Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G49870 350 / 4e-125 ATARLA1C ADP-ribosylation factor-like A1C (.1) AT5G67560 346 / 1e-123 ATARLA1D ADP-ribosylation factor-like A1D (.1) AT5G37680 317 / 4e-112 ATARLA1A ADP-ribosylation factor-like A1A (.1) AT3G49860 280 / 1e-97 ATARLA1B ADP-ribosylation factor-like A1B (.1) AT2G24765 112 / 2e-31 ARF3, ARL1, ATARL1 ARF-LIKE 1, ADP-ribosylation factor 3 (.1.2) AT1G10630 110 / 8e-31 ATARFA1F ADP-ribosylation factor A1F (.1) AT2G47170 109 / 2e-30 ARF1A1C, ARF1 Ras-related small GTP-binding family protein (.1) AT5G52210 110 / 3e-30 ATGB1, ATARLB1 GTP-binding protein 1 (.1.2) AT1G70490 109 / 3e-30 ATARFA1D Ras-related small GTP-binding family protein (.1.2.3) AT1G23490 109 / 3e-30 ATARFA1A, ATARF1, ATARF ADP-RIBOSYLATION FACTOR 1A, ADP-ribosylation factor 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G293100 [exp] 373 / 2e-134 AT3G49870 348 / 1e-124 ADP-ribosylation factor-like A1C (.1) Potri.017G130500 [exp] 321 / 8e-114 AT5G37680 355 / 6e-127 ADP-ribosylation factor-like A1A (.1) Potri.004G086200 [exp] 314 / 6e-111 AT5G37680 328 / 1e-116 ADP-ribosylation factor-like A1A (.1) Potri.018G096077 [exp] 115 / 2e-32 AT2G24765 354 / 8e-127 ARF-LIKE 1, ADP-ribosylation factor 3 (.1.2) Potri.006G171500 [exp] 114 / 2e-32 AT2G24765 353 / 8e-127 ARF-LIKE 1, ADP-ribosylation factor 3 (.1.2) Potri.018G013700 [exp] 114 / 3e-32 AT2G24765 336 / 6e-120 ARF-LIKE 1, ADP-ribosylation factor 3 (.1.2) Potri.015G140400 [exp] 114 / 7e-32 AT5G52210 343 / 1e-121 GTP-binding protein 1 (.1.2) Potri.012G138500 [exp] 113 / 2e-31 AT5G52210 348 / 7e-124 GTP-binding protein 1 (.1.2) Potri.006G267800 [exp] 112 / 2e-31 AT2G24765 333 / 8e-119 ARF-LIKE 1, ADP-ribosylation factor 3 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019259 [exp] 355 / 3e-127 AT3G49870 355 / 5e-127 ADP-ribosylation factor-like A1C (.1) Lus10025201 [exp] 355 / 5e-127 AT3G49870 353 / 1e-126 ADP-ribosylation factor-like A1C (.1) Lus10012090 [exp] 353 / 2e-126 AT3G49870 353 / 2e-126 ADP-ribosylation factor-like A1C (.1) Lus10011545 [exp] 250 / 1e-86 AT3G49870 243 / 9e-84 ADP-ribosylation factor-like A1C (.1) Lus10014991 [exp] 114 / 8e-32 AT5G52210 320 / 1e-112 GTP-binding protein 1 (.1.2) Lus10031436 [exp] 109 / 3e-30 AT5G14670 368 / 2e-132 ADP-ribosylation factor A1B (.1) Lus10005749 [exp] 109 / 4e-30 AT5G52210 337 / 2e-119 GTP-binding protein 1 (.1.2) Lus10030884 [exp] 109 / 6e-30 AT5G14670 371 / 4e-133 ADP-ribosylation factor A1B (.1) Lus10038871 [exp] 111 / 1e-29 AT5G52210 326 / 3e-113 GTP-binding protein 1 (.1.2) Lus10001524 [exp] 109 / 1e-29 AT1G10630 372 / 3e-133 ADP-ribosylation factor A1F (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF00071 [poplar] [flax] Ras Ras family
Representative CDS sequence Show only first row Show all	>Potri.009G087400.1 pacid=42771395 polypeptide=Potri.009G087400.1.p locus=Potri.009G087400 ID=Potri.009G087400.1.v4.1 annot-version=v4.1 ATGGGATTATGGGAAGCTTTTCTCAACTGGATACGAAGTCTCTTTTTCAAGCAAGAAATGGAGCTGTCTCTAATAGGACTTCAGAATGCTGGGAAGACTT CTCTTGTAAATGTTATTGCGACTGGTGGATATAGCGAAGACATGATCCCAACAGTTGGATTTAATATGAGGAAGGTTACAAAAGGCAATGTCACAATAAA GTTGTGGGATCTCGGAGGTCAACCACGATTCCGCAGTATGTGGGAGAGATATTGTCGTGCAGTTTCGGCCATTGTATATGTCGTGGATGCTGCTGATTAT GATAATTTATCTGTCTCAAAAAGTGAACTGCATGATCTTTTGAGTAAACCGTCACTGAGTGGTATCCCTTTGTTAGTACTGGGAAATAAGATTGACAAAC CAGGATCCTTGTCTAAGGAAGATTTTATGGAACAAATGGGGCTTAAGTCCATCACCGACAGAGAAGTATGCTGCTACATGATCTCATGCAAGAACTCAAC CAACATCGATACAGTTATTGACTGGCTTGTAAAACATTCAAAATCAAAGAATTGA
AA sequence Show only first row Show all	>Potri.009G087400.1 pacid=42771395 polypeptide=Potri.009G087400.1.p locus=Potri.009G087400 ID=Potri.009G087400.1.v4.1 annot-version=v4.1 MGLWEAFLNWIRSLFFKQEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADY DNLSVSKSELHDLLSKPSLSGIPLLVLGNKIDKPGSLSKEDFMEQMGLKSITDREVCCYMISCKNSTNIDTVIDWLVKHSKSKN

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G49870		ATARLA1C	ADP-ribosylation factor-like A...		Potri.009G087400 [exp]	0	1
AT3G49870		ATARLA1C	ADP-ribosylation factor-like A...		Potri.001G293100 [exp]	1.41	0.8696
AT1G23750			Nucleic acid-binding, OB-fold-...		Potri.010G041000 [exp]	7.34	0.7669
AT3G22950		ATARFC1	ADP-ribosylation factor C1 (.1...		Potri.015G142600 [exp]	8.94	0.7886
AT4G30010			unknown protein		Potri.018G142500 [exp]	12.32	0.8129
AT3G05000			Transport protein particle (TR...		Potri.013G031000 [exp]	19.51	0.7914
AT5G05800			unknown protein		Potri.004G135901 [exp]	19.89	0.7109
AT4G08455			BTB/POZ domain-containing prot...		Potri.005G183600 [exp]	24.24	0.7274
AT5G47570			unknown protein		Potri.001G122200 [exp]	26.92	0.7868
AT5G09900		RPN5A, MSA, EMB...	REGULATORY PARTICLE NON-ATPASE...		Potri.005G087100 [exp]	32.44	0.7589
AT5G23540			Mov34/MPN/PAD-1 family protein...		Potri.014G032900 [exp]	33.04	0.7836

Compare expression of checked genes

Potri.009G087400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.