Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G19660 64 / 2e-15 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G290200 [exp] 88 / 3e-25 AT3G19660 71 / 2e-18 unknown protein Potri.017G109800 [exp] 51 / 2e-10 AT3G19660 50 / 6e-10 unknown protein Potri.017G109900 [exp] 50 / 3e-10 AT3G19660 49 / 1e-09 unknown protein Potri.004G105800 [exp] 49 / 1e-09 AT3G19660 41 / 3e-06 unknown protein Potri.004G105900 [exp] 47 / 4e-09 AT3G19660 46 / 2e-08 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012438 [exp] 81 / 4e-22 AT3G19660 84 / 1e-23 unknown protein Lus10033765 [exp] 77 / 1e-20 AT3G19660 82 / 1e-22 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.009G085800.1 pacid=42772470 polypeptide=Potri.009G085800.1.p locus=Potri.009G085800 ID=Potri.009G085800.1.v4.1 annot-version=v4.1 ATGGCAATTCAGCTAGAGAATCTGGTGCAGTCAATCAAATCAAAAGTTAGAGCCTTGAAGAAGAAGTCCAAGAAACCATACATCAAGATGGACAAGAGTG CAAGTGTTAAGGTTGAGATCCGTAGCAGAAAAGCAAGAAAACTTATTGACAAGACTCTTCAAGTTGCTGATCGTCCTGGGAAGCGCACCATTTCTTGA
AA sequence Show only first row Show all	>Potri.009G085800.1 pacid=42772470 polypeptide=Potri.009G085800.1.p locus=Potri.009G085800 ID=Potri.009G085800.1.v4.1 annot-version=v4.1 MAIQLENLVQSIKSKVRALKKKSKKPYIKMDKSASVKVEIRSRKARKLIDKTLQVADRPGKRTIS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G19660			unknown protein		Potri.009G085800 [exp]	0	1
AT3G07040		RPS3, RPM1	RESISTANCE TO PSEUDOMONAS SYRI...		Potri.001G134300 [exp]	4.47	0.9475
AT2G42440	AS2		Lateral organ boundaries (LOB)...		Potri.002G041100 [exp]	5.47	0.9418
AT4G24350			Phosphorylase superfamily prot...		Potri.008G028500 [exp]	6.48	0.9378
AT5G01830			ARM repeat superfamily protein...		Potri.006G107600 [exp]	10.09	0.9316
AT3G52970		CYP76G1	"cytochrome P450, family 76, s...		Potri.005G029600 [exp]	10.58	0.9364
AT2G44890		CYP704A1	"cytochrome P450, family 704, ...		Potri.012G131200 [exp]	11.40	0.8846
AT4G20820			FAD-binding Berberine family p...		Potri.011G162884 [exp]	13.56	0.9151
AT1G52190			Major facilitator superfamily ...		Potri.018G041700 [exp]	13.60	0.9352
AT3G07040		RPS3, RPM1	RESISTANCE TO PSEUDOMONAS SYRI...		Potri.005G035400 [exp]	17.23	0.9236
AT3G09390		ATMT-K, ATMT-1,...	ARABIDOPSIS THALIANA METALLOTH...		Potri.019G100001 [exp]	18.16	0.9154

Compare expression of checked genes

Potri.009G085800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.