Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G33840 573 / 0 Glycosyl hydrolase family 10 protein (.1) AT4G33860 561 / 0 Glycosyl hydrolase family 10 protein (.1) AT4G33830 559 / 0 Glycosyl hydrolase family 10 protein (.1) AT4G33820 546 / 0 Glycosyl hydrolase superfamily protein (.1) AT4G33810 525 / 0 Glycosyl hydrolase superfamily protein (.1) AT2G14690 503 / 2e-173 Glycosyl hydrolase superfamily protein (.1) AT4G38650 395 / 3e-131 Glycosyl hydrolase family 10 protein (.1) AT4G38300 243 / 3e-76 glycosyl hydrolase family 10 protein (.1) AT1G10050 226 / 9e-64 glycosyl hydrolase family 10 protein / carbohydrate-binding domain-containing protein (.1) AT1G58370 222 / 1e-62 ATXYN1, RXF12 ARABIDOPSIS THALIANA XYLANASE 1, glycosyl hydrolase family 10 protein / carbohydrate-binding domain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G087700 [exp] 857 / 0 AT4G33860 529 / 0.0 Glycosyl hydrolase family 10 protein (.1) Potri.009G087600 [exp] 675 / 0 AT4G33820 506 / 4e-175 Glycosyl hydrolase superfamily protein (.1) Potri.009G087900 [exp] 540 / 0 AT4G33840 695 / 0.0 Glycosyl hydrolase family 10 protein (.1) Potri.004G173300 [exp] 375 / 2e-123 AT4G38650 753 / 0.0 Glycosyl hydrolase family 10 protein (.1) Potri.002G113132 [exp] 226 / 5e-64 AT1G58370 1352 / 0.0 ARABIDOPSIS THALIANA XYLANASE 1, glycosyl hydrolase family 10 protein / carbohydrate-binding domain-containing protein (.1) Potri.002G113066 [exp] 219 / 2e-62 AT1G58370 1064 / 0.0 ARABIDOPSIS THALIANA XYLANASE 1, glycosyl hydrolase family 10 protein / carbohydrate-binding domain-containing protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033784 [exp] 581 / 0 AT4G33820 480 / 2e-160 Glycosyl hydrolase superfamily protein (.1) Lus10014642 [exp] 544 / 0 AT4G33840 663 / 0.0 Glycosyl hydrolase family 10 protein (.1) Lus10033786 [exp] 541 / 0 AT4G33860 663 / 0.0 Glycosyl hydrolase family 10 protein (.1) Lus10020985 [exp] 514 / 7e-178 AT4G33840 634 / 0.0 Glycosyl hydrolase family 10 protein (.1) Lus10014646 [exp] 403 / 7e-136 AT4G33820 336 / 6e-110 Glycosyl hydrolase superfamily protein (.1) Lus10025054 [exp] 365 / 6e-120 AT4G38650 677 / 0.0 Glycosyl hydrolase family 10 protein (.1) Lus10034490 [exp] 306 / 2e-97 AT4G38650 566 / 0.0 Glycosyl hydrolase family 10 protein (.1) Lus10007243 [exp] 229 / 1e-64 AT1G58370 1291 / 0.0 ARABIDOPSIS THALIANA XYLANASE 1, glycosyl hydrolase family 10 protein / carbohydrate-binding domain-containing protein (.1) Lus10028243 [exp] 228 / 4e-64 AT1G58370 1278 / 0.0 ARABIDOPSIS THALIANA XYLANASE 1, glycosyl hydrolase family 10 protein / carbohydrate-binding domain-containing protein (.1) Lus10033787 [exp] 208 / 7e-64 AT4G33860 266 / 2e-86 Glycosyl hydrolase family 10 protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0058 [poplar] [flax] Glyco_hydro_tim PF00331 [poplar] [flax] Glyco_hydro_10 Glycosyl hydrolase family 10
Representative CDS sequence Show only first row Show all	>Potri.009G087800.5 pacid=42771831 polypeptide=Potri.009G087800.5.p locus=Potri.009G087800 ID=Potri.009G087800.5.v4.1 annot-version=v4.1 ATGATGAAGATACTAGCAGGATGCTGTGTATTGGTGCTCATAAGCATTTTCCTGCCTTCAGTGTGCAGGATTCATGCTTTCTCCTATGATTATTCTGCTA CAACAGAGTGCTTGATAGAGCCCCAGAGAGCTCAGTATGAAGGAGGGATAATAGCTAATCCAGATTTTACTCATGGCGTACAAGGGTGGACTGTGTTTGG ACAAGGAGCAATAAAAGAAGGAATATCAAAGAATGGAAACAGATATATTGTTGCACACAGCAGAAGCCAGCCACTTGACAGCATTTCCCAGAAGGTTCAG TTAGAGAAAGGAAAGCTCTACAGCTTCTCTGCTTGGGTTCAAATCAATGGAGGACGTGGAAATGTAGCTGTTGTATTCAAAATGTCTCGGGGTGAACTTG TTCGTGGTGGTAAAGTTTTGGCTAGGAATGGATGCTGGTCTTTGCTGAAAGGCGGTGTGTTTGCAAATACTTCAAGTCGTGTTGAGATTCTATTTGAGAG CAAAAATACAGAGGCAGAAATATGGGTAGACAATGTCTCATTACAACCTTTCACCATGGAACAATGGAGATCCCACCAAGATGAAAGCACTGACACGGAA AGGAAAGGAAAGGTGAGATTCGAAGTAAGGAATGCCAACGGAACTGCAATAGAAGGTGCAAGGTTCTCAATAAAACAAACCAAGTCAGACTTTCCATTTG GATGCTGTATGAACTATCACATTATCAACAGCACAGATTACCAAAACTGGTTTACTTTGAGATTCAAGTATACCACTTTCACCAATGAAATGAAATGGTA CACTACTGAAAAAATACAAGGTCAAGAAAACTATACTGTTGCAGATGCCATGGTAAGATTTGCCCAACAAAATGGCATTTCTATCAGAGGCCACAACATT TTCTGGGACAATCCTGTGTACCAACCACATTGGGTTAAGAATCTAACTTTAGAAGAATTACAAAATGCTGCAGACCAAAGAATAAAATCAGTGGTTTCGA GATACGCAGGACAACTAATTGCGTGGGATGTAATGAATGAAAATCTCCACTTCAGCTTCTTTGAGGATAAACTTGGCAAAAACGCTTCTGCCGAGTACTA TGCAAGAGCATACCAACTCGATCCAGACACCACAATGTTCCTGAACGAATACAATACAATTGAATATAGCAGTGATGAAAAAGCAAATCCGTTCAACTAC AAGACGAAACTTGATGAAATTCTGTCATATCCTGGAAACCAAGGAATATCAGCAGGCATTGGTTTGCAGGGCCATTTTGGTTCTGGCCAGCCTAACCTTG CTTACATGAGATCATGCTTGGACATTCTAGGATCAACAGGATTGCCTATATGGCTTACAGAAGTGGACGTCGGCAAAGACCCGAATCAGGCAGAGTACTT GGAGCAGGTACTAAGGGAAGGCTATTCTCATCCTGCTGTTAAAGGGATTATAATGTTCGTTGGTCCAGCAAACGCTGGGTTCAACAGTACAGTCCTAGCA GACGAGGACTTCAAAAATACTCCAGCTGGAGATGTTGTGGATAAGTTGATAGATGAGTGGAGATTTCAGACAACAGAAATAAAAGCAGATGGTAAAGGGT CCATTGAAATTCCGCTGTTTCATGGAGATTACAACATAACTGTCAAGGACCCAGTTAGCAGTTCCTTAACTGCTTTCAGTTATAAGATGACAAGAGATGT CACAAGAGACACTGTCCATCTTCGTATCAATGCCTGA
AA sequence Show only first row Show all	>Potri.009G087800.5 pacid=42771831 polypeptide=Potri.009G087800.5.p locus=Potri.009G087800 ID=Potri.009G087800.5.v4.1 annot-version=v4.1 MMKILAGCCVLVLISIFLPSVCRIHAFSYDYSATTECLIEPQRAQYEGGIIANPDFTHGVQGWTVFGQGAIKEGISKNGNRYIVAHSRSQPLDSISQKVQ LEKGKLYSFSAWVQINGGRGNVAVVFKMSRGELVRGGKVLARNGCWSLLKGGVFANTSSRVEILFESKNTEAEIWVDNVSLQPFTMEQWRSHQDESTDTE RKGKVRFEVRNANGTAIEGARFSIKQTKSDFPFGCCMNYHIINSTDYQNWFTLRFKYTTFTNEMKWYTTEKIQGQENYTVADAMVRFAQQNGISIRGHNI FWDNPVYQPHWVKNLTLEELQNAADQRIKSVVSRYAGQLIAWDVMNENLHFSFFEDKLGKNASAEYYARAYQLDPDTTMFLNEYNTIEYSSDEKANPFNY KTKLDEILSYPGNQGISAGIGLQGHFGSGQPNLAYMRSCLDILGSTGLPIWLTEVDVGKDPNQAEYLEQVLREGYSHPAVKGIIMFVGPANAGFNSTVLA DEDFKNTPAGDVVDKLIDEWRFQTTEIKADGKGSIEIPLFHGDYNITVKDPVSSSLTAFSYKMTRDVTRDTVHLRINA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G33840			Glycosyl hydrolase family 10 p...		Potri.009G087800 [exp]	0	1
AT1G22400		ATUGT85A1, UGT8...	ARABIDOPSIS THALIANA UDP-GLUCO...		Potri.016G021800 [exp]	7.87	0.9242
AT5G22460			alpha/beta-Hydrolases superfam...		Potri.009G164900 [exp]	12.12	0.9162
AT5G18660		PCB2, DVR	PALE-GREEN AND CHLOROPHYLL B R...		Potri.008G204900 [exp]	13.49	0.9165
AT2G34430		LHCB1.4, LHB1B1	light-harvesting chlorophyll-p...		Potri.005G239300 [exp]	17.08	0.9137	LHB1.3,Lhcb1-2
AT1G22400		ATUGT85A1, UGT8...	ARABIDOPSIS THALIANA UDP-GLUCO...		Potri.016G021300 [exp]	18.43	0.9101
AT5G45670			GDSL-like Lipase/Acylhydrolase...		Potri.018G089100 [exp]	25.33	0.9066
AT4G10340		LHCB5	light harvesting complex of ph...		Potri.019G063101 [exp]	34.64	0.9057
AT1G20340		PETE2, DRT112	PLASTOCYANIN 2, DNA-DAMAGE-REP...		Potri.002G016000 [exp]	36.08	0.9061	PETE.2
AT3G29230			Tetratricopeptide repeat (TPR)...		Potri.006G265200 [exp]	37.46	0.9055
AT4G21780			unknown protein		Potri.011G136500 [exp]	38.41	0.9021

Compare expression of checked genes

Potri.009G087800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.