Plant FIBer expression Database

Potri.009G087100 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G14680 608 / 0 MEE13 maternal effect embryo arrest 13, myosin heavy chain-related (.1.2.3)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.001G292800
[exp]
1046 / 0 AT2G14680 607 / 0.0 maternal effect embryo arrest 13, myosin heavy chain-related (.1.2.3)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10010456
[exp]
699 / 0 AT2G14680 576 / 0.0 maternal effect embryo arrest 13, myosin heavy chain-related (.1.2.3)
Lus10003821
[exp]
697 / 0 AT2G14680 567 / 0.0 maternal effect embryo arrest 13, myosin heavy chain-related (.1.2.3)
PFAM info
Representative CDS sequence
>Potri.009G087100.1 pacid=42772850 polypeptide=Potri.009G087100.1.p locus=Potri.009G087100 ID=Potri.009G087100.1.v4.1 annot-version=v4.1
ATGGATACAAATTTAAACGACAAGGAGTCCGTGGTTGCTCGAATCCAACAATTGGAACATGAGTGTGATGAGTTGCACAAAGATATAGAACAATTGTGTA
TGCAGCAAGCTGGACCTGGTTACCTTGCTGCTGCTACTCGAATGCATTTCCAGAGGACAGCTGGATTGGTCCAGGAGATTGAGAAATTGAAAAAGCAGTT
GGTTGCTTGCACAAGAGATAATCTTAATCTTCAAGAGGAGCTTTCTGAGGCTTACCGAATTAAAACCCAACTGGCCGAACTACACCAAGCAGAGGCTGCA
AAGAACATGGAGGCAGAGAAGCAGGTTAAGTTTTTCCAAGGTTGTGTAGCTGCTGCTTTTGCTGAGCGTGATACTTCGATAATGGAGGCTGAAAAGGCAA
AGGAGAAGGAGGAATCCATGTCCCAGAAATTTAATGAAATTCAGCAGAGGTTAGAAGTGCTTAATTCAGATGTTCTTGAACAGAAGAGACTAAATGATGC
ACTGGAGAGTGATCTAGTAAAGCAAGAAGAGCAGATTGAGACTTTCAAGAAGGTTGTCAACAAATTTTATGAGGTCAGGCAGTATTCTCTCGAGGGATTT
GAGGATACAAGTTGGGATGATAAATGTGCGTGTCTGTTACACGACTCAGAAGAAATGTGGAGTTATAATGATGCTTCCACTTCTAAATACATTAGTGCAT
TAGAAGAAGAGGTGGAGGCACTGAGGAACTCTCTGGAAAAGCTTCAAAGCAAATTACAAGTGGGTTTGGAAATTGAAAATCACTTAAAGAAGAAAGTTCG
TGAACTTGAAATGGAGCAAGTTCTTTGGAACAAAATGGTTACAACTGGGATAGAAGAATTACGCCATTACCATTCTCAGCATAGAGATCAAATCACAAGC
TTACTTGGTGAGGAAAGATCCTATCTCAAATCGATCATTGATATGGCAGAAGAAAAGATCAAGCAATTCGATGTGACCAGAGAACAGAATTTGGAGCTTT
GTAGAGTTGTAAAACTTCAAGAAAATAAATTTGGAGATTTGCATACGAGTACTGATGCTGATTCTGCCTTAGCATCGAAGAGAAATGACGAAGGCTCACC
AGATATCGTGGCTGATAAAGAAGGCAACTTGTCTGAAGGCCTTGCACAGGCACTGCAAGAAAAGGTTTCAGCGCTATTGCTTTTATCTCAGCAGGAAGAA
AGGCATTTACTGGAGAGAAATGTCTGCATGGCTCTTCAGAAAAAGACAGAGGAGCTTCAAAGAAACTTACTACAAGTCACCAATGAAAAAGTTAAAGTTC
TTATGGAGTTGGCGCAGTTAAAGCTTGAATATCAAGAACTACAAGAGAAAGGCGGCAGTGAGATAAAACAAGATTTTTTGTGTGACAATGGGGAGAGAAG
ACTTTCTAATCATGAAAGAGATGGAAGGATAAGAAATCTGCTGAAGAGGACATATCTAAGACGTTGGATGGGCATGCTGGATAGTGGAAATGAAGCTCGA
GCTTCCACGAGTGGTGCAGGGAGTTTCTCTGGGAAAAGGTCAAATGACATGGATTTTGCGAGAATGAAGATTGAAAATGCCACTCTCAAGGAAAGCATGG
AAAGCATGGATCATCTAATTTCTGCAATTCACAGACTACGCCTTGCACTTCTAAAGGTCAAAGAGTCAGATACTCGTGAAGGTACAGTTAGTGGCCTGCC
AGTAGCTCTTGATGATATCATTTCCGAGGCTAGACTTGTGAAGACTGCCCTTGGAAGCTCCTTACCCATTAGTTGGTCTGCCGAGGCAGATGATGCATCA
ATTGGTGAAAGTTTCCACAACAAGCTAACTGATATTTATGGGGAACACAGTAGTGAGAAGATAGATCCTGTTTCTGCTGCAGGTTTTGAAATGGTGGAGC
TTCTGATACTTGCAGGTCAGATACTAAAGGACAATAAAACCATAAAGGGTTCCTGA
AA sequence
>Potri.009G087100.1 pacid=42772850 polypeptide=Potri.009G087100.1.p locus=Potri.009G087100 ID=Potri.009G087100.1.v4.1 annot-version=v4.1
MDTNLNDKESVVARIQQLEHECDELHKDIEQLCMQQAGPGYLAAATRMHFQRTAGLVQEIEKLKKQLVACTRDNLNLQEELSEAYRIKTQLAELHQAEAA
KNMEAEKQVKFFQGCVAAAFAERDTSIMEAEKAKEKEESMSQKFNEIQQRLEVLNSDVLEQKRLNDALESDLVKQEEQIETFKKVVNKFYEVRQYSLEGF
EDTSWDDKCACLLHDSEEMWSYNDASTSKYISALEEEVEALRNSLEKLQSKLQVGLEIENHLKKKVRELEMEQVLWNKMVTTGIEELRHYHSQHRDQITS
LLGEERSYLKSIIDMAEEKIKQFDVTREQNLELCRVVKLQENKFGDLHTSTDADSALASKRNDEGSPDIVADKEGNLSEGLAQALQEKVSALLLLSQQEE
RHLLERNVCMALQKKTEELQRNLLQVTNEKVKVLMELAQLKLEYQELQEKGGSEIKQDFLCDNGERRLSNHERDGRIRNLLKRTYLRRWMGMLDSGNEAR
ASTSGAGSFSGKRSNDMDFARMKIENATLKESMESMDHLISAIHRLRLALLKVKESDTREGTVSGLPVALDDIISEARLVKTALGSSLPISWSAEADDAS
IGESFHNKLTDIYGEHSSEKIDPVSAAGFEMVELLILAGQILKDNKTIKGS

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT2G14680 MEE13 maternal effect embryo arrest ... Potri.009G087100
[exp]
0 1
Potri.004G011300
[exp]
6.48 0.8420
AT5G13420 Aldolase-type TIM barrel famil... Potri.003G161900
[exp]
8.30 0.8456
AT4G31880 unknown protein Potri.001G046500
[exp]
10.77 0.7930
AT1G08720 EDR1, ATEDR1 ENHANCED DISEASE RESISTANCE 1,... Potri.013G034800
[exp]
12.64 0.7583 Pt-EDR1.2
AT5G22360 ATVAMP714 vesicle-associated membrane pr... Potri.001G219200
[exp]
13.85 0.8186
AT1G16220 Protein phosphatase 2C family ... Potri.001G473300
[exp]
14.42 0.8402
AT5G15790 RING/U-box superfamily protein... Potri.017G100100
[exp]
14.49 0.8265
AT1G76460 RNA-binding (RRM/RBD/RNP motif... Potri.002G004600
[exp]
15.09 0.7454
AT1G11910 ATAPA1, APA1 aspartic proteinase A1 (.1) Potri.004G007600
[exp]
18.43 0.8388
AT1G55550 P-loop containing nucleoside t... Potri.001G000800
[exp]
20.97 0.7469

Potri.009G087100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.