Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G70210 168 / 3e-49 ATCYCD1;1, CYCD1;1 CYCLIN D1;1 (.1) AT2G22490 164 / 3e-47 CYCD2;1, ATCYCD2;1 Cyclin D2;1 (.1.2) AT5G65420 152 / 3e-43 CYCD4;1 CYCLIN D4;1 (.1.2.3) AT5G10440 144 / 1e-40 CYCD4;2 cyclin d4;2 (.1) AT4G34160 118 / 4e-30 CYCD3;1 CYCLIN D3;1 (.1) AT3G50070 113 / 3e-28 CYCD3;3 CYCLIN D3;3 (.1) AT5G67260 112 / 5e-28 CYCD3;2 CYCLIN D3;2 (.1) AT4G03270 97 / 5e-23 CYCD6;1 Cyclin D6;1 (.1) AT4G37630 89 / 9e-20 CYCD5;1 cyclin d5;1 (.1.2) AT5G11300 55 / 3e-08 CYC2BAT, CYCA2;2, CYC3B CYCLIN A2;2, mitotic-like cyclin 3B from Arabidopsis (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G292300 [exp] 544 / 0 AT2G22490 178 / 1e-52 Cyclin D2;1 (.1.2) Potri.002G103500 [exp] 183 / 8e-55 AT2G22490 262 / 3e-85 Cyclin D2;1 (.1.2) Potri.014G005900 [exp] 176 / 1e-52 AT1G70210 181 / 1e-54 CYCLIN D1;1 (.1) Potri.007G005700 [exp] 174 / 6e-52 AT1G70210 178 / 1e-53 CYCLIN D1;1 (.1) Potri.010G095200 [exp] 172 / 1e-50 AT1G70210 374 / 6e-130 CYCLIN D1;1 (.1) Potri.008G146600 [exp] 172 / 1e-50 AT1G70210 370 / 3e-128 CYCLIN D1;1 (.1) Potri.005G157800 [exp] 154 / 4e-44 AT5G65420 228 / 2e-73 CYCLIN D4;1 (.1.2.3) Potri.019G118600 [exp] 119 / 1e-30 AT4G03270 244 / 2e-79 Cyclin D6;1 (.1) Potri.013G149000 [exp] 117 / 3e-30 AT4G03270 231 / 1e-74 Cyclin D6;1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029194 [exp] 171 / 2e-50 AT1G70210 367 / 2e-127 CYCLIN D1;1 (.1) Lus10010709 [exp] 167 / 1e-48 AT1G70210 375 / 4e-130 CYCLIN D1;1 (.1) Lus10019317 [exp] 117 / 7e-30 AT5G67260 338 / 4e-115 CYCLIN D3;2 (.1) Lus10011507 [exp] 115 / 5e-29 AT5G67260 343 / 7e-117 CYCLIN D3;2 (.1) Lus10014089 [exp] 110 / 5e-27 AT4G34160 332 / 2e-112 CYCLIN D3;1 (.1) Lus10019825 [exp] 110 / 5e-27 AT4G34160 332 / 4e-112 CYCLIN D3;1 (.1) Lus10027874 [exp] 103 / 2e-24 AT4G34160 226 / 6e-70 CYCLIN D3;1 (.1) Lus10018739 [exp] 100 / 2e-23 AT4G34160 237 / 3e-75 CYCLIN D3;1 (.1) Lus10024796 [exp] 98 / 7e-23 AT4G34160 231 / 4e-73 CYCLIN D3;1 (.1) Lus10039738 [exp] 97 / 2e-22 AT4G03270 243 / 1e-78 Cyclin D6;1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0065 [poplar] [flax] Cyclin PF00134 [poplar] [flax] Cyclin_N Cyclin, N-terminal domain CL0065 [poplar] [flax] Cyclin PF02984 [poplar] [flax] Cyclin_C Cyclin, C-terminal domain
Representative CDS sequence Show only first row Show all	>Potri.009G086700.1 pacid=42772544 polypeptide=Potri.009G086700.1.p locus=Potri.009G086700 ID=Potri.009G086700.1.v4.1 annot-version=v4.1 ATGTCTCACCCGCACTCTCCAGACCACTGTGCTTCTGCAGTTAACAGCCTGTACTGCGGTGAAGATGCCAGTGAGGTGGTCCAGCAGGATGCTGACACGT GGATCTCCAGCTACCATCAATCCCCATCGCCATCCACCATCCCTTCTCCACCATCTGATGAGAATACAATCACCAAATTCATTGACTCTGAATCTCAGTT CATGCCTTTGTCTGACTATCTCCATCGTTGCCGTCACCGTTCCATTGACACCACGGCCCGCCAAGACTCCATCAACTGGATCCTCAAGGTGCATGCCCAC TATGCCTTCAGGCCATTAACGGCGTTACTCTCTGTTAATTACTTCGACCGTTTTCTTTCATCCTATTCTCTTCCGGAAAATGGGTGGCCGTATCAGATAC TATCAGTGGCATGCTTGTCTTTAGCAGCGAAAATGGAAGAACCCGACGTGCCATTATTATTAGACCTTCAAGTACTCGAACCCGGATTCATATTTGAACC CAAGAACATTCAAAAAATGGAGCTTCGAGTCATGGCCTATCTCAATTGGAGATTACGATCTGTCACTCCATTCGATTATCTTGATTACTTCATTTCAAAG CTCCCTTCTTGTTCCTCTACGAATCCCGACAATTTCAGTCGGCTCTTGAAAGATTCATCGGATCTCATTCTCAACACCACCCGTGTGATTGATTTCTTGG GTTTTACACCGTCGACGGTGGCGGCGGCGGCGGCGATATCCGCTGCCGGCAAGAGTTATGATACTATACCATGGGAGGCTGGTGATGGGCAGTTCTTTCA TGAGAGAGTGAACAAAGAAATGGTGAGAAGCTGTCACCAACTCATGGAGGAATACCTGATCGACACATGTCCATTGTCTCGGCATAAGGTGCTGTCGGCT GAGGCCTCAGTTGAGCCGGCTAGCCCAGTTGGCGTGCTCGACGCAGCTGCTGCTTGTGGGAGCTGTGACACGCGTTCCGAGAATCCCATCTCGGCTAGCA GCCAAGCCCCCGAAACTGAGCCGATTATTAAGCGGCTAAGATCTTCTGCATCGGATGTACAGGAACCGTAG
AA sequence Show only first row Show all	>Potri.009G086700.1 pacid=42772544 polypeptide=Potri.009G086700.1.p locus=Potri.009G086700 ID=Potri.009G086700.1.v4.1 annot-version=v4.1 MSHPHSPDHCASAVNSLYCGEDASEVVQQDADTWISSYHQSPSPSTIPSPPSDENTITKFIDSESQFMPLSDYLHRCRHRSIDTTARQDSINWILKVHAH YAFRPLTALLSVNYFDRFLSSYSLPENGWPYQILSVACLSLAAKMEEPDVPLLLDLQVLEPGFIFEPKNIQKMELRVMAYLNWRLRSVTPFDYLDYFISK LPSCSSTNPDNFSRLLKDSSDLILNTTRVIDFLGFTPSTVAAAAAISAAGKSYDTIPWEAGDGQFFHERVNKEMVRSCHQLMEEYLIDTCPLSRHKVLSA EASVEPASPVGVLDAAAACGSCDTRSENPISASSQAPETEPIIKRLRSSASDVQEP

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G70210		ATCYCD1;1, CYCD...	CYCLIN D1;1 (.1)		Potri.009G086700 [exp]	0	1
AT3G49220			Plant invertase/pectin methyle...		Potri.015G013700 [exp]	1.00	0.7976	PME2.12
AT5G13460		IQD11	IQ-domain 11 (.1)		Potri.001G021000 [exp]	2.82	0.7712
AT3G06150			unknown protein		Potri.008G202400 [exp]	4.00	0.7468
AT3G14240			Subtilase family protein (.1)		Potri.001G163600 [exp]	4.24	0.7702
AT3G06740	GATA	GATA15	GATA transcription factor 15 (...		Potri.010G001300 [exp]	6.63	0.7329
AT4G25140		OLE1, OLEO1	oleosin 1 (.1)		Potri.003G150600 [exp]	7.68	0.6586
AT5G42340		PUB15	Plant U-Box 15 (.1)		Potri.004G205000 [exp]	8.48	0.7380
AT5G11520		YLS4, ASP3	YELLOW-LEAF-SPECIFIC GENE 4, a...		Potri.006G241500 [exp]	9.48	0.6983
					Potri.010G001200 [exp]	9.89	0.7513
AT4G28320		MAN5, AtMAN5	endo-beta-mannase 5, Glycosyl ...		Potri.006G009400 [exp]	11.83	0.7578

Compare expression of checked genes

Potri.009G086700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.