Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G50030 4038 / 0 TOR target of rapamycin (.1.2) AT5G40820 189 / 1e-47 ATATR, ATRAD3, ATR ARABIDOPSIS THALIANA ATAXIA TELANGIECTASIA-MUTATED AND RAD3-RELATED, Ataxia telangiectasia-mutated and RAD3-related (.1) AT3G48190 173 / 2e-42 PIG1, ATATM, ATM pcd in male gametogenesis 1, ARABIDOPSIS THALIANA ATAXIA-TELANGIECTASIA MUTATED, ataxia-telangiectasia mutated (.1) AT2G17930 89 / 5e-17 Phosphatidylinositol 3- and 4-kinase family protein with FAT domain (.1) AT4G36080 84 / 2e-15 phosphotransferases, alcohol group as acceptor;binding;inositol or phosphatidylinositol kinases (.1.2.3) AT1G60490 78 / 6e-14 PI3K, ATVPS34 PHOSPATIDYLINOSITOL 3-KINASE, vacuolar protein sorting 34 (.1) AT5G64070 62 / 5e-09 PI-4KBETA1, PI4KBETA1 phosphatidylinositol 4-OH kinase beta1 (.1) AT5G09350 61 / 1e-08 PI-4KBETA2, PI4KBETA2 phosphatidylinositol 4-OH kinase beta2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G289200 [exp] 4653 / 0 AT1G50030 4080 / 0.0 target of rapamycin (.1.2) Potri.004G147800 [exp] 230 / 8e-60 AT1G50030 252 / 2e-66 target of rapamycin (.1.2) Potri.004G179000 [exp] 195 / 3e-49 AT5G40820 3459 / 0.0 ARABIDOPSIS THALIANA ATAXIA TELANGIECTASIA-MUTATED AND RAD3-RELATED, Ataxia telangiectasia-mutated and RAD3-related (.1) Potri.015G076650 [exp] 183 / 1e-45 AT3G48190 3584 / 0.0 pcd in male gametogenesis 1, ARABIDOPSIS THALIANA ATAXIA-TELANGIECTASIA MUTATED, ataxia-telangiectasia mutated (.1) Potri.012G075100 [exp] 85 / 5e-16 AT1G60490 1388 / 0.0 PHOSPATIDYLINOSITOL 3-KINASE, vacuolar protein sorting 34 (.1) Potri.007G057850 [exp] 83 / 2e-15 AT2G17930 1074 / 0.0 Phosphatidylinositol 3- and 4-kinase family protein with FAT domain (.1) Potri.005G114300 [exp] 82 / 6e-15 AT2G17930 6266 / 0.0 Phosphatidylinositol 3- and 4-kinase family protein with FAT domain (.1) Potri.005G059000 [exp] 64 / 1e-09 AT5G64070 1497 / 0.0 phosphatidylinositol 4-OH kinase beta1 (.1) Potri.007G109000 [exp] 63 / 3e-09 AT5G64070 1412 / 0.0 phosphatidylinositol 4-OH kinase beta1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037246 [exp] 4288 / 0 AT1G50030 4101 / 0.0 target of rapamycin (.1.2) Lus10035661 [exp] 2702 / 0 AT1G50030 2590 / 0.0 target of rapamycin (.1.2) Lus10023840 [exp] 226 / 1e-58 AT1G50030 239 / 2e-62 target of rapamycin (.1.2) Lus10025091 [exp] 189 / 1e-47 AT5G40820 3033 / 0.0 ARABIDOPSIS THALIANA ATAXIA TELANGIECTASIA-MUTATED AND RAD3-RELATED, Ataxia telangiectasia-mutated and RAD3-related (.1) Lus10023991 [exp] 188 / 4e-47 AT5G40820 3276 / 0.0 ARABIDOPSIS THALIANA ATAXIA TELANGIECTASIA-MUTATED AND RAD3-RELATED, Ataxia telangiectasia-mutated and RAD3-related (.1) Lus10019489 [exp] 139 / 3e-32 AT3G48190 3373 / 0.0 pcd in male gametogenesis 1, ARABIDOPSIS THALIANA ATAXIA-TELANGIECTASIA MUTATED, ataxia-telangiectasia mutated (.1) Lus10041911 [exp] 89 / 2e-17 AT2G17930 989 / 0.0 Phosphatidylinositol 3- and 4-kinase family protein with FAT domain (.1) Lus10041910 [exp] 89 / 5e-17 AT2G17930 5862 / 0.0 Phosphatidylinositol 3- and 4-kinase family protein with FAT domain (.1) Lus10028458 [exp] 87 / 3e-16 AT2G17930 6325 / 0.0 Phosphatidylinositol 3- and 4-kinase family protein with FAT domain (.1) Lus10030885 [exp] 86 / 4e-16 AT1G60490 1397 / 0.0 PHOSPATIDYLINOSITOL 3-KINASE, vacuolar protein sorting 34 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF00454 [poplar] [flax] PI3_PI4_kinase Phosphatidylinositol 3- and 4-kinase CL0020 [poplar] [flax] TPR PF02259 [poplar] [flax] FAT FAT domain CL0020 [poplar] [flax] PF02260 [poplar] [flax] FATC FATC domain CL0020 [poplar] [flax] PF08771 [poplar] [flax] FRB_dom FKBP12-rapamycin binding domain CL0020 [poplar] [flax] TPR PF11865 [poplar] [flax] DUF3385 Domain of unknown function (DUF3385) CL0020 [poplar] [flax] TPR PF13646 [poplar] [flax] HEAT_2 HEAT repeats
Representative CDS sequence Show only first row Show all	>Potri.009G084500.4 pacid=42771743 polypeptide=Potri.009G084500.4.p locus=Potri.009G084500 ID=Potri.009G084500.4.v4.1 annot-version=v4.1 ATGGCCTCCACCTCGCAGTCCCTCCGTTTTCTGGCTGGGCCTGCAACCACCGGCCCTGGTGGTGGCAGTTTTGACGCTCTTAATCGCATCCTTGCCGACC TCTGCATACGCGGCAACCCTAAGGAGGGCGCAACATTAGCATTGAGAAAACATCTAGAGGAAGAAGCGCGCGATCTAAGTGGAGAATCATTTCCACGCTT TATGGACCATTTATACGAAAGAATTTCAAGTTTATTAGAAACCAATGAGGTTGCTGAGAATTTGGGAGCATTAAGAGCAATTGATGAGTTAATAGACATA GAACTTGGAGAGAATGCATCCAAAGTGTCTAAGTTTGCTGTTTATATGCGGAGTGTGTTCGAGGTAAAGCGGGATCTTGATGTGTTGACACTTGCTAGTA GAGTTCTTGGCCATCTGGCTAGGGCTGGTGGAGCAATGACTGCGGATGAAGTGAAATTTCAGGTTAAAATGGCACTAGGTTGGCTTCGCAAAGATAAAGC AGAATTTCGCCTTTTTGCTGCCGTCTTAATTTTAAAAGAAATAGCAGAAAATGCTTCTACAGTTTTCAATGTTCATGTAACTGAATTTGTCGAAGCTATT TGGGTTGCACTGAGGCATCCGACATTGGCAATTAGAGAGAAGGCCGTGGAGGCACTGCGTGCTTGCCTTCGAGTTATCGAGAAGCGTGAGACACGTTGGC GCGTGCAGTGGTATTATCGTATGTTTGAGGCTACACAAGATGGATTGGGTAAAAATGCTCCTGTTCACAGCATACATGGTTCTTTACTTGCTGTTGGAGA GCTCTTAAGGAATACTGGTGAGTTCATGATGTCAAGGTACAGAGAAGTTGCTGAGATTGTTCTTAGATACCTTGAGCATCGAGATCGACTTGTTCGCCTT AGCATAACTTCATTGCTACCTCGCATTGCCCACTTTCTGCGGGATAGATTTGTAACAAATTATTTAGAGATATGCATGAATCATATTCTTGCTGTGCTGA GAATACCAGCTGAGCGTGGAAGTGGGTTCATTGCCCTAGGGGAGATGGCTGGTGCTTTGGATGGGGAACTTGTCCATTATTTGCCGACAATTACAGCTCA TTTACGTGATGCAATTGCTCCACGCAGGGCCAAACCCTCACTCGAGGCATTGGTTTGTGTTGGAAACATTGCAAAAGCCATGGGGCCTGCTATGGAACCT TTTGTTCGCAGCCTTTTGGATGTTATGTTCTCCGCGGGGCTCTCTTCCACCCTTGTTGATGCCCTGGAGCAGATAAGTGTAAGTATTCCATCATTGCTGC CGACTATTCAAGAGCGGCTGTTGGACTGCATTTCATTAGTTCTTTCAAAGTCCCATTATTCTCAGCCAAGGACAGCTGTTCCTCCAGTTCGAGGGGGTGC GGGTATTGCACCTCAGCAAGTATCAGACCTCAGTGGTTCTGCCCTGGTGCAACTTACTTTGCAGACACTAGCTCGATTTAATTTTAAGGGGCATGAGCTT CTCGAGTTTGCTAGGGAATCAGTGCTTGTATATTTGGATGATGAAGATGGAGCTACCCGGAAAGATGCTGCACTTTGTTGTTGTAAATTAGTTGCAGATT CCTTTTCTGGCATGACATCTACACAGTTTGGTTCTATCAGGTCCAATCGTAATGGGGGAAAGCGATGGCGTCTTGTCGAGGAGCTCGTGGAAAAGCTTCT CATCGCTGCTGTCGCAGATGCTGATATCACTGTTCGCCAATCTATCTTTTCCTCTCTTCATGGAAATAGAGGTTTCGATAATTTTCTAGCACAAGCTGAT AGTCTCACTGCAGTTTTTGCTGCTTTGAATGATGAGGATTTTGACGTTAGAGAATATGCAATCTCCTTGGCTGGAAGACTATCAGAAAAGAATCCCGCAT ATGTCCTTCCTGCCCTCCGTCGTCATCTCATACAGCTGTTGACCTATCTAAAACAAAGCAGTGCAGATAACAAATGCAGAGAAGAAAGTGCAAAGTTATT AGGTTGTTTGATACGCAATTGTGAACGACTTGTGCTTCCATACATTGCTCCAATACACAAGGCACTTGTGGCAAGACTTAATGAAGGCACAGGAGTAAAT GCCAATAATGGTATCATCAGTGGAGTTCTCGTAACTGTTGGAGATCTTGCTAGAGTGGGTGGTTTTGCTATGAGGCAATATATTTCGGAGCTTATGCCTC TGATAGTTGAAGCTTTGCTAGATGGAGCAGCAGCTACAAAGCGTGAAGTGGCTGTTGCAACTCTTGGGCAAGTTGTTCAAAGCACTGGGTATGTCATAAC TCCATATAATGAGTATCCACAGTTACTTGGCTTACTCCTCAAATTTTTGAATGGCGAATTAGTGTGGTCTACCAGACGTGAAGTATTGAAGGTTCTTGGC ATCATGGGAGCTCTGGATCCTCTTGTGCATAAACGAAACCAACAAAGCCTGCCTGGTTCACATGGTGAGGTTGCTCGTGCAGCCAGTGATTCAGGTCAAC ACATCCCATCAATGGATGAACTACCTATGGACTTTTGGCCATCTTTTGCTACATCAGAAGATTATTACCCAACGGTTGCGATCAACTCCCTCATGCGAAT TCTCAGAGATCCTTCACTTGCTAGCTACCACCAAAAGGTGGTAGGATCTCTTATGTTCATATTTAAGTCAATGGGCCTTGGCTGTGTACCGTATATACCC AAGGTTTTGCCGGATCTCTTTCACACTGTTCGTACATGTGATGATTATCTTAAAGATTTTATAATGTGGAAGCTTGGAACTCTGGTATCTATTGTGCGCC AGCACATACGTAAATATCTGCCTGAATTGCTCTCTTTAATATCTGAATTATGGTCATCCTTCAGCTTGCCAGCTACTATTCGTCCTTCTCGTGGGTTTCC AGTTTTGCATTTAGTGGAACAGCTTTGCTTGGCTCTCAATGATGAATTCAGAAGGCATCTTCCTGTCATTTTGCCAAGCTGTATTCAAGTTCTAAGCGAT GCAGAAAGGTGTAATGACTATACATATGCTCTCGATATACTTCACACACTTGAAGTGTTTGGTGGGACATTGGATGAGCATATGCATCTACTTCTTCCTG CACTTATTCGATTGTTTAAAGTGGATGCTTCTGTGGATATAAGGCGGGCCGCTATCAAAACTTTGACGAGATTGATCCCCTGTGTACAGGTTATTGGTCA CATTTCTGCTCTTGTGCATCACCTGAAGTTAGTGTTGGATGGGAAGAATGATGAGCTCAGGAAAGATGCTGTTGATGCACTTTGTTGTTTGGCTCATGCC TTAGGAGAGGATTTCACCATTTTCATCCCATCAATCCACAAACTCTTACTGAAGCATCGATTGCAGCATAAAGAATTTGAAGAAATTGAAGGACGCTTGA GGAGACGTGAACCTCTAATTTTGGGGAGTACAGCTGCACAAAGATTGAGCAGACGACTTCCAGTGGAGGTTATCAGTGACCCTTTAAATGATATGGAGAA TGACCCTTACGATGATGGGGTTGACATGCAACGACATCTTAGTGGCCATCAGGTTAATGATAGTCAATTACGCACTGCTGGAGAGGCTTCTCAGCGCAGT ACTAAAGAAGATTGGGCAGAGTGGATGAGGCATTTGAGCATCGAACTTCTGAAGGAGTCTCCTTCTCCAGCGTTACGAACCTGTGCAAGGCTTGCACAGT TACAGCCTTTCATTGGCCGGGAATTATTTGCTGCTGGTTTTGTTAGCTGCTGGGCACAACTGAATGAGGCTAGTCAGAAACATTTGGTTCGGAGTTTGGA GATGGCATTTTCATCTCAAAATATTCCTCCAGAGATTCTAGCAACACTTCTTAATTTGGCAGAGTTCATGGAACATGATGAGAAACCTCTACCTATAGAC ATCCGCCTTCTTGGTGCTCTTGCAGATAAGTGTCATGCATTTGCCAAGGCTTTGCATTATAAAGAAATGGAATTTGAAGGTTCACTCTCCAAGAAGATGG ATGCTAATCCCGTTGCTGTAGTTGAAACTCTCATTCATATAAATAATCAGTTACATCAGCATGAGGCTGCTGTTGGAATATTGACCTATGCCCAACAAAA CCTGGATGTTCAACTTAAGGAGTCATGGTATGAGAAGCTGCAACGGTGGGACGACGCTCTCAAAGCATACACTGTCAAAGCCTCTCAAGTTTCAAGTCCA CATCTTGTATTGGAAGCTACATTAGGGAGGATGCGATGCCTTGCTCAGTTAGCTCGGTGGGAAGAGCTTAACAACCTATGCAAGGAATATTGGACACCAG CTGAGCCTTCTGCCCGATTAGAAATGGCTCCGATGGCTGCTAGTGCTGCTTGGAACATGGGTGAGTGGGATCAGATGGCAGAATATGTGTCTCGATTAGA TGATGGTGATGAAACTAAACTTCGGGGTTTGGGGAATACTGCTGCCAGTGGTGATGGAAGTAGTAATGGCACATTCTTCAGGGCTGTGCTATTAGTTCGT AGAGGGAAGTATGATGAAGCTGGCGAGTATGTTGAGAGAGCTAGGAAGTGCCTGGCAACTGAGCTTGCTGCATTGGTTCTGGAGAGCTATGAGCGTGCTT ATGACAATATGATCCGTGTTCAGCAGCTGTCAGAACTAGAGGAGGTCATTGACTATTATACACTTCCTGTGGGAAATCCTGTTGCTGAAGGACGGCGGGC CCTTATACGTAATATGTGGACAGAAAGGATACAAGGAGCAAAGCGTAATGTTGAGGTCTGGCAAGCGCTTTTGGCTGTAAGAGCACTTGTACTGCCTCCA ATTGAAGACATTGATAACTGGCTCAAGTTTGCTTCTCTATGTCGAAAAAGTAATCGGATTAGTCATGCTAGGTCCACTTTGGTTAAACTTTTACAGTATG ACCCTGAGACATCTCCTGAAAACATGCGATACCATGGGCCTCCTCAAGTAATGTTGGCATACTTGAAATATCAATGGTCACTTGGGGAGGATCACAAGCG AAAAGAAGCTTTTTCTAGGTTGCAGGATTTGGCCATAGAGCTTTCAAGTACCCCAAATATGCAATCAATCATACCAACAGGTTTAATGGGTAGCACGGGT CAAAATGTCCATCTCCTGGCACGTGTATATCGTATACTTGGAATCTGGCAGTGGGCGCTTTCTCCTGGTTTGGATGATGATTCCATACAAGAGATCCTTT CATCATTCAGCAATGCCACTCAGTATGAAACAAAATGGGGAAAAGCATGGCACTCATGGGCTTTGTTCAATACAGGAGTGATGTCACACTATACTTTAAG AGGGTTTCCAAATGTTGCCTCACAGTTTGTTGTTGCAGCGGTCACTGGTTATTTTCATTCAATTGCCTATGCAGCAAATGCTAAAGGTGTTGATGGTAGT TTACAGGATATACTCCGCCTTCTTACCTTGTGGTTCAACCATGGAGATACTGCAGAAGTTCAAATGGCACTGCAGAAAGGATTTGCTCATGTTAATATCA ACACATGGCTTGCTGTTTTACCTCAAATAATTGCCAGGATACATTTGAATAACCATGCTCTAAGAGAACTAATTCAATCACTTTTGGTGCGAATTGGACA GAGTCATCCACAGGCTCTTATGTATCCTCTTCTCGTGGCTTGTAAATCTATAAGCAATTTACGTAAAGCAGCTGCTGAGGAAGTGGTAAACAAAGTTCGG CAGCATAGTGGTGTGCTTGTGGACCAGGCACAACTTGTATCATCGGAACTAGTTAGAGTCGCGATACTTTGGCATGAAAAGTGGCACGAGGGACTGGAAG AAGCAAGTCGTTTGTATTTTGGTGAACATAACATTGAGGGAATGCTAAAGGCATTGGAGCCTCTTCATAAAATGCTTGAGGAGGGTGCTATGAAGGAGAA TATTACTATAAAGGAGAGAGCATTCATTGAGGCATACCGGCATGAATTGTTAGAAGCATGGGAGTGTTGTATGAAGTACAAGAGAACTCTAAAAGAGGCT GAGCTTACTCAGGCATGGGATCTATATTATCATGTTTTCAGACGAATAGACAAGCAGCTTCAAGTCATGACAACTCTTGACCTGCAGTCTGTTTCTCCTG AGCTGGTAGAATGCCGTGATTTGGAGCTTGCTGTTCCTGGGACATATCGTGCTGATTTTCCAGTGGTAACAATAGCGTCATTTGCACCTGAGCTTGTTGT CATAACATCAAAACAGCGACCCCGGAAATTGACTATTCATGGAAGTGATGGGGAAGATCATGCCTTCTTGCTGAAGGGACATGAAGATTTGCGCCAAGAC GAACGTGTCATGCAGCTATTTGGATTGGTGAATACTCTGCTGGAGAATTCAAGAAAAACTGAAGAGAAGGATCTGTCTATTCACCGATATGCTGTAATTC CGTTATCTTCAAACAGTGGGTTAATTGAATGGGTTCCTAATTGTGACACACTAAACCAACTCATTCGAGAATACAGGGATGCTAGAAAGATCACCCTAAA TCAAGAGCACAAATACATGCTCAGTTTTGCCCCGGATTATGACAATTTACCACTCATTGCTAAAGTTGAAGTCTTTGATTATGCTCTTCAAAATACTGAA GGAAATGACCTGGCCAGGGTTCTGTGGTTAAAAAGTCGCACTTCTGAGATATGGCTGGAGAGGAGAACAAATTACACAAGGAGTTTAGCAGTCATGAGCA TGGTTGGTTATCTTCTTGGCTTAGGTGATCGACACCCTAGCAACCTTATGCTGCATCGCTACAGTGGGAAGATCTTGCATATTGACTTTGGAGATTGCTT TGAAGCTTCAATGAACAGGGAAAAGTTTCCTGAGAAGGTTCCCTTCCGTTTGACAAGAATGCTTGTGAAAGCTATGGAGGTTAGTGGTATAGAGGGCAAT TTCCGCTCTACTTGTGAAAATGTGATGCAAGTTCTCCGAACACACAGGGATAGTGTTATGGCCATGATGGAGGCTTTTGTTCATGATCCTCTCATCAATT GGCGCCTTTTCAACTTTAATGAAGTCCCACAAATGTCAATGTTTGCCAATAGTCATGTCCCTGCTGTTGTGAATACCGAGGAATCTGCTCCTAGTAGAGA GCTCCCTCAACCGCAACGCGGTGCTCGTGAGAGAGAACTTCTTCAGGCTGTTAATCAGCTTGGTGATGCTAATGAGGTCTTGAATGTACGTGCTGTGGTT GTCATGGCCCGGATGAGTAATAAACTGACTGGACGTGATTTTTCCACACCCTCATTATCTGCAAGCTCTATCCAACATGCAGTAGATCACAGCTCTTTAA TTTCTGGAGATATTCGTGAAGTAGATCATGGCTTATCTGTTAAATTGCAAGTTCAGAAGTTAATTATTCAAGCCATGTCGCATGAAAATCTGTGCCAAAA TTATGTTGGGTGGTGTCCCTTTTGGTGA
AA sequence Show only first row Show all	>Potri.009G084500.4 pacid=42771743 polypeptide=Potri.009G084500.4.p locus=Potri.009G084500 ID=Potri.009G084500.4.v4.1 annot-version=v4.1 MASTSQSLRFLAGPATTGPGGGSFDALNRILADLCIRGNPKEGATLALRKHLEEEARDLSGESFPRFMDHLYERISSLLETNEVAENLGALRAIDELIDI ELGENASKVSKFAVYMRSVFEVKRDLDVLTLASRVLGHLARAGGAMTADEVKFQVKMALGWLRKDKAEFRLFAAVLILKEIAENASTVFNVHVTEFVEAI WVALRHPTLAIREKAVEALRACLRVIEKRETRWRVQWYYRMFEATQDGLGKNAPVHSIHGSLLAVGELLRNTGEFMMSRYREVAEIVLRYLEHRDRLVRL SITSLLPRIAHFLRDRFVTNYLEICMNHILAVLRIPAERGSGFIALGEMAGALDGELVHYLPTITAHLRDAIAPRRAKPSLEALVCVGNIAKAMGPAMEP FVRSLLDVMFSAGLSSTLVDALEQISVSIPSLLPTIQERLLDCISLVLSKSHYSQPRTAVPPVRGGAGIAPQQVSDLSGSALVQLTLQTLARFNFKGHEL LEFARESVLVYLDDEDGATRKDAALCCCKLVADSFSGMTSTQFGSIRSNRNGGKRWRLVEELVEKLLIAAVADADITVRQSIFSSLHGNRGFDNFLAQAD SLTAVFAALNDEDFDVREYAISLAGRLSEKNPAYVLPALRRHLIQLLTYLKQSSADNKCREESAKLLGCLIRNCERLVLPYIAPIHKALVARLNEGTGVN ANNGIISGVLVTVGDLARVGGFAMRQYISELMPLIVEALLDGAAATKREVAVATLGQVVQSTGYVITPYNEYPQLLGLLLKFLNGELVWSTRREVLKVLG IMGALDPLVHKRNQQSLPGSHGEVARAASDSGQHIPSMDELPMDFWPSFATSEDYYPTVAINSLMRILRDPSLASYHQKVVGSLMFIFKSMGLGCVPYIP KVLPDLFHTVRTCDDYLKDFIMWKLGTLVSIVRQHIRKYLPELLSLISELWSSFSLPATIRPSRGFPVLHLVEQLCLALNDEFRRHLPVILPSCIQVLSD AERCNDYTYALDILHTLEVFGGTLDEHMHLLLPALIRLFKVDASVDIRRAAIKTLTRLIPCVQVIGHISALVHHLKLVLDGKNDELRKDAVDALCCLAHA LGEDFTIFIPSIHKLLLKHRLQHKEFEEIEGRLRRREPLILGSTAAQRLSRRLPVEVISDPLNDMENDPYDDGVDMQRHLSGHQVNDSQLRTAGEASQRS TKEDWAEWMRHLSIELLKESPSPALRTCARLAQLQPFIGRELFAAGFVSCWAQLNEASQKHLVRSLEMAFSSQNIPPEILATLLNLAEFMEHDEKPLPID IRLLGALADKCHAFAKALHYKEMEFEGSLSKKMDANPVAVVETLIHINNQLHQHEAAVGILTYAQQNLDVQLKESWYEKLQRWDDALKAYTVKASQVSSP HLVLEATLGRMRCLAQLARWEELNNLCKEYWTPAEPSARLEMAPMAASAAWNMGEWDQMAEYVSRLDDGDETKLRGLGNTAASGDGSSNGTFFRAVLLVR RGKYDEAGEYVERARKCLATELAALVLESYERAYDNMIRVQQLSELEEVIDYYTLPVGNPVAEGRRALIRNMWTERIQGAKRNVEVWQALLAVRALVLPP IEDIDNWLKFASLCRKSNRISHARSTLVKLLQYDPETSPENMRYHGPPQVMLAYLKYQWSLGEDHKRKEAFSRLQDLAIELSSTPNMQSIIPTGLMGSTG QNVHLLARVYRILGIWQWALSPGLDDDSIQEILSSFSNATQYETKWGKAWHSWALFNTGVMSHYTLRGFPNVASQFVVAAVTGYFHSIAYAANAKGVDGS LQDILRLLTLWFNHGDTAEVQMALQKGFAHVNINTWLAVLPQIIARIHLNNHALRELIQSLLVRIGQSHPQALMYPLLVACKSISNLRKAAAEEVVNKVR QHSGVLVDQAQLVSSELVRVAILWHEKWHEGLEEASRLYFGEHNIEGMLKALEPLHKMLEEGAMKENITIKERAFIEAYRHELLEAWECCMKYKRTLKEA ELTQAWDLYYHVFRRIDKQLQVMTTLDLQSVSPELVECRDLELAVPGTYRADFPVVTIASFAPELVVITSKQRPRKLTIHGSDGEDHAFLLKGHEDLRQD ERVMQLFGLVNTLLENSRKTEEKDLSIHRYAVIPLSSNSGLIEWVPNCDTLNQLIREYRDARKITLNQEHKYMLSFAPDYDNLPLIAKVEVFDYALQNTE GNDLARVLWLKSRTSEIWLERRTNYTRSLAVMSMVGYLLGLGDRHPSNLMLHRYSGKILHIDFGDCFEASMNREKFPEKVPFRLTRMLVKAMEVSGIEGN FRSTCENVMQVLRTHRDSVMAMMEAFVHDPLINWRLFNFNEVPQMSMFANSHVPAVVNTEESAPSRELPQPQRGARERELLQAVNQLGDANEVLNVRAVV VMARMSNKLTGRDFSTPSLSASSIQHAVDHSSLISGDIREVDHGLSVKLQVQKLIIQAMSHENLCQNYVGWCPFW

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G50030		TOR	target of rapamycin (.1.2)		Potri.009G084500 [exp]	0	1
ATCG00820		ATCG00820.1, RP...	ribosomal protein S19 (.1)		Potri.011G074301 [exp]	8.00	0.9455
ATCG00820		ATCG00820.1, RP...	ribosomal protein S19 (.1)		Potri.013G137688 [exp]	10.95	0.9446
AT5G27230			Frigida-like protein (.1)		Potri.005G044050 [exp]	11.13	0.8394
ATCG01310		ATCG01310.1, RP...	ribosomal protein L2 (.1)		Potri.013G137077 [exp]	14.07	0.9436
ATCG00820		ATCG00820.1, RP...	ribosomal protein S19 (.1)		Potri.005G154674 [exp]	19.44	0.9413
ATCG01310		ATCG01310.1, RP...	ribosomal protein L2 (.1)		Potri.011G074401 [exp]	26.07	0.9381
ATCG01310		ATCG01310.1, RP...	ribosomal protein L2 (.1)		Potri.013G136466 [exp]	27.14	0.9359
AT2G34500		CYP710A1	cytochrome P450, family 710, s...		Potri.004G131700 [exp]	39.54	0.9200	CYP710.1
ATCG01300		ATCG01300.1, RP...	ribosomal protein L23 (.1)		Potri.005G154350 [exp]	40.31	0.9187
AT5G06790			unknown protein		Potri.006G191100 [exp]	40.39	0.9198

Compare expression of checked genes

Potri.009G084500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.