Plant FIBer expression Database

Potri.009G085400 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G44910 651 / 0 ATPRP40A pre-mRNA-processing protein 40A (.1.2)
AT3G19670 603 / 0 ATPRP40B pre-mRNA-processing protein 40B (.1)
AT3G19840 62 / 2e-09 ATPRP40C pre-mRNA-processing protein 40C (.1)
AT2G41020 51 / 3e-06 WW domain-containing protein (.1.2)
AT4G16280 49 / 2e-05 FCA RNA binding;abscisic acid binding (.1.2.3.4)
AT2G47310 44 / 0.0006 flowering time control protein-related / FCA gamma-related (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.001G289800
[exp]
1337 / 0 AT1G44910 667 / 0.0 pre-mRNA-processing protein 40A (.1.2)
Potri.014G013100
[exp]
783 / 0 AT1G44910 808 / 0.0 pre-mRNA-processing protein 40A (.1.2)
Potri.010G170400
[exp]
111 / 1e-24 AT3G19840 631 / 0.0 pre-mRNA-processing protein 40C (.1)
Potri.002G115501
[exp]
52 / 3e-07 ND /
Potri.010G147900
[exp]
54 / 4e-07 AT4G16280 338 / 3e-107 RNA binding;abscisic acid binding (.1.2.3.4)
Potri.002G192900
[exp]
47 / 5e-05 AT2G47310 273 / 1e-85 flowering time control protein-related / FCA gamma-related (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10006142
[exp]
827 / 0 AT3G19670 648 / 0.0 pre-mRNA-processing protein 40B (.1)
Lus10033770
[exp]
823 / 0 AT1G44910 682 / 0.0 pre-mRNA-processing protein 40A (.1.2)
Lus10018659
[exp]
644 / 0 AT1G44910 834 / 0.0 pre-mRNA-processing protein 40A (.1.2)
Lus10007723
[exp]
615 / 0 AT1G44910 828 / 0.0 pre-mRNA-processing protein 40A (.1.2)
Lus10030562
[exp]
112 / 9e-25 AT3G19840 671 / 0.0 pre-mRNA-processing protein 40C (.1)
Lus10012908
[exp]
71 / 4e-12 AT3G19840 673 / 0.0 pre-mRNA-processing protein 40C (.1)
Lus10037787
[exp]
53 / 1e-06 AT4G16280 391 / 5e-127 RNA binding;abscisic acid binding (.1.2.3.4)
Lus10006305
[exp]
50 / 1e-06 AT4G16280 68 / 1e-13 RNA binding;abscisic acid binding (.1.2.3.4)
Lus10029574
[exp]
49 / 2e-05 AT4G16280 467 / 1e-155 RNA binding;abscisic acid binding (.1.2.3.4)
Lus10017070
[exp]
47 / 8e-05 AT4G16280 376 / 2e-121 RNA binding;abscisic acid binding (.1.2.3.4)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0680 WW PF00397 WW WW domain
CL0584 FF PF01846 FF FF domain
Representative CDS sequence
>Potri.009G085400.3 pacid=42771248 polypeptide=Potri.009G085400.3.p locus=Potri.009G085400 ID=Potri.009G085400.3.v4.1 annot-version=v4.1
ATGGCCAATAACCCTCAATTCTCTGGAATACAGCCTCTTCAGCCTCCTCTGGTGGGCCCAATGGATCCTCCTCGAAATTTGTTTCCACCACCACCGATGC
CTGTTCAATTCCGACCCATTGTTCCAGTGCAGCCACAACAATTCATTCCTGTGAGTTCTCCACACTTTCAGCCTGTTGGCCGGGGTGTCACTGTGATGAA
TGCGGGATTGCCTCCTCAACCCCCACAACCTCAATTTCCTCATCCAATGCAGCAGTTACCAGCTATACCTAACCAGCCAAGCCATGGTCCTCCTCCACCA
CCACCACCACAGGCAATTCTATTGCCAAATGCTCAGCCAAACAGGCATGTCATGTCTGGATCTCCACTGCCTCCACATAGTGTTCAAACTCCAAACAACT
ATATGCCTGGTTTAGGTGGCTTGGGAGTGCCTCTATCTTCATCGTATACTTTTGCACCATCTTCACATGGTCAACCACCCGTAACCTTTAACGCTGTATC
TCAATATCAGCCTATGCCTCAAATGCATGCACCGTCTATTCCCTCTGGAGGACAGCCAGCATTACCATCCATGAACCAGAACACTGCACTTGTTTTGCCT
ATACAGCACAATGGTGAACAGTCTTCAATTACCGCTGCCAATGTTCTGGCAACTGGTATCCAACCTAGGCCGACTGAAGAAGCCTTGACAGAGTGGAAAG
AACATACATCTGGTAATGGAAGGAGGTTTTATTACAACAAGAGGACAAAGCAATCTAGTTGGGAGAAGCCTTTCGAGTTAATGACACCAATTGAGAGGGC
AGATGCATCAACTGACTGGAAGGAATTCACAAGTCCTGATGGACGAAAATATTACTTCAACAAAGTTACAAAGCAGTCAAAATGGGAAATCCCAGAAGAA
TTGAAGTTGGCCCGTGCACGAGTAGAAAAGCCATCTATCATGGAAACACAATCGGAAGTCTCTGCTAATTCTCATGCCCCTACTTCTGTTCTTCCATCTA
TGGGTAAGGCACCATCTAGTGCCGATGCTTTGTCTTCTACAGCTCAAGGGGCACCATCAAGTCCAGTTCCTGTTAAACCTGTTGCTGTTGCTGGTAACTC
GCAATCTCAGTTAGCTTCTGAATCATCAGCCCTACGTGTTATGCCCTCTTCCATGACGACCAATGCAGATGAAGTTCAGACAACCGAGAGTCCTGTTGCT
GGTGTTCCAAAAAATGCTGAAATCAATGCTACAGCAGTTAACACAATAACTGCACCAATGAGCGACAGCTTTTCTGCTCATGATAAACCTAGTTCAGAAG
ATGATGCTCCTGCACAAGATAAACAGGAAGCTGAAAAAGATGTTGTCATAGATGAAAAGGTTAACAATGTTACATTGGAAGAGAAATCAATTAATCAGGA
TCCCTTACTTTATGCTGATAAGCTGGAGGCAAAAAATGCATTTAAAGCACTTTTGGAGTCTGCAAATGTTGGGTCTGAGTGGACCTGGGACCAGGCCATG
AGAGTAATAATTAATGATAAAAGATATGGTGCATTAAAAACACTTGGAGAGCGGAAGCAAGCATTTAATGAGTTCTTGGGTCAGAAGAGAAAACAGGAAG
CTGAGGAAAGGAGGATTAAACAGAAAAAAACACGGGAAGAATTCAAGAAAATGCTAGAAGGGTCCAAAGAGCTGACAGCATCCATGAGATGGAGTAAAGT
AGCGACTCTGTTTGAAAACGATGAGCGGTTTAAAGCTGTTGAACGAGAAAGAGACCGTAGAGATCTGATTGAAACCTACTTGCAGGAACTTGAAGAAAAG
GAACGAGCGAAGGCACATGAGGAGCGCAAGAGGAACATCATGGAATACAGGCAGTTTTTGGAATCGTGCGAATTTATAAAGGCAAGCACCCAGTGGCGAA
AAGTACAGGATCGGTTAGAAGCTGATGAAAGATGTTCACGCCTTGAAAAAATTGATCGCTTAGAAATTTTTCAGGATTATTTACATGATTTGGTGAAGGA
AGAAGAGGAGCAAAGGAAGATACAGAAGGAAGAACAAAGAAAGGCAGAGCGTAAAAATCGTGACGAGTTCCGCAAGCTGCTTGAAGAACATGTTGCTTCA
GGAACTCTTACAGCCAAAACTAACTGGCGTGATTATCACCTAAAGGTTAAAGATTTGCATGCATATGTGGCTGTCGCTTCAAATGCCTCAGGTTCAACTC
CAAAAGATTTGTTTGAAGATGTCTCTGAGGAGCTACAGAAACAATATCATGAGGACAAAACTTGGATAAAAGATGTTGTAAAGTTGAAAAAGGTTCCTTT
GGCATCAAACTGGACACTTCAGGATATGAAGGTTGCTATTATCGAGGATGTTAACTCTCCACCTATATCAGATGTGAACCTAAAGATGGTATTTGATGAG
TTGCTGGAAAGAGCAAGGGAAAAGGAGGAGAAAGAAGCCAAGAAGCGTAAACGTCTTGCAGATGATTTTCTCAATCTACTACAGTCTATCAAGGATATAA
CTGCATCTTCAAAGTGGGAGAGCTTCAAGGAAATCTTCGAAGGAAGCCAAGAGTACAGTTCCATTGGTGAAGAAGCCTTCTGCAGGGAGATGTTTGAGGA
ATATATATCCCAACTGAAAGAACAGGAGAAGGAGAATGAGCGGAAACGAAAGGAGGAAAAGGCAAAAAAGGAAAAAGAGAGAGAGGAAAGAGATTGGAGG
AAAGCTAAGCATAGAAGCGAAAAGGAGAGGGGACATGAAAGAGACAAGGAGCACACAAGGAAGGAAGAAGCTGATGTTGAAATCTCTGATACAACAGAAA
CTCAAGTTTGTAGTGATAAGAAAAGATCTGGGAGTGACAATAGCAGCAGGAAACAGAGGAAGAGGCATCAAAATGCTGTGGATGATCTGGATGAAAGTGA
GAAGGATCGGTCCAAGAGTTCCCATAGACATGGCAGCAATGACCACAAAAAATCAAGAAGGCATGGTTCCACCCCTGAGTCAGACAGTGAAAGCAGGCAC
AAGAGACACAAGAGAGACCACCGTAATGGTTCTCGTAGGGCTGGTGGTAATGAGGATCTCGAAGATGGGGAATTTGGTGAGGATAGGGAAACTCGGTAG
AA sequence
>Potri.009G085400.3 pacid=42771248 polypeptide=Potri.009G085400.3.p locus=Potri.009G085400 ID=Potri.009G085400.3.v4.1 annot-version=v4.1
MANNPQFSGIQPLQPPLVGPMDPPRNLFPPPPMPVQFRPIVPVQPQQFIPVSSPHFQPVGRGVTVMNAGLPPQPPQPQFPHPMQQLPAIPNQPSHGPPPP
PPPQAILLPNAQPNRHVMSGSPLPPHSVQTPNNYMPGLGGLGVPLSSSYTFAPSSHGQPPVTFNAVSQYQPMPQMHAPSIPSGGQPALPSMNQNTALVLP
IQHNGEQSSITAANVLATGIQPRPTEEALTEWKEHTSGNGRRFYYNKRTKQSSWEKPFELMTPIERADASTDWKEFTSPDGRKYYFNKVTKQSKWEIPEE
LKLARARVEKPSIMETQSEVSANSHAPTSVLPSMGKAPSSADALSSTAQGAPSSPVPVKPVAVAGNSQSQLASESSALRVMPSSMTTNADEVQTTESPVA
GVPKNAEINATAVNTITAPMSDSFSAHDKPSSEDDAPAQDKQEAEKDVVIDEKVNNVTLEEKSINQDPLLYADKLEAKNAFKALLESANVGSEWTWDQAM
RVIINDKRYGALKTLGERKQAFNEFLGQKRKQEAEERRIKQKKTREEFKKMLEGSKELTASMRWSKVATLFENDERFKAVERERDRRDLIETYLQELEEK
ERAKAHEERKRNIMEYRQFLESCEFIKASTQWRKVQDRLEADERCSRLEKIDRLEIFQDYLHDLVKEEEEQRKIQKEEQRKAERKNRDEFRKLLEEHVAS
GTLTAKTNWRDYHLKVKDLHAYVAVASNASGSTPKDLFEDVSEELQKQYHEDKTWIKDVVKLKKVPLASNWTLQDMKVAIIEDVNSPPISDVNLKMVFDE
LLERAREKEEKEAKKRKRLADDFLNLLQSIKDITASSKWESFKEIFEGSQEYSSIGEEAFCREMFEEYISQLKEQEKENERKRKEEKAKKEKEREERDWR
KAKHRSEKERGHERDKEHTRKEEADVEISDTTETQVCSDKKRSGSDNSSRKQRKRHQNAVDDLDESEKDRSKSSHRHGSNDHKKSRRHGSTPESDSESRH
KRHKRDHRNGSRRAGGNEDLEDGEFGEDRETR

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT1G44910 ATPRP40A pre-mRNA-processing protein 40... Potri.009G085400
[exp]
0 1
AT3G25680 unknown protein Potri.010G131000
[exp]
4.47 0.7012
AT1G44910 ATPRP40A pre-mRNA-processing protein 40... Potri.001G289800
[exp]
6.48 0.7867
AT3G22430 unknown protein Potri.010G235700
[exp]
7.21 0.7688
AT4G20740 EMB3131 EMBRYO DEFECTIVE 3131, Pentatr... Potri.003G203100
[exp]
9.94 0.7821
AT3G23900 RNA recognition motif (RRM)-co... Potri.017G058300
[exp]
10.48 0.7601
AT4G35740 ATRECQ3, RECQL3 A. THALIANA RECQ HELICASE 3, D... Potri.005G107400
[exp]
11.31 0.7545
AT5G13480 FY Transducin/WD40 repeat-like su... Potri.003G197900
[exp]
12.72 0.6517
AT1G10890 unknown protein Potri.001G211000
[exp]
13.22 0.7577
AT3G10390 FLD FLOWERING LOCUS D, Flavin cont... Potri.010G227200
[exp]
19.33 0.6991
AT2G44430 DNA-binding bromodomain-contai... Potri.009G023100
[exp]
21.21 0.7100 BRD908

Potri.009G085400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.