Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G14930 309 / 4e-98 GENE101, SAG101 senescence-associated gene 101 (.1.2.3) AT3G52430 165 / 5e-44 PAD4, ATPAD4 ARABIDOPSIS PHYTOALEXIN DEFICIENT 4, alpha/beta-Hydrolases superfamily protein (.1) AT3G48090 74 / 2e-13 ATEDS1, EDS1 enhanced disease susceptibility 1, alpha/beta-Hydrolases superfamily protein (.1.2) AT3G48080 71 / 9e-13 alpha/beta-Hydrolases superfamily protein (.1) AT3G07400 47 / 3e-05 lipase class 3 family protein (.1) AT1G56630 46 / 7e-05 alpha/beta-Hydrolases superfamily protein (.1) AT3G14360 44 / 0.0004 alpha/beta-Hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G290600 [exp] 910 / 0 AT5G14930 328 / 2e-105 senescence-associated gene 101 (.1.2.3) Potri.019G005256 [exp] 656 / 0 AT5G14930 317 / 3e-101 senescence-associated gene 101 (.1.2.3) Potri.019G007227 [exp] 632 / 0 AT5G14930 300 / 3e-94 senescence-associated gene 101 (.1.2.3) Potri.001G291033 [exp] 220 / 8e-69 AT5G14930 84 / 4e-19 senescence-associated gene 101 (.1.2.3) Potri.001G291166 [exp] 147 / 1e-42 AT5G14930 55 / 3e-10 senescence-associated gene 101 (.1.2.3) Potri.007G100600 [exp] 149 / 4e-38 AT3G52430 320 / 4e-102 ARABIDOPSIS PHYTOALEXIN DEFICIENT 4, alpha/beta-Hydrolases superfamily protein (.1) Potri.005G068700 [exp] 124 / 1e-29 AT3G52430 327 / 2e-104 ARABIDOPSIS PHYTOALEXIN DEFICIENT 4, alpha/beta-Hydrolases superfamily protein (.1) Potri.015G069600 [exp] 96 / 2e-20 AT3G48090 424 / 2e-141 enhanced disease susceptibility 1, alpha/beta-Hydrolases superfamily protein (.1.2) Potri.012G074700 [exp] 96 / 2e-20 AT3G48080 426 / 7e-142 alpha/beta-Hydrolases superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039444 [exp] 522 / 5e-170 AT3G01380 1238 / 0.0 transferases;sulfuric ester hydrolases;catalytics;transferases (.1) Lus10009502 [exp] 461 / 4e-156 AT5G14930 299 / 5e-94 senescence-associated gene 101 (.1.2.3) Lus10014518 [exp] 444 / 1e-149 AT5G14930 298 / 2e-93 senescence-associated gene 101 (.1.2.3) Lus10032169 [exp] 434 / 1e-145 AT5G14930 314 / 7e-100 senescence-associated gene 101 (.1.2.3) Lus10011697 [exp] 421 / 3e-141 AT5G14930 255 / 4e-78 senescence-associated gene 101 (.1.2.3) Lus10039472 [exp] 380 / 2e-126 AT5G14930 223 / 1e-66 senescence-associated gene 101 (.1.2.3) Lus10029534 [exp] 149 / 9e-38 AT3G52430 349 / 2e-112 ARABIDOPSIS PHYTOALEXIN DEFICIENT 4, alpha/beta-Hydrolases superfamily protein (.1) Lus10039617 [exp] 149 / 1e-37 AT3G52430 375 / 1e-122 ARABIDOPSIS PHYTOALEXIN DEFICIENT 4, alpha/beta-Hydrolases superfamily protein (.1) Lus10004841 [exp] 128 / 5e-35 AT5G14930 99 / 4e-25 senescence-associated gene 101 (.1.2.3) Lus10036644 [exp] 87 / 6e-18 AT3G48090 275 / 2e-87 enhanced disease susceptibility 1, alpha/beta-Hydrolases superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [poplar] [flax] AB_hydrolase PF01764 [poplar] [flax] Lipase_3 Lipase (class 3)
Representative CDS sequence Show only first row Show all	>Potri.009G086100.4 pacid=42771469 polypeptide=Potri.009G086100.4.p locus=Potri.009G086100 ID=Potri.009G086100.4.v4.1 annot-version=v4.1 ATGTCCATCTCTGTTTGTGACACCTTTTCCAGATTTATCAGTGGGCTAGATTTGGCAGACTTGGTGGTCAACGCCGACCTGCTCCAGCTTTCATGTGATG CCATAGAGGACCTGCACGCAGAAACCAATCCACATCAACAACTGTCCAGCACTCTGTCTGTAAGACACAAACTTGTTCAACAATCGAATTGTACCATCAT AGCTTTTGCCACTTCACCTCTCTGTACAAAAGACCATATTTTACAAGGAGGAGATTTGGTTTCATCATCAACTCTCGAGGAGCAGAAGTTTCCTCTCTTT GACTTCCTACGCTCCAAAGGCAATCCGTCCTTCTCCATTCTTAGAGTTGCAATAAACCTTTTTGAGGCCTACTTTCAGGAGCTCTCTCAACTCAAAGATC AAATCCATGATTCGACGACTGAAGAATTACTAGTGAACTCTCGGTTGATTGTTACTGGACATTCTCTTGGAGGAACAATTGCTTCTCTCTTTACTCTATG GTTGTTAGACAACATAAAAAAGACAACCAGAAGAAATCAACTCCCCTTCTGCATCACTTTTGGTTCACCCCTTATAGGCGACCAAGGCTTCCAACGAGCC ATCTCAGAACATTCACAACGGAATTCTTGTTTTCTACACGTTGCTGCCTTCAAGGACCTATCCCCAGGAATTTTCATAACTTCACAGCCTAATCCTCAGT ACATGCCTTTTGGTACATATTTCTTCTGTTCTGAGCTGGGATGCAACTGTGTTGAAGACCCTGAAGTGGTTTCATGGTTATTGAAAAGCACAATAACTCC AGTTTCCGCTGAAGAAATGGGGATTGATGATTATAGTGGAATAGTGAAGCATCTGAAGTCGAGGCTTATCATGAAGGATAATTCACAACTTGGCCAACCA GTTACGCCTTCACTTCGGCCGGAGATGATTTTACAACTGAAAGCCATTGGATTTGAAATAACTGCTCAGCAGCAGCAGAACAACATCATCAATGATCTTA TTTCAGAATGGGAAAGACACGAAAATCGAAAGGCACAACAAATGAAGGCTATTGACCCGAACGAAAAACTAAACATAGTTAAGATAAGAATGGCCAACTT AGAATGGTACAAGAAAGACTGCAAGGCTAAGGGGGTAGGCTACTATGATAGTTACAAGAACCTGTACTTCACAAGAGATGGAGAGGTTACCAAGCACAAG AAAGTTCTCTTCGATTACTGGAAAAAATTCGTGGAGGACCTTGAGCGAAAACCCCAAAAAGAAGGAGCATTTATGCGGGAGACATGGCTTTTCGCTGGAA CAAATTATAGAAGAATGGTTGAACCACTTGACATTGCTCAATACTATAGACAGACTGGGAAACGAGACTATCTAACTTATGGAAGATCCAGACATTATAT TCTGCTGGAGCAATGGCAAAAGGAGCAAACAGAAAAACTTGCAGGCCCACCAAATGATAAGAAGAAACAAAGTGTGGCTGGTATTCTTACAGAGGATTCT TGCTTTTGGATGAACGTGGAGGAGGCTCTCATTTCATGCAAATTGTTGAAGGATGAAACCTCCAGTACTTCAGAGAAACAGTCAGCGAGAGAGTCTCTGA ATACTTTCGAGCAATATGTGATGGACCAAATTAATAACTATGCGGTGTCTCCTGAGATTTTCTTGGAAAAAAGCAGTTTTACGAAATGGTGGAAAGATTT TCAGGAAATCATTGAAACATCCCATAATTCTCCTCTCACTGACTTCATGAAGAATCGCACATATCGCCAATATGAAAGGGGGCAGTTTTAG
AA sequence Show only first row Show all	>Potri.009G086100.4 pacid=42771469 polypeptide=Potri.009G086100.4.p locus=Potri.009G086100 ID=Potri.009G086100.4.v4.1 annot-version=v4.1 MSISVCDTFSRFISGLDLADLVVNADLLQLSCDAIEDLHAETNPHQQLSSTLSVRHKLVQQSNCTIIAFATSPLCTKDHILQGGDLVSSSTLEEQKFPLF DFLRSKGNPSFSILRVAINLFEAYFQELSQLKDQIHDSTTEELLVNSRLIVTGHSLGGTIASLFTLWLLDNIKKTTRRNQLPFCITFGSPLIGDQGFQRA ISEHSQRNSCFLHVAAFKDLSPGIFITSQPNPQYMPFGTYFFCSELGCNCVEDPEVVSWLLKSTITPVSAEEMGIDDYSGIVKHLKSRLIMKDNSQLGQP VTPSLRPEMILQLKAIGFEITAQQQQNNIINDLISEWERHENRKAQQMKAIDPNEKLNIVKIRMANLEWYKKDCKAKGVGYYDSYKNLYFTRDGEVTKHK KVLFDYWKKFVEDLERKPQKEGAFMRETWLFAGTNYRRMVEPLDIAQYYRQTGKRDYLTYGRSRHYILLEQWQKEQTEKLAGPPNDKKKQSVAGILTEDS CFWMNVEEALISCKLLKDETSSTSEKQSARESLNTFEQYVMDQINNYAVSPEIFLEKSSFTKWWKDFQEIIETSHNSPLTDFMKNRTYRQYERGQF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G14930		GENE101, SAG101	senescence-associated gene 101...		Potri.009G086100 [exp]	0	1
AT3G58480			calmodulin-binding family prot...		Potri.015G125950 [exp]	3.87	0.8033
AT5G66900			Disease resistance protein (CC...		Potri.007G038900 [exp]	4.35	0.8577
AT3G54070			Ankyrin repeat family protein ...		Potri.011G015801 [exp]	5.91	0.7910
AT3G47570			Leucine-rich repeat protein ki...		Potri.003G150000 [exp]	8.24	0.8097
AT2G04515			unknown protein		Potri.014G166900 [exp]	8.48	0.7627
AT2G45910			U-box domain-containing protei...		Potri.002G160300 [exp]	12.48	0.7564
AT5G23570		SGS3, ATSGS3	SUPPRESSOR OF GENE SILENCING 3...		Potri.001G037000 [exp]	13.26	0.7705
AT3G17380			TRAF-like family protein (.1)		Potri.014G055400 [exp]	17.54	0.7253
AT4G16860		RPP5, RPP4	recognition of peronospora par...		Potri.019G097300 [exp]	17.74	0.7744
AT4G01550	NAC	ANAC069, NTM2	NAC with Transmembrane Motif 2...		Potri.002G181800 [exp]	18.02	0.7561

Compare expression of checked genes

Potri.009G086100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.