAAACCCGAGGAAGAAGAGGAAGAAGACACTGGAGTAGACGAGGAAGTAAAT AAGAAGGAAGAAAAGGGGCATGAAAAAGAGAAAGAAGAAGAAACCAAGCATGAAGAAGAAGAGGGGGGGACTAAGGATGAAGAGGTGGAAAGAGAAGAAC ATATTCATGAAGAGGAAGAGAGAGAAGGAGAAGGAACTTATCATTTAGACAAAGAAAGAGAAGAAGAAATCAGGCATGAAGAAGAGGAGCAAACTGAAGA AGCAGAGAGTGAAGAAACCGAAGACAAGGGCAGACAAGGTAGAGATGATGAAGTAGATGAACATGATCAAGAGAAAATAGAAGGAGAAGCTGACCGTGAT GAGGAATTTATGGATGAAGAGAAAGAGAGAGAGGATGAAGGCGAGGAAACAGAAAGTCAAGGTAATGAAGGTGAAGATAATGAAGGCGAGGAAAAGGAAA GTCAAGGTAATGAAGATGAGGACAGGGAAGTTCAAGCAGATAATGAAACTCAATCAGAAGATCAGGATCATGATGGAGGAGGTAAGAACTCCCATGAGGC CCGAGAGGAACATTACAAGGCAGACGATGCTTCCAGTGCAGTGACTCACGACACCCAAATTATAAGCACTGAACCAGAGAAAGAAGGTTTGGAGAAATCA AATGAGAACTTGGCAGCAGATGATTTGCAACAAGATAAGTATTCCATTAGTGGTAACCCCCTGGATGTTAATGAGGATAAAATTAACTCAACATCTCAGC TGGAACAAGCTGAAAATGGCCATCCTTTGAATGCAACAACTGATGAAAAGCAAAATGACGAGATCACTCTGACCAAATCTGAGGATGAGTCACCTAACAA CACAAGGGTTACAGTGCTGTCCATTGATCAATTAGTACCAAGCAATAAGTCAATGGAAGTGAGTTCAGAAGCAGGCAATAACCAGGCTGGTGCAAACCTT GAAGTTTCTGGTTCATCCCAGCAGAATGGAATGTGGAATGCCTCAGACTCAAATCAAATTCGAAATGCAACTATTGATGGTCGAGTTACTGGAGATGTAT CCAACATTCAAACCACTCAGTTGGAACAGGTTAATAATGACATGGTTTACAATAGCATTGACTCCTCAAACGCTTCTAGTAATTCGGATTCTGGTGTATC AGATAAGATCATTAAGCCTGAATTAACAGTTGCTGAAGATGTGAATTCTGGGTTGTCTTCCAGAACAAATGAGTCTACAGAAGGTACTCATGATGAGAGC TCAGACACCAAAAATGAATCAGGTGGAACAGATGAAAACACCAATTCTTCTAATATGAACGAGGCTGAAGATGCAATCCTGCATGACCCTATTGATTCTT CAATTGGCCAAGATGAGAGAGAGGCTCGCATAGATCTAGGTACACTGCCAGAGACTGGTGCAGGAGGGGTTAACAGTGGAAATGCTGCAGAAGAATGA
AA sequence Show only first row Show all	>Potri.009G083900.1 pacid=42772642 polypeptide=Potri.009G083900.1.p locus=Potri.009G083900 ID=Potri.009G083900.1.v4.1 annot-version=v4.1 MIKRSPRRNPRSKGSKLKHGLQICLLLGVCFWLIYQVKHSHDKKKELDEKDANLSLSAHPHDELPKLGRKDLHPDLQDKTRSEKPEEEEEEDTGVDEEVN KKEEKGHEKEKEEETKHEEEEGGTKDEEVEREEHIHEEEEREGEGTYHLDKEREEEIRHEEEEQTEEAESEETEDKGRQGRDDEVDEHDQEKIEGEADRD EEFMDEEKEREDEGEETESQGNEGEDNEGEEKESQGNEDEDREVQADNETQSEDQDHDGGGKNSHEAREEHYKADDASSAVTHDTQIISTEPEKEGLEKS NENLAADDLQQDKYSISGNPLDVNEDKINSTSQLEQAENGHPLNATTDEKQNDEITLTKSEDESPNNTRVTVLSIDQLVPSNKSMEVSSEAGNNQAGANL EVSGSSQQNGMWNASDSNQIRNATIDGRVTGDVSNIQTTQLEQVNNDMVYNSIDSSNASSNSDSGVSDKIIKPELTVAEDVNSGLSSRTNESTEGTHDES SDTKNESGGTDENTNSSNMNEAEDAILHDPIDSSIGQDEREARIDLGTLPETGAGGVNSGNAAEE

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G33740			unknown protein		Potri.009G083900 [exp]	0	1
AT1G56290			CwfJ-like family protein (.1)		Potri.001G415900 [exp]	3.16	0.8877
AT1G80930			MIF4G domain-containing protei...		Potri.016G121100 [exp]	6.48	0.8798
AT1G67230		CRWN1, LINC1	CROWDED NUCLEI 1, little nucle...		Potri.017G111400 [exp]	6.78	0.8829
AT1G55460	C2H2ZnF		DNA/RNA-binding protein Kin17,...		Potri.008G055300 [exp]	7.00	0.8562
AT5G08450			unknown protein		Potri.004G135800 [exp]	7.07	0.8685
AT3G47120	C3HZnF		RNA recognition motif (RRM)-co...		Potri.009G044900 [exp]	14.38	0.8183
AT4G00830		LIF2	LHP1-Interacting Factor 2, RNA...		Potri.014G104500 [exp]	14.49	0.7940
AT3G26560			ATP-dependent RNA helicase, pu...		Potri.015G024400 [exp]	16.12	0.8703
AT1G17070			GC-rich sequence DNA-binding f...		Potri.013G076000 [exp]	16.24	0.8649
AT5G27230			Frigida-like protein (.1)		Potri.005G043900 [exp]	16.43	0.8548

Compare expression of checked genes

Potri.009G083900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.