Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G08170 379 / 2e-131 Inositol 1,3,4-trisphosphate 5/6-kinase family protein (.1.2.3) AT4G33770 372 / 5e-128 Inositol 1,3,4-trisphosphate 5/6-kinase family protein (.1.2) AT5G16760 203 / 6e-63 AtITPK1 inositol \(1,3,4\) P3 5/6-kinase 1, Arabidopsis thaliana inositol \(1,3,4\) P3 5/6-kinase 1, Inositol 1,3,4-trisphosphate 5/6-kinase family protein (.1) AT2G43980 55 / 4e-08 ATITPK4 "inositol 1,3,4-trisphosphate 5/6-kinase 4", inositol 1,3,4-trisphosphate 5/6-kinase 4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G149800 [exp] 396 / 2e-138 AT4G08170 518 / 0.0 Inositol 1,3,4-trisphosphate 5/6-kinase family protein (.1.2.3) Potri.003G094100 [exp] 219 / 4e-69 AT5G16760 373 / 2e-129 inositol \(1,3,4\) P3 5/6-kinase 1, Arabidopsis thaliana inositol \(1,3,4\) P3 5/6-kinase 1, Inositol 1,3,4-trisphosphate 5/6-kinase family protein (.1) Potri.001G140000 [exp] 218 / 3e-68 AT5G16760 372 / 6e-129 inositol \(1,3,4\) P3 5/6-kinase 1, Arabidopsis thaliana inositol \(1,3,4\) P3 5/6-kinase 1, Inositol 1,3,4-trisphosphate 5/6-kinase family protein (.1) Potri.019G047200 [exp] 191 / 5e-58 AT5G16760 332 / 1e-113 inositol \(1,3,4\) P3 5/6-kinase 1, Arabidopsis thaliana inositol \(1,3,4\) P3 5/6-kinase 1, Inositol 1,3,4-trisphosphate 5/6-kinase family protein (.1) Potri.017G007500 [exp] 71 / 3e-13 AT2G43980 534 / 0.0 "inositol 1,3,4-trisphosphate 5/6-kinase 4", inositol 1,3,4-trisphosphate 5/6-kinase 4 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035662 [exp] 398 / 4e-139 AT4G08170 455 / 2e-161 Inositol 1,3,4-trisphosphate 5/6-kinase family protein (.1.2.3) Lus10032808 [exp] 377 / 9e-131 AT4G08170 500 / 5e-179 Inositol 1,3,4-trisphosphate 5/6-kinase family protein (.1.2.3) Lus10007689 [exp] 373 / 5e-129 AT4G08170 499 / 2e-178 Inositol 1,3,4-trisphosphate 5/6-kinase family protein (.1.2.3) Lus10020513 [exp] 296 / 8e-100 AT4G08170 331 / 2e-113 Inositol 1,3,4-trisphosphate 5/6-kinase family protein (.1.2.3) Lus10037247 [exp] 289 / 4e-97 AT4G08170 345 / 3e-119 Inositol 1,3,4-trisphosphate 5/6-kinase family protein (.1.2.3) Lus10039098 [exp] 209 / 6e-63 AT5G55990 374 / 1e-128 calcineurin B-like protein 2 (.1) Lus10038765 [exp] 200 / 9e-62 AT5G16760 350 / 4e-121 inositol \(1,3,4\) P3 5/6-kinase 1, Arabidopsis thaliana inositol \(1,3,4\) P3 5/6-kinase 1, Inositol 1,3,4-trisphosphate 5/6-kinase family protein (.1) Lus10035811 [exp] 175 / 4e-52 AT5G16760 311 / 1e-105 inositol \(1,3,4\) P3 5/6-kinase 1, Arabidopsis thaliana inositol \(1,3,4\) P3 5/6-kinase 1, Inositol 1,3,4-trisphosphate 5/6-kinase family protein (.1) Lus10012447 [exp] 54 / 2e-09 AT4G08170 80 / 7e-20 Inositol 1,3,4-trisphosphate 5/6-kinase family protein (.1.2.3) Lus10033768 [exp] 49 / 4e-06 AT2G43980 395 / 4e-135 "inositol 1,3,4-trisphosphate 5/6-kinase 4", inositol 1,3,4-trisphosphate 5/6-kinase 4 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0179 [poplar] [flax] ATP-grasp PF05770 [poplar] [flax] Ins134_P3_kin Inositol 1,3,4-trisphosphate 5/6-kinase ATP-grasp domain
Representative CDS sequence Show only first row Show all	>Potri.009G084600.1 pacid=42771387 polypeptide=Potri.009G084600.1.p locus=Potri.009G084600 ID=Potri.009G084600.1.v4.1 annot-version=v4.1 ATGAGGATACACGGAGAAATGCCACCTGAAAAAGAAGAGGAGGAGAAAGTGAAGTCGTTGTCTTTATCTATACAACAGCCACAGAAACTGGTGGTGGTTG GGTATGCTTTAACATCAAAGAAAAAGAAGAGTTTTTTGCAGCCAAAGCTTGAAGTTTTAGCCAGAAATAAGGGTATATTGTTCGTTGCTATTGATCTAAA CAGGCCATTGCTGGATCAAGGTCCCTTCGATGTTGTTTTGCACAAGCTGTTGGGAAAGGATTGGTGCGGAGCTATTGAGGATTACAGGAAAAAAAATCCT GAAGTAGCTGTCCTCGATCCTCCAGATGCTATAGAGCAGCTACTCAATCGCCAGTCCATGCTCAATGATGTGACTAATCTCAACTTATCTGACTGCTACG GCAAGGTCCGTGTTCCAAGGCAGATGGTAATTAATAACGATCCATCATCCATCCCTCATGAAGTTACCAGCGCTGGATTAAAGTTGCCACTAGTCGCAAA ACCACTAGTTGTGGATGGAACTGCCAAGTCACATCAAATGTTTCTTGCTTATGATCAATTCTCCCTTTCAGAACTTGAACCTCCCTTAGTGTTGCAAGAG TTTGTTAATCATGGTGGTGTTCTCTTCAAGATTTATATTGTTGGTGAAGCCATAAAGGTTGTACGGCGATTCTCTCTACCTAACGTTACTAAGCAAGAGC TATCAAAAGTTGAAGGTGTTTTTCGATTTCCGAGGGTTTCATCTGCTGCAGCTTCTGCAGATGATGCAGACCTTGACCCTTCTGTTGCTGAACTTCCTCC CCTTCCTTTACTGGAGAAGCTTGCAAGGGAGCTTCGTCACCGACTGGGACTCCGATTGTTTAATGTAGATATGATCCGAGAGCATGGAACAAAAGATGTA TTTTACGTGATAGACATCAATTACTTTCCTGGGTATGGGAAAATGCCAGATTATGAGCACATTTTTACAGATTTCCTACTGAGCCTGATGCAGAGCAAGT ATAAGAACAGACCTGCACAATAA
AA sequence Show only first row Show all	>Potri.009G084600.1 pacid=42771387 polypeptide=Potri.009G084600.1.p locus=Potri.009G084600 ID=Potri.009G084600.1.v4.1 annot-version=v4.1 MRIHGEMPPEKEEEEKVKSLSLSIQQPQKLVVVGYALTSKKKKSFLQPKLEVLARNKGILFVAIDLNRPLLDQGPFDVVLHKLLGKDWCGAIEDYRKKNP EVAVLDPPDAIEQLLNRQSMLNDVTNLNLSDCYGKVRVPRQMVINNDPSSIPHEVTSAGLKLPLVAKPLVVDGTAKSHQMFLAYDQFSLSELEPPLVLQE FVNHGGVLFKIYIVGEAIKVVRRFSLPNVTKQELSKVEGVFRFPRVSSAAASADDADLDPSVAELPPLPLLEKLARELRHRLGLRLFNVDMIREHGTKDV FYVIDINYFPGYGKMPDYEHIFTDFLLSLMQSKYKNRPAQ

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G08170			Inositol 1,3,4-trisphosphate 5...		Potri.009G084600 [exp]	0	1
					Potri.016G089400 [exp]	1.00	0.8706
AT1G71960		ATABCG25, ABCG2...	Arabidopsis thaliana ATP-bindi...		Potri.019G083000 [exp]	4.89	0.8263
AT5G57685		LSB1, ATGDU3	LESS SUSCEPTIBLE TO BSCTV 1, A...		Potri.017G107200 [exp]	7.07	0.7983
AT5G05600			2-oxoglutarate (2OG) and Fe(II...		Potri.008G069300 [exp]	9.16	0.8230
					Potri.009G084666 [exp]	12.00	0.7528
AT5G61890	AP2_ERF		Integrase-type DNA-binding sup...		Potri.012G108500 [exp]	13.41	0.8199
AT3G57540			Remorin family protein (.1)		Potri.006G053200 [exp]	14.49	0.8074
AT2G41180		SIB2	sigma factor binding protein 2...		Potri.019G013300 [exp]	15.42	0.8352
AT3G63440		ATCKX6, CKX6, A...	CYTOKININ OXIDASE 6, cytokinin...		Potri.001G020900 [exp]	17.14	0.7577
AT1G11580		ATPMEPCRA	methylesterase PCR A (.1)		Potri.011G025400 [exp]	18.89	0.8053

Compare expression of checked genes

Potri.009G084600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.